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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8531#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1588 fasta sequence
[CGCTGAACAAAAAAAGAAAAGAAAAGAAAAGAAAAACCCTAGGCCGCCTAGAGAGAGAAAGGAGGAGAAGGGTTCGCCGGCGGCGGATCGGATCGGCGGCATTCACTCGTCATCTCGATGGAGTACGCGGCGCCGGCAGGGGCAGGGGCAGGGGGCTACTACTACTACCCGCCGTCGCAGCAGCACAAGCCTCGCCGTCCCCCGCGGCCCGCCGCCCGCTGGGTCAAGCACTGGATCCCGCAGGATCTCGCCACCTCCTCCGGCAAATGCGCCCTCTACAAGTGGGTCAGGGAGGATGTGTACAAGAATCTCAAGGACGGCAAGGCCGTGCCGGAGCCGGAGGCGGTGAAGCCTGAACCCACCACGGAGATCCTCTTCCTCTGCAGCTATGAAAACTGTGGCAAAACCTTTGTCGATGTCGCCGCCTTAAGGAAGCACGCTCATGTGCACAACGAGAGGCAGTATATTTGTCAGGAGCCTGGCTGTGGGAAGAAATTCGTAGATAGCTCCAAGTTGAAGAGACACCACCTTATTCATACAGGACAGAAGGATTTTATCTGTCCCCATCCAGGCTGTGGTAAGGCCTTCTCATTGGATTTTAACCTGCGTTCGCATCTAAAAACGCATGCGTTGGAAAACTATCATGTATGCCCATTTCCAGCATGTGGCAAAAGATTTACGAGTGACTCCAAATTAAAATCCCATGTCAAGGGCCATGAAAAGACTGGAACTCCGATCACAGCACAATATGTGCCATCATCAGATAAACCACAAAGCAGCAGTAAGCCTGCGACACCAGCAACAACTAAGCCTACAACACCAGCAGCAACGAAGACGACAACACCTGCATCAACTAAGCCTACAACACCAGCACCCACAAGCTTTGCTGAGCGACCATATGTCTGCCCATATGATGGTTGTGGGAAAGCCTACATTCACAGTTACAAATTGAACCTTCATCTAAAAACTCAGCATCCTGAACATGGTCAAGAAGAGAATGGTAGGATTGCTGCACATGCAAGTGAGCATGCTGTAAATGATCGTGCCAATCAGTATAACTATGCTGAGATTGTCGACCTTGCACCGAATCCAAAAAGGAGCAAGACAAATTCAGGGCATAAGACCCCCTCATCTAATAAAGCCTACAATGTCAAGATTTCTAGCGTGTTGCCTGCTGATATCAGTGGAGTGAAGAATCAGTGGCCAGGTAAGTATGAAGATGACAGTGAAGAGACAGAAGAAGACCAGGGCAACAACATTGAAGATGGCTGGAGATATGGTAACCAGAATGCCGATGATGAGGAAACAGAATATGAAGATTAACCAAACGATTCTCTTTTGTCCTTTACTAACATCCTGCTGCAATATATGCACTAACTAGACAGTAGACGTGGTGGCTGATACCTTTACTAATCTGCGTGCATTCTGAACCCTGGAAGTAGATTAGAGAAGTGCTGTTCTTGAGAGTAGTAGAATCAGATGGCCGTGATTGTGTGGTTTGGTCATAAATAGTCTTTGTATGCGACTTATTCTCGTTCAGTTTTTTATGCTCGATCTATGTATTCAATCATAAGTTGTGTTAAAAAAA]
[+] EMBL AK103444 [CGCTGAACAAAAAAAGAAAAGAAAAGAAAAGAAAAACCCTAGGCCGCCTAGAGAGAGAAAGGAGGAGAAGGGTTCGCCGGCGGCGGATCGGATCGGCGGCATTCACTCGTCATCTCGATGGAGTACGCGGCGCCGGCAGGGGCAGGGGCAGGGGGCTACTACTACTACCCGCCGTCGCAGCAGCACAAGCCTCGCCGTCCCCCGCGGCCCGCCGCCCGCTGGGTCAAGCACTGGATCCCGCAGGATCTCGCCACCTCCTCCGGCAAATGCGCCCTCTACAAGTGGGTCAGGGAGGATGTGTACAAGAATCTCAAGGACGGCAAGGCCGTGCCGGAGCCGGAGGCGGTGAAGCCTGAACCCACCACGGAGATCCTCTTCCTCTGCAGCTATGAAAACTGTGGCAAAACCTTTGTCGATGTCGCCGCCTTAAGGAAGCACGCTCATGTGCACAACGAGAGGCAGTATATTTGTCAGGAGCCTGGCTGTGGGAAGAAATTCGTAGATAGCTCCAAGTTGAAGAGACACCACCTTATTCATACAGGACAGAAGGATTTTATCTGTCCCCATCCAGGCTGTGGTAAGGCCTTCTCATTGGATTTTAACCTGCGTTCGCATCTAAAAACGCATGCGTTGGAAAACTATCATGTATGCCCATTTCCAGCATGTGGCAAAAGATTTACGAGTGACTCCAAATTAAAATCCCATGTCAAGGGCCATGAAAAGACTGGAACTCCGATCACAGCACAATATGTGCCATCATCAGATAAACCACAAAGCAGCAGTAAGCCTGCGACACCAGCAACAACTAAGCCTACAACACCAGCAGCAACGAAGACGACAACACCTGCATCAACTAAGCCTACAACACCAGCACCCACAAGCTTTGCTGAGCGACCATATGTCTGCCCATATGATGGTTGTGGGAAAGCCTACATTCACAGTTACAAATTGAACCTTCATCTAAAAACTCAGCATCCTGAACATGGTCAAGAAGAGAATGGTAGGATTGCTGCACATGCAAGTGAGCATGCTGTAAATGATCGTGCCAATCAGTATAACTATGCTGAGATTGTCGACCTTGCACCGAATCCAAAAAGGAGCAAGACAAATTCAGGGCATAAGACCCCCTCATCTAATAAAGCCTACAATGTCAAGATTTCTAGCGTGTTGCCTGCTGATATCAGTGGAGTGAAGAATCAGTGGCCAGGTAAGTATGAAGATGACAGTGAAGAGACAGAAGAAGACCAGGGCAACAACATTGAAGATGGCTGGAGATATGGTAACCAGAATGCCGATGATGAGGAAACAGAATATGAAGATTAACCAAACGATTCTCTTTTGTCCTTTACTAACATCCTGCTGCAATATATGCACTAACTAGACAGTAGACGTGGTGGCTGATACCTTTACTAATCTGCGTGCATTCTGAACCCTGGAAGTAGATTAGAGAAGTGCTGTTCTTGAGAGTAGTAGAATCAGATGGCCGTGATTGTGTGGTTTGGTCATAAATAGTCTTTGTATGCGACTTATTCTCGTTCAGTTTTTTATGCTCGATCTAT ]
[+] EMBL OSS1314A [ TAGGCCGCCTAGAGAGAGAAAGGAGGAGAAGGGTTCGCCGGCGGGGAATCGGATCGGCGGCATTCACTCGTCATCTCGATGGAGTACGCGGCGCCGGCAGGGGCAGGGGCAGGGGGCTACTACTACTACCCGCCGTCGCAGCAGCACAAGCCTCGCCGTCCCCCGCGGCCCGCCGGCCGCTGGGTCAAGCACTGGATCC ]
[+] EMBL AK060463 [ TGATGGTTGTGGGAAAGCCTACATTCACAGTTACAAATTGAACCTTCATCTAAAAACTCAGCATCCTGAACATGGTCAAGAAGAGAATGGTAGGATTGCTGCACATGCAAGTGAGCATGCTGTAAATGATCGTGCCAATCAGTATAACTATGCTGAGATTGTCGACCTTGCACCGAATCCAAAAAGGAGCAAGACAAATTCAGGGCATAAGACCCCCTCATCTAATAAAGCCTACAATGTCAAGATTTCTAGCGTGTTGCCTGCTGATATCAGTGGAGTGAAGAATCAGTGGCCAGGTAAGTATGAAGATGACAGTGAAGAGACAGAAGAAGACCAGGGCAACAACATTGAAGATGGCTGGAGATATGGTAACCAGAATGCCGATGATGAGGAAACAGAATATGAAGATTAACCAAACGATTCTCTTTTGTCCTTTACTAACATCCTGCTGCAATATATGCACTAACTAGACAGTAGACGTGGTGGCTGATACCTTTACTAATCTGCGTGCATTCTGAACCCTGGAAGTAGATTAGAGAAGTGCTGTTCTTGAGAGTAGTAGAATCAGATGGCCGTGATTGTGTGGTTTGGTCATAAATAGTCTTTGTATGCGACTTATTCTCGTTCAGTTTTTTATGCTCGATCTATGTATTCAATCATAAG ]
[+] EMBL BM422124 [ CACCGAATCC AAAAGGAGCAAGACAAATTCAGGGCATAAGACCCCCTCATCTAATAAAGCCTACAATGTCAAGATTTCTAGCGTGTTGCCTGCTGATATCAGTGGAGTGAAGAATCAGTGGCCAGGTAAGTATGAAGATGACAGTGAAGAGACAGAAGAAGACCAGGGCAACAACATTGAAGATGGCTGGAGATATGGTAACCAGAATGCCGATGATGAGGAAACAGAATATGAAGATTAACCCAACGATTCTCTTTTGTCCTTTACTAACATCCTGCTGCAATATATGCATTAACTAGACAGTAGACGTGGTGGCTGATACCTTTACTAATCTGCGTGCATTCTGAACCCTGGAAGTAGATTAGAGAAGTGCTGTTCTTGAGAGTAGTAGAATCAGATGGCCGTGATTGTGTGGTTTGGTCATAAATAGTCTTTGTATGCGACTTATTCTCGTTCAGTTTTTTATGCTCGATCTATGTATTCAATCATAAGTTGTGTTAAAAAAA]
consensusID : consensus_8531#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 525 fasta sequence
[CCGGAATCCCAAAAAGGACCAAACCAAATTTCCAGGGGCCATTAAAGACCCCCCCTCAATCTAATAAACCTACAATGTCAAGATTTCTAGCGTGTTCCTGCTGATATCAGTGGAGTGAAGAATCAGTGGCCACGGTAAGTATGAAGATGACCGTGAAGAGACACGAAGAAGACCACGGGCACAACACTTGAAGATGGCTGGAGATATGGTAACCAGAATGCCGATGATGAGGAAACAGAATATGAAGATTAAACCCAAACGATTCTCTTTTGGTCCCTTTTACTTAACAATCCCTCTCAAATAATTATTGCCANTTTAAACTTAAGAACCANGTTAAGAACCGTGGGTGGCCTTGAATACCCTTTTTTACCTTAAATTCCCCCATTCTGACCTGAATAATTAAAAAATCTTTTCTTTAAATATTAAATCAATCCCTATTTTGTTTGTCATAATAATCTTTTTATCCACTTATTCTCTTCATTTTTATGCTCGATCTATGTATTCAATCATAATTGTGTTAAAAAA]
[+] EMBL BM038134 [CCGGAATCCCAAAAAGGACCAAACCAAATTTCCAGGGGCCATTAAAGACCCCCCCTCAATCTAATAAACCTACAATGTCAAGATTTCTAGCGTGTTCCTGCTGATATCAGTGGAGTGAAGAATCAGTGGCCACGGTAAGTATGAAGATGACCGTGAAGAGACACGAAGAAGACCACGGGCACAACACTTGAAGATGGCTGGAGATATGGTAACCAGAATGCCGATGATGAGGAAACAGAATATGAAGATTAAACCCAAACGATTCTCTTTTGGTCCCTTTTACTTAACAATCCCTCTCAAATAATTATTGCCANTTTAAACTTAAGAACCANGTTAAGAACCGTGGGTGGCCTTGAATACCCTTTTTTACCTTAAATTCCCCCATTCTGACCTGAATAATTAAAAAATCTTTTCTTTAAATATTAAATCAATCCCTATTTTGTTTGTCATAATAATCTTTTTATCCACTTATTCTCTTCATTTTTATGCTCGATCTATGTATTCAATCATAATTGTGTTAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8531#0 CGCTGAACAAAAAAAGAAAAGAAAAGAAAAGAAAAACCCTAGGCCGCCTAGAGAGAGAAA 60
consensus_8531#1 ------------------------------------------------------------
consensus_8531#0 GGAGGAGAAGGGTTCGCCGGCGGCGGATCGGATCGGCGGCATTCACTCGTCATCTCGATG 120
consensus_8531#1 ------------------------------------------------------------
consensus_8531#0 GAGTACGCGGCGCCGGCAGGGGCAGGGGCAGGGGGCTACTACTACTACCCGCCGTCGCAG 180
consensus_8531#1 ------------------------------------------------------------
consensus_8531#0 CAGCACAAGCCTCGCCGTCCCCCGCGGCCCGCCGCCCGCTGGGTCAAGCACTGGATCCCG 240
consensus_8531#1 ------------------------------------------------------------
consensus_8531#0 CAGGATCTCGCCACCTCCTCCGGCAAATGCGCCCTCTACAAGTGGGTCAGGGAGGATGTG 300
consensus_8531#1 ------------------------------------------------------------
consensus_8531#0 TACAAGAATCTCAAGGACGGCAAGGCCGTGCCGGAGCCGGAGGCGGTGAAGCCTGAACCC 360
consensus_8531#1 ------------------------------------------------------------
consensus_8531#0 ACCACGGAGATCCTCTTCCTCTGCAGCTATGAAAACTGTGGCAAAACCTTTGTCGATGTC 420
consensus_8531#1 ------------------------------------------------------------
consensus_8531#0 GCCGCCTTAAGGAAGCACGCTCATGTGCACAACGAGAGGCAGTATATTTGTCAGGAGCCT 480
consensus_8531#1 ------------------------------------------------------------
consensus_8531#0 GGCTGTGGGAAGAAATTCGTAGATAGCTCCAAGTTGAAGAGACACCACCTTATTCATACA 540
consensus_8531#1 ------------------------------------------------------------
consensus_8531#0 GGACAGAAGGATTTTATCTGTCCCCATCCAGGCTGTGGTAAGGCCTTCTCATTGGATTTT 600
consensus_8531#1 ------------------------------------------------------------
consensus_8531#0 AACCTGCGTTCGCATCTAAAAACGCATGCGTTGGAAAACTATCATGTATGCCCATTTCCA 660
consensus_8531#1 ------------------------------------------------------------
consensus_8531#0 GCATGTGGCAAAAGATTTACGAGTGACTCCAAATTAAAATCCCATGTCAAGGGCCATGAA 720
consensus_8531#1 ------------------------------------------------------------
consensus_8531#0 AAGACTGGAACTCCGATCACAGCACAATATGTGCCATCATCAGATAAACCACAAAGCAGC 780
consensus_8531#1 ------------------------------------------------------------
consensus_8531#0 AGTAAGCCTGCGACACCAGCAACAACTAAGCCTACAACACCAGCAGCAACGAAGACGACA 840
consensus_8531#1 ------------------------------------------------------------
consensus_8531#0 ACACCTGCATCAACTAAGCCTACAACACCAGCACCCACAAGCTTTGCTGAGCGACCATAT 900
consensus_8531#1 ------------------------------------------------------------
consensus_8531#0 GTCTGCCCATATGATGGTTGTGGGAAAGCCTACATTCACAGTTACAAATTGAACCTTCAT 960
consensus_8531#1 ------------------------------------------------------------
consensus_8531#0 CTAAAAACTCAGCATCCTGAACATGGTCAAGAAGAGAATGGTAGGATTGCTGCACATGCA 1020
consensus_8531#1 ------------------------------------------------------------
consensus_8531#0 AGTGAGCATGCTGTAAATGATCGTGCCAATCAGTATAACTATGCTGAGATTGTCGACCTT 1080
consensus_8531#1 ------------------------------------------------------------
consensus_8531#0 GCACCGAATCC-AAAAAGGAGCAAGACAAATT--CAGGG--CAT--AAGACCCCCTC--- 1130
consensus_8531#1 --CCGGAATCCCAAAAAGGACCAAACCAAATTTCCAGGGGCCATTAAAGACCCCCCCTCA 58
* ****** ******** *** ****** ***** *** ********* *
consensus_8531#0 ATCTAATAAAGCCTACAATGTCAAGATTTCTAGCGTGTTGCCTGCTGATATCAGTGGAGT 1190
consensus_8531#1 ATCTAATAAA-CCTACAATGTCAAGATTTCTAGCGTGTT-CCTGCTGATATCAGTGGAGT 116
********** **************************** ********************
consensus_8531#0 GAAGAATCAGTGGCCA-GGTAAGTATGAAGATGACAGTGAAGAGACA-GAAGAAGACCAG 1248
consensus_8531#1 GAAGAATCAGTGGCCACGGTAAGTATGAAGATGACCGTGAAGAGACACGAAGAAGACCAC 176
**************** ****************** *********** ***********
consensus_8531#0 GGCAACAACA-TTGAAGATGGCTGGAGATATGGTAACCAGAATGCCGATGATGAGGAAAC 1307
consensus_8531#1 GGGCACAACACTTGAAGATGGCTGGAGATATGGTAACCAGAATGCCGATGATGAGGAAAC 236
** ****** *************************************************
consensus_8531#0 AGAATATGAAGATTAA--CCAAACGATTCTCTTTTG---TCCTTTACT-AACA-TCCTGC 1360
consensus_8531#1 AGAATATGAAGATTAAACCCAAACGATTCTCTTTTGGTCCCTTTTACTTAACAATCCCTC 296
**************** ****************** * ****** **** *** *
consensus_8531#0 TGCAATATATGC-ACTAACTAGACAGTAGACGTGGTGGCTGATACCTTTACTAATCT-GC 1418
consensus_8531#1 TCAAATAATTATTGCCANTTTAAACTTAAGAACCANGTTAAGAACCGTGGGTGGCCTTGA 356
* **** * * * * * ** * *** * * ** *
consensus_8531#0 GTGCATTCTGAACCCTGGAAGTAGATTAGA--GAAGTGCTGTTCTTGAGAGTAGTAGAAT 1476
consensus_8531#1 ATACCCTTTTTTACCTTAAATTCCCCCATTCTGACCTGAATAATTAAAAAATCTTTTCTT 416
* * * * *** ** * * ** ** * * * * * *
consensus_8531#0 CAGATGGCCG-TGATTGTGTGGTTTGGTCATAA--ATAGTCTTTGTATGCGACTTATTCT 1533
consensus_8531#1 TAAATATTAAATCAATCCCTATTTTGTTTGTCATAATAATCTTTTTAT-CCACTTATTCT 475
* ** * * * * **** * * * *** ***** *** * *********
consensus_8531#0 CGTTCAGTTTTTTATGCTCGATCTATGTATTCAATCATAAGTTGTGTTAAAAAAA 1588
consensus_8531#1 C-TTCA--TTTTTATGCTCGATCTATGTATTCAATCATAA-TTGTGTTAAAAAA- 525
* **** ******************************** *************
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||