|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8524#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1593 fasta sequence
[ATTCCGTCCGTGCCTCCCCCTAACCCCAACCCGCCTCCAGCTTCGCGCCGCCTCCAAACCCCCACAGTCCGCCGCCGGCGGCCATGCTCCTCCACCACCGCCTCCTACCTCGCCTCCTCCTTTCCCCCTCGACCCCGGTCACCACCACCCTGCTCGTCCACCGCACCTCCCTCTTCCCGACCCGCCGCATCCTCTCGCCCTGCTGCTCCGCGCTCTCCCAAGTGGCGGCGGCGCCGGAAACCGTCGACCACTCCGACGGCGACGAGCCCCAGGGGGATGTGCAGGTTCAGCTACCTCTCGACCGGCTCTTCGTGCCGCCCGGGGCGAGCGTGTCCGCGGGGGACGCCGAGGCGGTGACCGCGCGGGTCCTCAAGGGCTCCAACATCGTGCTGGGCCCGTACGCGCGCGGCGACGCGAACGTGATCGCCGCGGACTTCGTGAAGAGCAGCGTCCGCCCCGATGACTGCCCCAGGGACGGGCTACCGGAGTTCGCCCTTGTTGGCCGGTCCAACGTCGGCAAGTCGTCGCTGCTCAACTCGCTCGTCCGGCGCAAGCGCCTCGCGCTCACTTCCAAGAAGCCTGGGAAGACACAATGTATCAACCATTTCAAAGTAAACGACAGTTGGTACCTTGTTGATTTGCCTGGTTATGGGTATGCTGCTGCACCACAAGAAGCTCGCACGAATTGGGATGAATTTACTAGAAATTACTTCCTCGGCAGGGAGAATTTGGTATCAGTTTTTCTCCTAGTAGATGCAAGTATTCCAGCTAAGAAGATTGATCTTGACTATGCTAGCTGGCTTGGTCAAAACAAGGTCCCCATGACGCTAGTGTTCACAAAATGTGACAAACGCAAGAAGAAGAAAAACGGTGGCAAAAGACCGGAAGAAAATGTAGAAAACTTCCAGAGCTTGATCCGTGAATATTTTGAGGCAGCACCCCCTTGGATCATGACGAGCAGTGTCACCAATCAAGGCCGAGACGAGATACTTCTGCACATGTCTCAGCTCAGGAACTATTGGCTCAAGCATTAAGATGAAATAAAAATACTAATACTAGAACTCAAGCAGCAGCAACGCATGCAAACCCTGTTGCTCATTGATGCCTCGGCAATTCAGCACCTTTGCAATCAGGCCTTCACCAACTGACTTGCCTTTTGAGCTGTTGATTGTAAACTATTGCCTCTGTACATGATTACTCAATCAACAGATTGGAGAATTGGGGAATACAAACAAGCTGCTACATCAACTACCCTAGGTTCAAGACCTTTCAAGGAACGGTTTCTGTGATGGGCAGAATGCATGGAACAGGCCACATTATTGGGATCCATCATACAATGGTTTCTTTTATCACATGCTTAATCAAGTGCGTGCTGGCACAAGTCCGCCTGGAGAATGGAGATAGAAAAATGCTCAGGTAATTGCAGGCTAGTTTGATAGTACTAGTAAACTGTTCTTATTAGTAGGATCCCATGCTGATGTGTGTTTCGTTTGTTAGGCCTCTCTCCTTTCTTAGGTTTGCCCTTCCCATCTGTCCTCAGTTCTGTCTTACTGCTAACAAAATACTTAACACCTGTATGTTTGTCTTTATAAG]
[+] EMBL AK067563 [ATTCCGTCCGTGCCTCCCCCTAACCCCAACCCGCCTCCAGCTTCGCGCCGCCTCCAAACCCCCACAGTCCGCCGCCGGCGGCCATGCTCCTCCACCACCGCCTCCTACCTCGCCTCCTCCTTTCCCCCTCGACCCCGGTCACCACCACCCTGCTCGTCCACCGCACCTCCCTCTTCCCGACCCGCCGCATCCTCTCGCCCTGCTGCTCCGCGCTCTCCCAAGTGGCGGCGGCGCCGGAAACCGTCGACCACTCCGACGGCGACGAGCCCCAGGGGGATGTGCAGGTTCAGCTACCTCTCGACCGGCTCTTCGTGCCGCCCGGGGCGAGCGTGTCCGCGGGGGACGCCGAGGCGGTGACCGCGCGGGTCCTCAAGGGCTCCAACATCGTGCTGGGCCCGTACGCGCGCGGCGACGCGAACGTGATCGCCGCGGACTTCGTGAAGAGCAGCGTCCGCCCCGATGACTGCCCCAGGGACGGGCTACCGGAGTTCGCCCTTGTTGGCCGGTCCAACGTCGGCAAGTCGTCGCTGCTCAACTCGCTCGTCCGGCGCAAGCGCCTCGCGCTCACTTCCAAGAAGCCTGGGAAGACACAATGTATCAACCATTTCAAAGTAAACGACAGTTGGTACCTTGTTGATTTGCCTGGTTATGGGTATGCTGCTGCACCACAAGAAGCTCGCACGAATTGGGATGAATTTACTAGAAATTACTTCCTCGGCAGGGAGAATTTGGTATCAGTTTTTCTCCTAGTAGATGCAAGTATTCCAGCTAAGAAGATTGATCTTGACTATGCTAGCTGGCTTGGTCAAAACAAGGTCCCCATGACGCTAGTGTTCACAAAATGTGACAAACGCAAGAAGAAGAAAAACGGTGGCAAAAGACCGGAAGAAAATGTAGAAAACTTCCAGAGCTTGATCCGTGAATATTTTGAGGCAGCACCCCCTTGGATCATGACGAGCAGTGTCACCAATCAAGGCCGAGACGAGATACTTCTGCACATGTCTCAGCTCAGGAACTATTGGCTCAAGCATTAAGATGAAATAAAAATACTAATACTAGAACTCAAGCAGCAGCAACGCATGCAAACCCTGTTGCTCATTGATGCCTCGGCAATTCAGCACCTTTGCAATCAGGCCTTCACCAACTGACTTGCCTTTTGAGCTGTTGATTGTAAACTATTGCCTCTGTACATGATTACTCAATCAACAGATTGGAGAATTGGGGAATACAAACAAGCTGCTACATCAACTACCCTAGGTTCAAGACCTTTCAAGGAACGGTTTCTGTGATGGGCAGAATGCATGGAACAGGCCACATTATTGGGATCCATCATACAATGGTTTCTTTTATCACATGCTTAATCAAGTGCGTGCTGGCACAAGTCCGCCTGGAGAATGGAGATAGAAAAATGCTCAGGTAATTGCAGGCTAGTTTGATAGTACTAGTAAACTGTTCTTATTAGTAGGATCCCATGCTGATGTGTGTTTCGTTTGTTAGGCCTCTCTCCTTTCTTAGGTTTGCCCTTCCCATCTGTCCTCAGTTCTGTCTTACTGCTAACAAAATACTTAACACCTGTATGTTTGTCTTTATAAG]
[+] EMBL CB653895 [ ACCGCCTCCTACCTCGCCTCCTCCTTTCCCCCTCGACCCCGGTCACCACCACCCTGCTCGTCCACCGCACCTCCCTCTTCCCGACCCGCCGCATCCTCTCGCCCTGCTGCTCCGCGCTCTCCCAAGTGGCGGCGGCGCCGGAAACCGTCGACCACTCCGACGGCGACGAGCCCCAGGGGGATGTGCAGGTTCAGCTACCTCTCGACCGGCTCTTCGTGCCGCCCGGGGCGAGCGTGTCCGCGGGGGACGCCGAGGCGGTGACCGCGCGGGTCCTCAAGGGCTCCAACATCGTGCTGGGCCCGTACGCGCGCGGCGACGCGAACGTGATCGCCGCGGACTTCGTGAAGAGCAGCGTCCGCCCCGATGACTGCCCCAGGGACGGGCTACCGGAGTTCGCCCTTGTTGGCCGGTCCAACGTCGGCAAGTCGTCGCTGCTCAACTCGCTCGTCCGGCGCAAGCGCCTCGCGCTCACTTCCAAGAAGCCTGGGAAGACACAATGTATCAACCATTTCAAAGTAAACGACAGTTGGTACCTTGTTGATTTGCCTGGTTATGGGTATGCTGCTGCACCACAAGAAGCTCGCACGAATTGGGATGAATTTACTAGAAATTACTTCCTCGGCAGGGAGAATTTGGTATCAGTTTTTCTCCTAGTAGATGCAAGTATTCCAGCTAAGAAGATTGATCTTGACTATGCTAGCTGGCTTGGTCAAAACAAGGTCCCCATGACGC ]
consensusID : consensus_8524#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 770 fasta sequence
[AGTATTCCAGCTAAGAAGATTGATCTTGACTATGCTAGCTGGCTTGGTCAAAACAAGGTCCCCATGACGCTAGTGTTCACAAAATGTGACAAACGCAAGAAGAAGAAAAACGGTGGCAAAAGACCGGAAGAAAATGTAGAAAACTTCCAGAGCTTGATCCGTGAATATTTTGAGGCAGCACCCCCTTGGATCATGACGAGCAGTGTCACCAATCAAGGCCGAGACGAGATACTTCTGCACATGTCTCAGCTCAGGAACTATTGGCT-CAAGCATTAAGATGA-AATA-AAAATACTAATACTAGAACTCAAGCAGCAGCAACGCATGCAAACCCTGTTGCTCATTGATGCCTCGGCAATTCAGCACCTTTGCAATCAGGGCTTCACCAACTGACTTGCCTTTTGAGCTGTTGATTGTAAACTATTGCCTCTGTACATGATTACTCAATCAACAGATTGGAGAATTGGGGAATACAAACAAGCTGCTACATCAACTACCCTAGGTTTTCTATTTGTATATCGTACAATCTCAGCTTTTTCTGTTTGTTGTTTTCTGATTATAAGCTGGAGCATTCTGTTGGTTAAAAACAACTGCTATCAGCTGGTCATGATTGGGAATCCCAGTTTTTGTTTGTTATGTGCTCCCTTGGACCCTGCATCACACACATGGCAAGGAGTACATGCATGATGCATTTGACATGTTAAAGAATGATTTGTGTGATGTACAGAGTATTGAAAATGCCATATTATTGGGATATATTATACAATGTTTTC]
[-] EMBL CB653896 [AGTATTCCAGCTAAGAAGATTGATCTTGACTATGCTAGCTGGCTTGGTCAAAACAAGGTCCCCATGACGCTAGTGTTCACAAAATGTGACAAACGCAAGAAGAAGAAAAACGGTGGCAAAAGACCGGAAGAAAATGTAGAAAACTTCCAGAGCTTGATCCGTGAATATTTTGAGGCAGCACCCCCTTGGATCATGACGAGCAGTGTCACCAATCAAGGCCGAGACGAGATACTTCTGCACATGTCTCAGCTCAGGAACTATTGGCT CAAGCATTAAGATGA AATA AAAATACTAATACTAGAACTCAAGCAGCAGCAACGCATGCAAACCCTGTTGCTCATTGATGCCTCGGCAATTCAGCACCTTTGCAATCAGGCCTTCACCAACTGACTTGCCTTTTGAGCTGTTGATTGTAAACTATTGCCTCTGTACATGATTACTCAATCAACAGATTGGAGAATTGGGGAATACAAACAAGCTGCTACATCAACTACCCTAGGTTTTCTATTTGTATATCGTACAATCTCAGCTTTTTCTGTTTGTTGTTTTCTGATTATAAGCTGGAGCATTCTGTTGGTTAAAAACAACTGCTATCAGCTGGTCATGATTGGGAATCCCAGTTTTTGTTTGTTATGTGCTCCCTTGGACCCTGCATCACACACATGGCAAGGAGTACATGCATGATGCATTTGACATGTTAAAGAATGATTTGTGTGATGTACAGAGTATTGAAAATGCCATATTATTGGGATATATTATACAATGTTTTC]
[+] EMBL AA754236 [ gGATMMGTGAATATTTTGAGGCAGCAMMMMMTTGGATCATGACGAGCAGTGTCA CAATCAAGGCMGAGACGAGATACTTCTGCACATGTCTCAGCTCAGGAACTATTGGCT CAAGCATTAAGATG AATA AAAATACTAATACTAGAACTCAAGCAGCAGCAACGCATGCAAA CCTGTTGCTCATTGATGCCTCGGCAATTCAGCACCTTTGCAATCAGGGCTTCACCAACTGWCTTGCCTTTTGAGCTGTTGATTGTAAcmt ]
[+] EMBL BM418900 [ GGCTGCAAGCCTTAAGATGAGAATAGAAAATACTAATACTAGAACTCAAGCAGCAGCAACGCATGCAAACCCTGTTGCTCATTGATGCCTCGGCAATTCAGCACCTTTGCNATCAGGACTTCACCAACTGACTTGCCTTTTGAGCTGTTGATTGTAAACTATTGCCTCTGTACATGATTACTCAATCAACAGATTGGAGAATTGGGGAATACCAACAAGCTGCTACATCAACTACCCTAGGTTTTCTATTTGTATATCGTACCATCTCAGCTTTTTCTGTTTGTTGTTTTCTGATTATAAGCTGGAGCNTTCTGTTGGTTAAAAACCACTGCTATCAGCTGGTCATGATTGGGAATCCCAGTTTTTGTTTGTTATGTGCTCCCTTGGACCCTGCATCACACACATGGCAAGGAGTACATGCATGATGCNTTTGACATGTTAAAGAA GATTTGTGTGAaaaaaaaaa ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8524#0 ATTCCGTCCGTGCCTCCCCCTAACCCCAACCCGCCTCCAGCTTCGCGCCGCCTCCAAACC 60
consensus_8524#1 ------------------------------------------------------------
consensus_8524#0 CCCACAGTCCGCCGCCGGCGGCCATGCTCCTCCACCACCGCCTCCTACCTCGCCTCCTCC 120
consensus_8524#1 ------------------------------------------------------------
consensus_8524#0 TTTCCCCCTCGACCCCGGTCACCACCACCCTGCTCGTCCACCGCACCTCCCTCTTCCCGA 180
consensus_8524#1 ------------------------------------------------------------
consensus_8524#0 CCCGCCGCATCCTCTCGCCCTGCTGCTCCGCGCTCTCCCAAGTGGCGGCGGCGCCGGAAA 240
consensus_8524#1 ------------------------------------------------------------
consensus_8524#0 CCGTCGACCACTCCGACGGCGACGAGCCCCAGGGGGATGTGCAGGTTCAGCTACCTCTCG 300
consensus_8524#1 ------------------------------------------------------------
consensus_8524#0 ACCGGCTCTTCGTGCCGCCCGGGGCGAGCGTGTCCGCGGGGGACGCCGAGGCGGTGACCG 360
consensus_8524#1 ------------------------------------------------------------
consensus_8524#0 CGCGGGTCCTCAAGGGCTCCAACATCGTGCTGGGCCCGTACGCGCGCGGCGACGCGAACG 420
consensus_8524#1 ------------------------------------------------------------
consensus_8524#0 TGATCGCCGCGGACTTCGTGAAGAGCAGCGTCCGCCCCGATGACTGCCCCAGGGACGGGC 480
consensus_8524#1 ------------------------------------------------------------
consensus_8524#0 TACCGGAGTTCGCCCTTGTTGGCCGGTCCAACGTCGGCAAGTCGTCGCTGCTCAACTCGC 540
consensus_8524#1 ------------------------------------------------------------
consensus_8524#0 TCGTCCGGCGCAAGCGCCTCGCGCTCACTTCCAAGAAGCCTGGGAAGACACAATGTATCA 600
consensus_8524#1 ------------------------------------------------------------
consensus_8524#0 ACCATTTCAAAGTAAACGACAGTTGGTACCTTGTTGATTTGCCTGGTTATGGGTATGCTG 660
consensus_8524#1 ------------------------------------------------------------
consensus_8524#0 CTGCACCACAAGAAGCTCGCACGAATTGGGATGAATTTACTAGAAATTACTTCCTCGGCA 720
consensus_8524#1 ------------------------------------------------------------
consensus_8524#0 GGGAGAATTTGGTATCAGTTTTTCTCCTAGTAGATGCAAGTATTCCAGCTAAGAAGATTG 780
consensus_8524#1 --------------------------------------AGTATTCCAGCTAAGAAGATTG 22
**********************
consensus_8524#0 ATCTTGACTATGCTAGCTGGCTTGGTCAAAACAAGGTCCCCATGACGCTAGTGTTCACAA 840
consensus_8524#1 ATCTTGACTATGCTAGCTGGCTTGGTCAAAACAAGGTCCCCATGACGCTAGTGTTCACAA 82
************************************************************
consensus_8524#0 AATGTGACAAACGCAAGAAGAAGAAAAACGGTGGCAAAAGACCGGAAGAAAATGTAGAAA 900
consensus_8524#1 AATGTGACAAACGCAAGAAGAAGAAAAACGGTGGCAAAAGACCGGAAGAAAATGTAGAAA 142
************************************************************
consensus_8524#0 ACTTCCAGAGCTTGATCCGTGAATATTTTGAGGCAGCACCCCCTTGGATCATGACGAGCA 960
consensus_8524#1 ACTTCCAGAGCTTGATCCGTGAATATTTTGAGGCAGCACCCCCTTGGATCATGACGAGCA 202
************************************************************
consensus_8524#0 GTGTCACCAATCAAGGCCGAGACGAGATACTTCTGCACATGTCTCAGCTCAGGAACTATT 1020
consensus_8524#1 GTGTCACCAATCAAGGCCGAGACGAGATACTTCTGCACATGTCTCAGCTCAGGAACTATT 262
************************************************************
consensus_8524#0 GGCTCAAGCATTAAGATGAAATAAAAATACTAATACTAGAACTCAAGCAGCAGCAACGCA 1080
consensus_8524#1 GGCTCAAGCATTAAGATGAAATAAAAATACTAATACTAGAACTCAAGCAGCAGCAACGCA 322
************************************************************
consensus_8524#0 TGCAAACCCTGTTGCTCATTGATGCCTCGGCAATTCAGCACCTTTGCAATCAGGCCTTCA 1140
consensus_8524#1 TGCAAACCCTGTTGCTCATTGATGCCTCGGCAATTCAGCACCTTTGCAATCAGGGCTTCA 382
****************************************************** *****
consensus_8524#0 CCAACTGACTTGCCTTTTGAGCTGTTGATTGTAAACTATTGCCTCTGTACATGATTACTC 1200
consensus_8524#1 CCAACTGACTTGCCTTTTGAGCTGTTGATTGTAAACTATTGCCTCTGTACATGATTACTC 442
************************************************************
consensus_8524#0 AATCAACAGATTGGAGAATTGGGGAATACAAACAAGCTGCTACATCAACTACCCTAGGTT 1260
consensus_8524#1 AATCAACAGATTGGAGAATTGGGGAATACAAACAAGCTGCTACATCAACTACCCTAGGTT 502
************************************************************
consensus_8524#0 CAAGACCTTTCAAGGAACGGTTTCTGTGATGGGCAGAATGCATGGAACAGGCCACATTAT 1320
consensus_8524#1 --------TTCTA-------TTTGTATATCGTACAATCT--------CAGCTTTTTCTGT 539
*** * *** * * * ** * *** * *
consensus_8524#0 TGGGATCCATCATACAATGGTTTCTTTTATCACATGCTTAATCAAGTGCGTGCTGGCACA 1380
consensus_8524#1 TTG---TTGTTTTCTGATTATAAGCTGGAGCATTCTGTTGGTTAAAAACA-ACTGCTATC 595
* * * * ** * * * ** ** * ** * *** *
consensus_8524#0 AGTCCGCCTGGAGAATGGAGATAGAAAAATGCTCAGGTAATTGCAGGCTAGTTTGATAGT 1440
consensus_8524#1 AGCTGGTC--ATGATTGGGAATCCCAGT---TTTTGTTTGTTATGTGCTCCCTTGG---- 646
** * * ** *** ** * * * * ** *** ***
consensus_8524#0 ACTAGTAAACTGTTCTTATTAGTAGGATCCCATGCTGATGTGTGTTTCGTTTGTTAGGCC 1500
consensus_8524#1 ACCC-TGCATCACACACATGGCAAGGAGTACATGC-ATGATGCATTTGACATGTTAAAG- 703
** * * * ** **** ***** ** *** *****
consensus_8524#0 TCTCTCCTTTCTTAGGTTTGCCCTTCCCATCTGTCCTCAGTTCTGTCTTACTGCTAACAA 1560
consensus_8524#1 --AATGATTTGTGTGATGTACA------GAGTATTGAAAATGCCATATTATTGG-GATAT 754
* *** * * * * * * * * * * * *** ** * *
consensus_8524#0 AATACTTAACACCTGTATGTTTGTCTTTATAAG 1593
consensus_8524#1 ATTATACAATGTTTTC----------------- 770
* ** ** *
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||