cluster # 8527

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Oryza sativa
cluster # 8527 cluster # 8527 Sequences # 5 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8527#0 length = 1130 sequences # 3

consensus_8527#1 length = 400 sequences # 1
consensus_8527#2 length = 302 sequences # 1

consensusID : consensus_8527#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1130
fasta sequence

                              [CAGGGAGGAGACCGACGCGCCGCGCCGCGCCGGCGACTTCGCCCTGCGCCCGCGCACGCCCGCCCGTCGCCCCGTCGCCCGTCGCCCGTCGCCGCGTCGCGCTTTGCCACCGTCCCCTGTCCCAGTCGCGCGGTCGCCGCTTCGCTGCTTCGGCCCCTCCACGCGCCAGCGCCGGCGGCCCGCTCTAGGTGTCTCGGCGCCTCCAGTCCATGCGCCAGCGCCAGCGC-CAGCGGCGCCTTTCCGGAGCTCCAGACGAAGCCCGAGGGACGAAGTAAATTTCTGCCATGGAAACAACTCAGAAAGCTGATCCAGTGGAACCAGCAGCTAAGATTGTTCGACAAACCTCACAGTTCAAACGGTGGGGACGGAAACATCCATTTGTTCGATATGGGCTGCCACTTATCTCTTTGACAGTGTTTGGTGCAGTAGGACTCGCTCATCTTATACAGGGCAGCAAAGAAGTAACAAAGGAAAAGGAGGACATGGAATGGGAGGTTGTAGAAACAACAAAAGCCCTGAGCCGAACAGGACCGGTGGAAGGAGCCTACAAGCCTAAGAAGCTTTCACTAGAGGATGAGCTG-AAGGCTTTGCAGCAAAAGGTGGACATAAACAACTATGACTACAAGAGGATTCCCAGACCCAATGAG-AAAT-AATTGANGTAAAGCATCATTTACCACCCTGANAAAGCAAAGTANAAAGTCTCATCATTTTTTTCCTTCGTGACATCTGTTTAATGCTGACTGCCCAAATGAGATGAGGAAATTCCAGCATTGTAGCCGGCAACAACCTCCAGTATTATCATGAGAACTCTATGTTCTTTCTGCCACCATTGTAGAGAATTAAGGTGATGATTCTTGAACTGTACGAATCAGCGTTTGTAACGACGGCACTAGGCATGATAAACTTGGCTGTAGCTTTGTATGTCTACTCTTGTGAGATTTTTTTGGTGTTGGAATACTGCCCCAGGAATGGGTGAATAAATTGCAAGACTACTCTTGACATGTGAACTACAGCTCTGTTGTATGTTATTCTTCTTCAAAGAGAATTTGAATCCCCNCTTCATGTATATATATACTCAGCTATTGTTCTAGAAATATCTTCGACAACAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL BF430560             [CAGGGAGGAGACCGACGCGCCGCGCCGCGCCGGCGACTTCGCCCTGCGCCCGCGCACGCCCGCCCGTCGCCCCGTCGCCCGTCGCCCGTCGCCGCGTCGCGCTTTGCCACCGTCCCCTGTCCCAGTCGCGCGGTCGCCGCTTCGCTGCTTCGGCCCCTCCACGCGCCAGCGCCGGCGGCCCGCTCTAGGTGTCTCGGCGCCTCCAGTCCATGCGCCAGCGCCAGCGC CAGCGGCGCCTTTCCGGAGCTCCAGACGAAGCCCGAGGGACGAAGTAAATTTCTGCCATGGAAACAACTCAGAAAGCTGATCCAGTGGAACCAGCAGCTAAGATTGTTCGACAAACCTCACAGTTCAAACGGTGGGGACGGAAACATCCATTTGTTCGATATGGGCTGCCACTTATCTCTTTGACAGTGTTTGGTGCAGTAGGACTCGCTCATCTTATACAGGGCAGCAAAGAAGTAACAAAGGAAAAGGAGGACATGGAATGGGAGGTTGTAGAAACAACAAAAGCCCTGAGCCGAACAGGACCGGTGGAAGGAGCCTACAAGCCTAAGAAGCTTTCACTAGAGGATGAGCTG AAGGCTTTGCAGCAAAAGGTGGACATAAACAACTATGACTACAAGAGGATTCCCAGACCCAATGAG ATAT AATTG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL AU032368             [                                                                                                                                                                                        CTAGGTGTCTCGGCGCCTCCAGTCCATGCGCCA CGCCAG GCNCAG GANTNGTATCCGGAGCTCCAGACGAAGCCCGAGGGACGAA TAAATTTCTGCCATGGAAACAACTCAGAAAGCTGATCCAGTGGAACCAGCAGCTAAGATTGTTCGACAAACCTCACAGTTCAAACGGTGGGGACGGAAACATCCATTTGTTCGATATGGGCTGCCACTTATCTCTTTGACAGTGTTTGGTGCAGTAGGACTCGCTCATCTTATACAGGGCAGCAAAGAAGTAACAAAGGAAAAGGAGGACATGGAATGGGAGGTTGTAGAAACAACAAAAGCCCTGAGCCGAACAGGACCGGTGGAAGGAGCCTACAAGCCTAAGAAGCTTTCACTAGAGGATGAGCTGAAAGGCTTTGCAGCAAAAGGTGGACATAAACAACTATGACTACAAGAGGATTCCCAGACCCAATGAGAAAATAAATTGANGTAAAGCATCATTTACCACCCTGANAAAGCAAAGTANAAAGTCTCATCATTTTTTTCCTTCGTGACATCTGTTTAATGCTGACTGCCCAAATGAGATGAGGAAATTCCAGCATTG                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL AU093185             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                TTGTAGAACCACCAAAAGCCTTGACCCGAACAGGACCGGTGAAAGGAGCCTACAAGCCTAAGAAGCTTTCACTAGAGGATGAGCTG AAGGCTTTGCAGCAAAAGGTGGACATAACCAACTATGNCTNCAAGAGGATTCCCAGACCCAATGAG AAAT AATTGAAGTAAAGCATCATTTACCACCCTGA GAAGCAAAGTA AAAGTCTCATCA TTTTTTCCTTCGTGACATCTGTTTAATGCTGACTGCCCAAATGAGATGAGGAAATTCCAGCATTGTAGCCGGCAACAACCTCCAGTATTATCATGAGAACTCTATGTTCTTTCTGCCACCATTGTAGAGAATTAAGGTGATGATTCTTGAACTGTACGAATCAGCGTTTGTAACGACGGCACTAGGCATGATAAACTTGGCTGTAGCTTTGTATGTCTACTCTTGTGAGATTTTTTTGGTGTTGGAATACTGCCCCAGGAATGGGTGAATAAATTGCAAGACTACTCTTGACATGTGAACTACAGCTCTGTTGTATGTTATTCTTCTTCAAAGAGAATTTGAATCCCCNCTTCATGTATATATATACTCAGCTATTGTTCTAGAAATATCTTCGACAACAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_8527#0
CAGGGAGGAGACCGACGCGCCGCGCCGCGCCGGCGACTTCGCCCTGCGCCCGCGCACGCC
CGCCCGTCGCCCCGTCGCCCGTCGCCCGTCGCCGCGTCGCGCTTTGCCACCGTCCCCTGT
CCCAGTCGCGCGGTCGCCGCTTCGCTGCTTCGGCCCCTCCACGCGCCAGCGCCGGCGGCC
CGCTCTAGGTGTCTCGGCGCCTCCAGTCCATGCGCCAGCGCCAGCGCCAGCGGCGCCTTT
CCGGAGCTCCAGACGAAGCCCGAGGGACGAAGTAAATTTCTGCCATGGAAACAACTCAGA
AAGCTGATCCAGTGGAACCAGCAGCTAAGATTGTTCGACAAACCTCACAGTTCAAACGGT
GGGGACGGAAACATCCATTTGTTCGATATGGGCTGCCACTTATCTCTTTGACAGTGTTTG
GTGCAGTAGGACTCGCTCATCTTATACAGGGCAGCAAAGAAGTAACAAAGGAAAAGGAGG
ACATGGAATGGGAGGTTGTAGAAACAACAAAAGCCCTGAGCCGAACAGGACCGGTGGAAG
GAGCCTACAAGCCTAAGAAGCTTTCACTAGAGGATGAGCTGAAGGCTTTGCAGCAAAAGG
TGGACATAAACAACTATGACTACAAGAGGATTCCCAGACCCAATGAGAAATAATTGANGT
AAAGCATCATTTACCACCCTGANAAAGCAAAGTANAAAGTCTCATCATTTTTTTCCTTCG
TGACATCTGTTTAATGCTGACTGCCCAAATGAGATGAGGAAATTCCAGCATTGTAGCCGG
CAACAACCTCCAGTATTATCATGAGAACTCTATGTTCTTTCTGCCACCATTGTAGAGAAT
TAAGGTGATGATTCTTGAACTGTACGAATCAGCGTTTGTAACGACGGCACTAGGCATGAT
AAACTTGGCTGTAGCTTTGTATGTCTACTCTTGTGAGATTTTTTTGGTGTTGGAATACTG
CCCCAGGAATGGGTGAATAAATTGCAAGACTACTCTTGACATGTGAACTACAGCTCTGTT
GTATGTTATTCTTCTTCAAAGAGAATTTGAATCCCCNCTTCATGTATATATATACTCAGC
TATTGTTCTAGAAATATCTTCGACAACAAAAAAAAAAAAAAAAAAAAAAA

consensusID : consensus_8527#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 400
fasta sequence

                              [TAAANAACTATGACTACAAGAGGATTCCCAGACCCATGAGAATAANTGAAGTAAAGCATCATTTACCACCCTGAGAAGCAAAGTAAAAGTCTCATCATTTTTTCCTTCGTNACATCTGTTTAATGCTGACTGCCCAAATGAGATGAGGAAATTCCAGCATTGTAGCCGGCAACAACCTCCAGTATTATCATGAGAACTCTATGTTCTTTCTGCCACCATTGTAGAGAATTAAGGTGATGATTCTTGAACTGTACGAATCAGCGTTTNTAACGACGGCACTAGGNATGATAAACTTGGCTGTAGCTTTGTATGTCTACTCTTGTGAGATTTTTTTGGTGTTGGAATACTGCCCCAGGAATGGGTGAATAAATTGCAAGACTACTCTTGAAAAAAAAAAAAA]

[+] EMBL AU032369             [TAAANAACTATGACTACAAGAGGATTCCCAGACCCATGAGAATAANTGAAGTAAAGCATCATTTACCACCCTGAGAAGCAAAGTAAAAGTCTCATCATTTTTTCCTTCGTNACATCTGTTTAATGCTGACTGCCCAAATGAGATGAGGAAATTCCAGCATTGTAGCCGGCAACAACCTCCAGTATTATCATGAGAACTCTATGTTCTTTCTGCCACCATTGTAGAGAATTAAGGTGATGATTCTTGAACTGTACGAATCAGCGTTTNTAACGACGGCACTAGGNATGATAAACTTGGCTGTAGCTTTGTATGTCTACTCTTGTGAGATTTTTTTGGTGTTGGAATACTGCCCCAGGAATGGGTGAATAAATTGCAAGACTACTCTTGAAAAAAAAAAAAA]




>consensus_8527#1
TAAANAACTATGACTACAAGAGGATTCCCAGACCCATGAGAATAANTGAAGTAAAGCATC
ATTTACCACCCTGAGAAGCAAAGTAAAAGTCTCATCATTTTTTCCTTCGTNACATCTGTT
TAATGCTGACTGCCCAAATGAGATGAGGAAATTCCAGCATTGTAGCCGGCAACAACCTCC
AGTATTATCATGAGAACTCTATGTTCTTTCTGCCACCATTGTAGAGAATTAAGGTGATGA
TTCTTGAACTGTACGAATCAGCGTTTNTAACGACGGCACTAGGNATGATAAACTTGGCTG
TAGCTTTGTATGTCTACTCTTGTGAGATTTTTTTGGTGTTGGAATACTGCCCCAGGAATG
GGTGAATAAATTGCAAGACTACTCTTGAAAAAAAAAAAAA

consensusID : consensus_8527#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 302
fasta sequence

                              [NTCCAGCAATGTAAACCGGCAACAACCNCCNGTANTANCCANGAAGAACTCTATGNTCTTTCTGCCACCATTGTAGAGAATTNNGGTGATGAANCTTGAACTGTACGAATCAGCGNTTGTAACGACGGCACTAGGCNTGATAAACTTGGCTGTAGCTTTGTATGTCTACTCNTGTGNGATTTTTTTGGTGTTGGNATACTGCCCCNGGAATGGGTGAATNAATTGCAAGACTACTCTTGACNTGTGNACTACAGCTCTGTTGTATGTTATTCTTCTTCAAAGAGNATTTGAATCCCCAAAAA]

[+] EMBL AU161510             [NTCCAGCAATGTAAACCGGCAACAACCNCCNGTANTANCCANGAAGAACTCTATGNTCTTTCTGCCACCATTGTAGAGAATTNNGGTGATGAANCTTGAACTGTACGAATCAGCGNTTGTAACGACGGCACTAGGCNTGATAAACTTGGCTGTAGCTTTGTATGTCTACTCNTGTGNGATTTTTTTGGTGTTGGNATACTGCCCCNGGAATGGGTGAATNAATTGCAAGACTACTCTTGACNTGTGNACTACAGCTCTGTTGTATGTTATTCTTCTTCAAAGAGNATTTGAATCCCCAAAAA]




>consensus_8527#2
NTCCAGCAATGTAAACCGGCAACAACCNCCNGTANTANCCANGAAGAACTCTATGNTCTT
TCTGCCACCATTGTAGAGAATTNNGGTGATGAANCTTGAACTGTACGAATCAGCGNTTGT
AACGACGGCACTAGGCNTGATAAACTTGGCTGTAGCTTTGTATGTCTACTCNTGTGNGAT
TTTTTTGGTGTTGGNATACTGCCCCNGGAATGGGTGAATNAATTGCAAGACTACTCTTGA
CNTGTGNACTACAGCTCTGTTGTATGTTATTCTTCTTCAAAGAGNATTTGAATCCCCAAA
AA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8527#0      CAGGGAGGAGACCGACGCGCCGCGCCGCGCCGGCGACTTCGCCCTGCGCCCGCGCACGCC 60
consensus_8527#1      ------------------------------------------------------------
consensus_8527#2      ------------------------------------------------------------
                                                                                  

consensus_8527#0      CGCCCGTCGCCCCGTCGCCCGTCGCCCGTCGCCGCGTCGCGCTTTGCCACCGTCCCCTGT 120
consensus_8527#1      ------------------------------------------------------------
consensus_8527#2      ------------------------------------------------------------
                                                                                  

consensus_8527#0      CCCAGTCGCGCGGTCGCCGCTTCGCTGCTTCGGCCCCTCCACGCGCCAGCGCCGGCGGCC 180
consensus_8527#1      ------------------------------------------------------------
consensus_8527#2      ------------------------------------------------------------
                                                                                  

consensus_8527#0      CGCTCTAGGTGTCTCGGCGCCTCCAGTCCATGCGCCAGCGCCAGCGCCAGCGGCGCCTTT 240
consensus_8527#1      ------------------------------------------------------------
consensus_8527#2      ------------------------------------------------------------
                                                                                  

consensus_8527#0      CCGGAGCTCCAGACGAAGCCCGAGGGACGAAGTAAATTTCTGCCATGGAAACAACTCAGA 300
consensus_8527#1      ------------------------------------------------------------
consensus_8527#2      ------------------------------------------------------------
                                                                                  

consensus_8527#0      AAGCTGATCCAGTGGAACCAGCAGCTAAGATTGTTCGACAAACCTCACAGTTCAAACGGT 360
consensus_8527#1      ------------------------------------------------------------
consensus_8527#2      ------------------------------------------------------------
                                                                                  

consensus_8527#0      GGGGACGGAAACATCCATTTGTTCGATATGGGCTGCCACTTATCTCTTTGACAGTGTTTG 420
consensus_8527#1      ------------------------------------------------------------
consensus_8527#2      ------------------------------------------------------------
                                                                                  

consensus_8527#0      GTGCAGTAGGACTCGCTCATCTTATACAGGGCAGCAAAGAAGTAACAAAGGAAAAGGAGG 480
consensus_8527#1      ------------------------------------------------------------
consensus_8527#2      ------------------------------------------------------------
                                                                                  

consensus_8527#0      ACATGGAATGGGAGGTTGTAGAAACAACAAAAGCCCTGAGCCGAACAGGACCGGTGGAAG 540
consensus_8527#1      ------------------------------------------------------------
consensus_8527#2      ------------------------------------------------------------
                                                                                  

consensus_8527#0      GAGCCTACAAGCCTAAGAAGCTTTCACTAGAGGATGAGCTGAAGGCTTTGCAGCAAAAGG 600
consensus_8527#1      ------------------------------------------------------------
consensus_8527#2      ------------------------------------------------------------
                                                                                  

consensus_8527#0      TGGACATAAACAACTATGACTACAAGAGGATTCCCAGACCCAATGAGAAATAATTGANGT 660
consensus_8527#1      ------TAAANAACTATGACTACAAGAGGATTCCCAGACCCA-TGAGAA-TAANTGAAGT 52
consensus_8527#2      ------------------------------------------------------------
                                                                                  

consensus_8527#0      AAAGCATCATTTACCACCCTGANAAAGCAAAGTANAAAGTCTCATCATTTTTTTCCTTCG 720
consensus_8527#1      AAAGCATCATTTACCACCCTGAGAA-GCAAAGTAAAA-GTCTCATCATTTTTT-CCTTCG 109
consensus_8527#2      ------------------------------------------------------------
                                                                                  

consensus_8527#0      TGACATCTGTTTAATGCTGACTGCCCAAATGAGATGAGGAAATTCCAGCATTGTAG-CCG 779
consensus_8527#1      TNACATCTGTTTAATGCTGACTGCCCAAATGAGATGAGGAAATTCCAGCATTGTAG-CCG 168
consensus_8527#2      ------------------------------------------NTCCAGCAATGTAAACCG 18
                                                                 ******* ****  ***

consensus_8527#0      GCAACAACCTCCAGTATTATC--ATGAGAACTCTATGTTCTTTCTGCCACCATTGTAGAG 837
consensus_8527#1      GCAACAACCTCCAGTATTATC--ATGAGAACTCTATGTTCTTTCTGCCACCATTGTAGAG 226
consensus_8527#2      GCAACAACCNCCNGTANTANCCANGAAGAACTCTATGNTCTTTCTGCCACCATTGTAGAG 78
                      ********* ** *** ** *     *********** **********************

consensus_8527#0      AATTAAGGTGATGATTCTTGAACTGTACGAATCAGCGTTTGTAACGACGGCACTAGGCAT 897
consensus_8527#1      AATTAAGGTGATGATTCTTGAACTGTACGAATCAGCGTTTNTAACGACGGCACTAGGNAT 286
consensus_8527#2      AATTNNGGTGATGAANCTTGAACTGTACGAATCAGCGNTTGTAACGACGGCACTAGGCNT 138
                      ****  ********  ********************* ** ****************  *

consensus_8527#0      GATAAACTTGGCTGTAGCTTTGTATGTCTACTCTTGTGAGATTTTTTTGGTGTTGGAATA 957
consensus_8527#1      GATAAACTTGGCTGTAGCTTTGTATGTCTACTCTTGTGAGATTTTTTTGGTGTTGGAATA 346
consensus_8527#2      GATAAACTTGGCTGTAGCTTTGTATGTCTACTCNTGTGNGATTTTTTTGGTGTTGGNATA 198
                      ********************************* **** ***************** ***

consensus_8527#0      CTGCCCCAGGAATGGGTGAATAAATTGCAAGACTACTCTTGACATGTGAACTACAGCTCT 1017
consensus_8527#1      CTGCCCCAGGAATGGGTGAATAAATTGCAAGACTACTCTTGAAAAAAAAAAAAA------ 400
consensus_8527#2      CTGCCCCNGGAATGGGTGAATNAATTGCAAGACTACTCTTGACNTGTGNACTACAGCTCT 258
                      ******* ************* ********************       *  *       

consensus_8527#0      GTTGTATGTTATTCTTCTTCAAAGAGAATTTGAATCCCCNCTTCATGTATATATATACTC 1077
consensus_8527#1      ------------------------------------------------------------
consensus_8527#2      GTTGTATGTTATTCTTCTTCAAAGAGNATTTGAATCCCCAAAAA---------------- 302
                                                                                  

consensus_8527#0      AGCTATTGTTCTAGAAATATCTTCGACAACAAAAAAAAAAAAAAAAAAAAAAA 1130
consensus_8527#1      -----------------------------------------------------
consensus_8527#2      -----------------------------------------------------