These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8531#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1588 fasta sequence [CGCTGAACAAAAAAAGAAAAGAAAAGAAAAGAAAAACCCTAGGCCGCCTAGAGAGAGAAAGGAGGAGAAGGGTTCGCCGGCGGCGGATCGGATCGGCGGCATTCACTCGTCATCTCGATGGAGTACGCGGCGCCGGCAGGGGCAGGGGCAGGGGGCTACTACTACTACCCGCCGTCGCAGCAGCACAAGCCTCGCCGTCCCCCGCGGCCCGCCGCCCGCTGGGTCAAGCACTGGATCCCGCAGGATCTCGCCACCTCCTCCGGCAAATGCGCCCTCTACAAGTGGGTCAGGGAGGATGTGTACAAGAATCTCAAGGACGGCAAGGCCGTGCCGGAGCCGGAGGCGGTGAAGCCTGAACCCACCACGGAGATCCTCTTCCTCTGCAGCTATGAAAACTGTGGCAAAACCTTTGTCGATGTCGCCGCCTTAAGGAAGCACGCTCATGTGCACAACGAGAGGCAGTATATTTGTCAGGAGCCTGGCTGTGGGAAGAAATTCGTAGATAGCTCCAAGTTGAAGAGACACCACCTTATTCATACAGGACAGAAGGATTTTATCTGTCCCCATCCAGGCTGTGGTAAGGCCTTCTCATTGGATTTTAACCTGCGTTCGCATCTAAAAACGCATGCGTTGGAAAACTATCATGTATGCCCATTTCCAGCATGTGGCAAAAGATTTACGAGTGACTCCAAATTAAAATCCCATGTCAAGGGCCATGAAAAGACTGGAACTCCGATCACAGCACAATATGTGCCATCATCAGATAAACCACAAAGCAGCAGTAAGCCTGCGACACCAGCAACAACTAAGCCTACAACACCAGCAGCAACGAAGACGACAACACCTGCATCAACTAAGCCTACAACACCAGCACCCACAAGCTTTGCTGAGCGACCATATGTCTGCCCATATGATGGTTGTGGGAAAGCCTACATTCACAGTTACAAATTGAACCTTCATCTAAAAACTCAGCATCCTGAACATGGTCAAGAAGAGAATGGTAGGATTGCTGCACATGCAAGTGAGCATGCTGTAAATGATCGTGCCAATCAGTATAACTATGCTGAGATTGTCGACCTTGCACCGAATCCAAAAAGGAGCAAGACAAATTCAGGGCATAAGACCCCCTCATCTAATAAAGCCTACAATGTCAAGATTTCTAGCGTGTTGCCTGCTGATATCAGTGGAGTGAAGAATCAGTGGCCAGGTAAGTATGAAGATGACAGTGAAGAGACAGAAGAAGACCAGGGCAACAACATTGAAGATGGCTGGAGATATGGTAACCAGAATGCCGATGATGAGGAAACAGAATATGAAGATTAACCAAACGATTCTCTTTTGTCCTTTACTAACATCCTGCTGCAATATATGCACTAACTAGACAGTAGACGTGGTGGCTGATACCTTTACTAATCTGCGTGCATTCTGAACCCTGGAAGTAGATTAGAGAAGTGCTGTTCTTGAGAGTAGTAGAATCAGATGGCCGTGATTGTGTGGTTTGGTCATAAATAGTCTTTGTATGCGACTTATTCTCGTTCAGTTTTTTATGCTCGATCTATGTATTCAATCATAAGTTGTGTTAAAAAAA] [+] EMBL AK103444 [CGCTGAACAAAAAAAGAAAAGAAAAGAAAAGAAAAACCCTAGGCCGCCTAGAGAGAGAAAGGAGGAGAAGGGTTCGCCGGCGGCGGATCGGATCGGCGGCATTCACTCGTCATCTCGATGGAGTACGCGGCGCCGGCAGGGGCAGGGGCAGGGGGCTACTACTACTACCCGCCGTCGCAGCAGCACAAGCCTCGCCGTCCCCCGCGGCCCGCCGCCCGCTGGGTCAAGCACTGGATCCCGCAGGATCTCGCCACCTCCTCCGGCAAATGCGCCCTCTACAAGTGGGTCAGGGAGGATGTGTACAAGAATCTCAAGGACGGCAAGGCCGTGCCGGAGCCGGAGGCGGTGAAGCCTGAACCCACCACGGAGATCCTCTTCCTCTGCAGCTATGAAAACTGTGGCAAAACCTTTGTCGATGTCGCCGCCTTAAGGAAGCACGCTCATGTGCACAACGAGAGGCAGTATATTTGTCAGGAGCCTGGCTGTGGGAAGAAATTCGTAGATAGCTCCAAGTTGAAGAGACACCACCTTATTCATACAGGACAGAAGGATTTTATCTGTCCCCATCCAGGCTGTGGTAAGGCCTTCTCATTGGATTTTAACCTGCGTTCGCATCTAAAAACGCATGCGTTGGAAAACTATCATGTATGCCCATTTCCAGCATGTGGCAAAAGATTTACGAGTGACTCCAAATTAAAATCCCATGTCAAGGGCCATGAAAAGACTGGAACTCCGATCACAGCACAATATGTGCCATCATCAGATAAACCACAAAGCAGCAGTAAGCCTGCGACACCAGCAACAACTAAGCCTACAACACCAGCAGCAACGAAGACGACAACACCTGCATCAACTAAGCCTACAACACCAGCACCCACAAGCTTTGCTGAGCGACCATATGTCTGCCCATATGATGGTTGTGGGAAAGCCTACATTCACAGTTACAAATTGAACCTTCATCTAAAAACTCAGCATCCTGAACATGGTCAAGAAGAGAATGGTAGGATTGCTGCACATGCAAGTGAGCATGCTGTAAATGATCGTGCCAATCAGTATAACTATGCTGAGATTGTCGACCTTGCACCGAATCCAAAAAGGAGCAAGACAAATTCAGGGCATAAGACCCCCTCATCTAATAAAGCCTACAATGTCAAGATTTCTAGCGTGTTGCCTGCTGATATCAGTGGAGTGAAGAATCAGTGGCCAGGTAAGTATGAAGATGACAGTGAAGAGACAGAAGAAGACCAGGGCAACAACATTGAAGATGGCTGGAGATATGGTAACCAGAATGCCGATGATGAGGAAACAGAATATGAAGATTAACCAAACGATTCTCTTTTGTCCTTTACTAACATCCTGCTGCAATATATGCACTAACTAGACAGTAGACGTGGTGGCTGATACCTTTACTAATCTGCGTGCATTCTGAACCCTGGAAGTAGATTAGAGAAGTGCTGTTCTTGAGAGTAGTAGAATCAGATGGCCGTGATTGTGTGGTTTGGTCATAAATAGTCTTTGTATGCGACTTATTCTCGTTCAGTTTTTTATGCTCGATCTAT ] [+] EMBL OSS1314A [ TAGGCCGCCTAGAGAGAGAAAGGAGGAGAAGGGTTCGCCGGCGGGGAATCGGATCGGCGGCATTCACTCGTCATCTCGATGGAGTACGCGGCGCCGGCAGGGGCAGGGGCAGGGGGCTACTACTACTACCCGCCGTCGCAGCAGCACAAGCCTCGCCGTCCCCCGCGGCCCGCCGGCCGCTGGGTCAAGCACTGGATCC ] [+] EMBL AK060463 [ TGATGGTTGTGGGAAAGCCTACATTCACAGTTACAAATTGAACCTTCATCTAAAAACTCAGCATCCTGAACATGGTCAAGAAGAGAATGGTAGGATTGCTGCACATGCAAGTGAGCATGCTGTAAATGATCGTGCCAATCAGTATAACTATGCTGAGATTGTCGACCTTGCACCGAATCCAAAAAGGAGCAAGACAAATTCAGGGCATAAGACCCCCTCATCTAATAAAGCCTACAATGTCAAGATTTCTAGCGTGTTGCCTGCTGATATCAGTGGAGTGAAGAATCAGTGGCCAGGTAAGTATGAAGATGACAGTGAAGAGACAGAAGAAGACCAGGGCAACAACATTGAAGATGGCTGGAGATATGGTAACCAGAATGCCGATGATGAGGAAACAGAATATGAAGATTAACCAAACGATTCTCTTTTGTCCTTTACTAACATCCTGCTGCAATATATGCACTAACTAGACAGTAGACGTGGTGGCTGATACCTTTACTAATCTGCGTGCATTCTGAACCCTGGAAGTAGATTAGAGAAGTGCTGTTCTTGAGAGTAGTAGAATCAGATGGCCGTGATTGTGTGGTTTGGTCATAAATAGTCTTTGTATGCGACTTATTCTCGTTCAGTTTTTTATGCTCGATCTATGTATTCAATCATAAG ] [+] EMBL BM422124 [ CACCGAATCC AAAAGGAGCAAGACAAATTCAGGGCATAAGACCCCCTCATCTAATAAAGCCTACAATGTCAAGATTTCTAGCGTGTTGCCTGCTGATATCAGTGGAGTGAAGAATCAGTGGCCAGGTAAGTATGAAGATGACAGTGAAGAGACAGAAGAAGACCAGGGCAACAACATTGAAGATGGCTGGAGATATGGTAACCAGAATGCCGATGATGAGGAAACAGAATATGAAGATTAACCCAACGATTCTCTTTTGTCCTTTACTAACATCCTGCTGCAATATATGCATTAACTAGACAGTAGACGTGGTGGCTGATACCTTTACTAATCTGCGTGCATTCTGAACCCTGGAAGTAGATTAGAGAAGTGCTGTTCTTGAGAGTAGTAGAATCAGATGGCCGTGATTGTGTGGTTTGGTCATAAATAGTCTTTGTATGCGACTTATTCTCGTTCAGTTTTTTATGCTCGATCTATGTATTCAATCATAAGTTGTGTTAAAAAAA] consensusID : consensus_8531#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 525 fasta sequence [CCGGAATCCCAAAAAGGACCAAACCAAATTTCCAGGGGCCATTAAAGACCCCCCCTCAATCTAATAAACCTACAATGTCAAGATTTCTAGCGTGTTCCTGCTGATATCAGTGGAGTGAAGAATCAGTGGCCACGGTAAGTATGAAGATGACCGTGAAGAGACACGAAGAAGACCACGGGCACAACACTTGAAGATGGCTGGAGATATGGTAACCAGAATGCCGATGATGAGGAAACAGAATATGAAGATTAAACCCAAACGATTCTCTTTTGGTCCCTTTTACTTAACAATCCCTCTCAAATAATTATTGCCANTTTAAACTTAAGAACCANGTTAAGAACCGTGGGTGGCCTTGAATACCCTTTTTTACCTTAAATTCCCCCATTCTGACCTGAATAATTAAAAAATCTTTTCTTTAAATATTAAATCAATCCCTATTTTGTTTGTCATAATAATCTTTTTATCCACTTATTCTCTTCATTTTTATGCTCGATCTATGTATTCAATCATAATTGTGTTAAAAAA] [+] EMBL BM038134 [CCGGAATCCCAAAAAGGACCAAACCAAATTTCCAGGGGCCATTAAAGACCCCCCCTCAATCTAATAAACCTACAATGTCAAGATTTCTAGCGTGTTCCTGCTGATATCAGTGGAGTGAAGAATCAGTGGCCACGGTAAGTATGAAGATGACCGTGAAGAGACACGAAGAAGACCACGGGCACAACACTTGAAGATGGCTGGAGATATGGTAACCAGAATGCCGATGATGAGGAAACAGAATATGAAGATTAAACCCAAACGATTCTCTTTTGGTCCCTTTTACTTAACAATCCCTCTCAAATAATTATTGCCANTTTAAACTTAAGAACCANGTTAAGAACCGTGGGTGGCCTTGAATACCCTTTTTTACCTTAAATTCCCCCATTCTGACCTGAATAATTAAAAAATCTTTTCTTTAAATATTAAATCAATCCCTATTTTGTTTGTCATAATAATCTTTTTATCCACTTATTCTCTTCATTTTTATGCTCGATCTATGTATTCAATCATAATTGTGTTAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8531#0 CGCTGAACAAAAAAAGAAAAGAAAAGAAAAGAAAAACCCTAGGCCGCCTAGAGAGAGAAA 60 consensus_8531#1 ------------------------------------------------------------ consensus_8531#0 GGAGGAGAAGGGTTCGCCGGCGGCGGATCGGATCGGCGGCATTCACTCGTCATCTCGATG 120 consensus_8531#1 ------------------------------------------------------------ consensus_8531#0 GAGTACGCGGCGCCGGCAGGGGCAGGGGCAGGGGGCTACTACTACTACCCGCCGTCGCAG 180 consensus_8531#1 ------------------------------------------------------------ consensus_8531#0 CAGCACAAGCCTCGCCGTCCCCCGCGGCCCGCCGCCCGCTGGGTCAAGCACTGGATCCCG 240 consensus_8531#1 ------------------------------------------------------------ consensus_8531#0 CAGGATCTCGCCACCTCCTCCGGCAAATGCGCCCTCTACAAGTGGGTCAGGGAGGATGTG 300 consensus_8531#1 ------------------------------------------------------------ consensus_8531#0 TACAAGAATCTCAAGGACGGCAAGGCCGTGCCGGAGCCGGAGGCGGTGAAGCCTGAACCC 360 consensus_8531#1 ------------------------------------------------------------ consensus_8531#0 ACCACGGAGATCCTCTTCCTCTGCAGCTATGAAAACTGTGGCAAAACCTTTGTCGATGTC 420 consensus_8531#1 ------------------------------------------------------------ consensus_8531#0 GCCGCCTTAAGGAAGCACGCTCATGTGCACAACGAGAGGCAGTATATTTGTCAGGAGCCT 480 consensus_8531#1 ------------------------------------------------------------ consensus_8531#0 GGCTGTGGGAAGAAATTCGTAGATAGCTCCAAGTTGAAGAGACACCACCTTATTCATACA 540 consensus_8531#1 ------------------------------------------------------------ consensus_8531#0 GGACAGAAGGATTTTATCTGTCCCCATCCAGGCTGTGGTAAGGCCTTCTCATTGGATTTT 600 consensus_8531#1 ------------------------------------------------------------ consensus_8531#0 AACCTGCGTTCGCATCTAAAAACGCATGCGTTGGAAAACTATCATGTATGCCCATTTCCA 660 consensus_8531#1 ------------------------------------------------------------ consensus_8531#0 GCATGTGGCAAAAGATTTACGAGTGACTCCAAATTAAAATCCCATGTCAAGGGCCATGAA 720 consensus_8531#1 ------------------------------------------------------------ consensus_8531#0 AAGACTGGAACTCCGATCACAGCACAATATGTGCCATCATCAGATAAACCACAAAGCAGC 780 consensus_8531#1 ------------------------------------------------------------ consensus_8531#0 AGTAAGCCTGCGACACCAGCAACAACTAAGCCTACAACACCAGCAGCAACGAAGACGACA 840 consensus_8531#1 ------------------------------------------------------------ consensus_8531#0 ACACCTGCATCAACTAAGCCTACAACACCAGCACCCACAAGCTTTGCTGAGCGACCATAT 900 consensus_8531#1 ------------------------------------------------------------ consensus_8531#0 GTCTGCCCATATGATGGTTGTGGGAAAGCCTACATTCACAGTTACAAATTGAACCTTCAT 960 consensus_8531#1 ------------------------------------------------------------ consensus_8531#0 CTAAAAACTCAGCATCCTGAACATGGTCAAGAAGAGAATGGTAGGATTGCTGCACATGCA 1020 consensus_8531#1 ------------------------------------------------------------ consensus_8531#0 AGTGAGCATGCTGTAAATGATCGTGCCAATCAGTATAACTATGCTGAGATTGTCGACCTT 1080 consensus_8531#1 ------------------------------------------------------------ consensus_8531#0 GCACCGAATCC-AAAAAGGAGCAAGACAAATT--CAGGG--CAT--AAGACCCCCTC--- 1130 consensus_8531#1 --CCGGAATCCCAAAAAGGACCAAACCAAATTTCCAGGGGCCATTAAAGACCCCCCCTCA 58 * ****** ******** *** ****** ***** *** ********* * consensus_8531#0 ATCTAATAAAGCCTACAATGTCAAGATTTCTAGCGTGTTGCCTGCTGATATCAGTGGAGT 1190 consensus_8531#1 ATCTAATAAA-CCTACAATGTCAAGATTTCTAGCGTGTT-CCTGCTGATATCAGTGGAGT 116 ********** **************************** ******************** consensus_8531#0 GAAGAATCAGTGGCCA-GGTAAGTATGAAGATGACAGTGAAGAGACA-GAAGAAGACCAG 1248 consensus_8531#1 GAAGAATCAGTGGCCACGGTAAGTATGAAGATGACCGTGAAGAGACACGAAGAAGACCAC 176 **************** ****************** *********** *********** consensus_8531#0 GGCAACAACA-TTGAAGATGGCTGGAGATATGGTAACCAGAATGCCGATGATGAGGAAAC 1307 consensus_8531#1 GGGCACAACACTTGAAGATGGCTGGAGATATGGTAACCAGAATGCCGATGATGAGGAAAC 236 ** ****** ************************************************* consensus_8531#0 AGAATATGAAGATTAA--CCAAACGATTCTCTTTTG---TCCTTTACT-AACA-TCCTGC 1360 consensus_8531#1 AGAATATGAAGATTAAACCCAAACGATTCTCTTTTGGTCCCTTTTACTTAACAATCCCTC 296 **************** ****************** * ****** **** *** * consensus_8531#0 TGCAATATATGC-ACTAACTAGACAGTAGACGTGGTGGCTGATACCTTTACTAATCT-GC 1418 consensus_8531#1 TCAAATAATTATTGCCANTTTAAACTTAAGAACCANGTTAAGAACCGTGGGTGGCCTTGA 356 * **** * * * * * ** * *** * * ** * consensus_8531#0 GTGCATTCTGAACCCTGGAAGTAGATTAGA--GAAGTGCTGTTCTTGAGAGTAGTAGAAT 1476 consensus_8531#1 ATACCCTTTTTTACCTTAAATTCCCCCATTCTGACCTGAATAATTAAAAAATCTTTTCTT 416 * * * * *** ** * * ** ** * * * * * * consensus_8531#0 CAGATGGCCG-TGATTGTGTGGTTTGGTCATAA--ATAGTCTTTGTATGCGACTTATTCT 1533 consensus_8531#1 TAAATATTAAATCAATCCCTATTTTGTTTGTCATAATAATCTTTTTAT-CCACTTATTCT 475 * ** * * * * **** * * * *** ***** *** * ********* consensus_8531#0 CGTTCAGTTTTTTATGCTCGATCTATGTATTCAATCATAAGTTGTGTTAAAAAAA 1588 consensus_8531#1 C-TTCA--TTTTTATGCTCGATCTATGTATTCAATCATAA-TTGTGTTAAAAAA- 525 * **** ******************************** ************* |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||