cluster # 8533

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Oryza sativa
cluster # 8533 cluster # 8533 Sequences # 5 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8533#0 length = 895 sequences # 3

consensus_8533#1 length = 486 sequences # 1
consensus_8533#2 length = 129 sequences # 1

consensusID : consensus_8533#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 895
fasta sequence

                              [GCATTGGACCCTTCTGGGGCAACTGGTAAAACTTTGTTCCTATAATTTTTTACCCTAATGGAACCCTATACAAAATCCAAGAAAGATGAATTCCTTTTGCAGCATATACAACTAATGGTTGCAACGGACTGTTACTAGCAATCTTAACGAATAAATCATCAGGGATGCCTGTAAGCCTACCCAATCTGGTACTCTATCTACGAATGGCGAAGGAAAACCATGGTGAAAGGGATCGCCTCCTCAATGCTCCACATCAACAGCGCCTGCTTCGTCATCCATCATCTACTTCCTTAAAAATGTTAGTGCACTGCAATGGAAAACCAGCTGGCTCAATTGTAAGATATCTCAATTGACACAAGAATCTCAGCAAAGTACAGATGAAATCCAAATTATGACCAGAAGAGTGGAGCATGGCAAGGTATTTGCACCCCAAATGTTTCTCTCTGTCAGCCCTACCGAGAATGTTATAACTTGACCATGGTAAAAGTTGTACCAGATATATGCTTATTGCATGTCATTCTCAATAATTTGAACGCTTCACTTGTCAGATCAGCATAATTCCAAAAAGAAAACCACAAAAAATTGAATAATCCACAAAAGTAGCCTTCTCCCTTTTGTAGATTATTATTGGGTTGCACGACTGATATATCATCCTATAGCACCAGTAATATATGTTGTGAGGCAGACTGGCAACCCGCACCACTAGTCAGCAGAACTTGTACGAGAGCAGCAGCAAAAAGTTGGGTAGCAGACAGAACATGCCAGATATATAAGTTTTCTTTTCAATGTCCACCATACCCTATAAAGTCACCACCACCATTTTCTGATGCTATGATCAGTCCTTTGTCAGATATCCTAATGTTGAAGGGGTCATCAAGAAAACCATCCGACTGCG]

[+] EMBL CB674723             [GCATTGGACCCTTCTGGGGCAACTGGTAAAACTTTGTTCCTATAATTTTTTACCCTAATGGAACCCTATACAAAATCCAAGAAAGATGAATTCCTTTTGCAGCATATACAACTAATGGTTGCAACGGACTGTTACTAGCAATCTTAACGAATAAATCATCAGGGATGCCTGTAAGCCTACCCAATCTGGTACTCTATCTACGAATGGCGAAGGAAAACCATGGTGAAAGGGATCGCCTCCTCAATGCTCCACATCAACAGCGCCTGCTTCGTCATCCATCATCTACTTCCTTAAAAATGTTAGTGCACTGCAATGGAAAACCAGCTGGCTCAATTGTAAGATATCTCAATTGACACAAGAATCTCAGCAAAGTACAGATGAAATCCAAATTATGACCAGAAGAGTGGAGCATGGCAAGGTATTTGCACCCCAAATGTTTCTCTCTGTCAGCCCTACCGAGAATGTTATAACTTGACCATGGTAAAAGTTGTACCAGATATATGCTTATTGCATGTCATTCTCAATAATTTGAACGCTTCACTTGTCAGATCAGCATAATTCCAAAAAGAAAACCACAAAAAATTGAATAATCCACAAAAGTAGCCTTCTCCCTTTTGTAGATTATTATTGGGTTGCACGACTGATATATCATCCTATAGCACCAG                                                                                                                                                                                                                                      ]
[-] EMBL CA763844             [                            agACTTTGTTCCTATAATTTTTTACCCTAATGGAACCCTATACAAAATCCAAGAAAGATGAATTCCTTTTGCAGCATATACAACTAATGCATGCAACGGACTGTTACTAGCAATCTTAACGAATAAATCATCAGGGATGCCTGTAAGCCTACCCAATCTGGTACTCTATCTACGAATGGCGAAGGAAAACCATGGTGAAAGGGATCGCCTCCTTAATGCTCCACATCAACAGCGCCTGCTTCGT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[-] EMBL CF311205             [                                                                                                                                                                                                                                                                                                                                                  AGATATCTCAATTGACACAAGAATCTCAGCAAAGTACAGATGAAATCCAAATTATGACCAGAAGAGTGGAGCATGGCAAGGTATTTGCACCCCAAATGTTTCTCTCTGTCAGCCCTACCGAGAATGTTATAACTCGACCATGGTAAAAGTTGTACCAGATATATGCTTATTGCATGTCATTCTCAATAATTTGAACGCTTCACTTGTCAGATCAGCATAATTCCAAAAAGAAAACCACAAAAAATTGAATAATCCACAAAAGTAGCCTTCTCCCTTTTGTAGATTATTATTGGGTTGCACGACTGATATATCATCCTATAGCACAAGTAATATATGTTGTGAGGCAGACTGGCAACCCGCACCACTAGTCAGCAGAACTTGTACGAGAGCAGCAGCAAAAAGTTGGGTAGCAGACAGAACATGCCAGATATATAAGTTTTCTTTTCAATGTCCACCATACCCTATAAAGTCACCACCACCATTTTCTGATGCTATGATCAGTCCTTTGTCAGATATCCTAATGTTGAAGGGGTCATCAAGAAAACCATCCGACTGCG]




>consensus_8533#0
GCATTGGACCCTTCTGGGGCAACTGGTAAAACTTTGTTCCTATAATTTTTTACCCTAATG
GAACCCTATACAAAATCCAAGAAAGATGAATTCCTTTTGCAGCATATACAACTAATGGTT
GCAACGGACTGTTACTAGCAATCTTAACGAATAAATCATCAGGGATGCCTGTAAGCCTAC
CCAATCTGGTACTCTATCTACGAATGGCGAAGGAAAACCATGGTGAAAGGGATCGCCTCC
TCAATGCTCCACATCAACAGCGCCTGCTTCGTCATCCATCATCTACTTCCTTAAAAATGT
TAGTGCACTGCAATGGAAAACCAGCTGGCTCAATTGTAAGATATCTCAATTGACACAAGA
ATCTCAGCAAAGTACAGATGAAATCCAAATTATGACCAGAAGAGTGGAGCATGGCAAGGT
ATTTGCACCCCAAATGTTTCTCTCTGTCAGCCCTACCGAGAATGTTATAACTTGACCATG
GTAAAAGTTGTACCAGATATATGCTTATTGCATGTCATTCTCAATAATTTGAACGCTTCA
CTTGTCAGATCAGCATAATTCCAAAAAGAAAACCACAAAAAATTGAATAATCCACAAAAG
TAGCCTTCTCCCTTTTGTAGATTATTATTGGGTTGCACGACTGATATATCATCCTATAGC
ACCAGTAATATATGTTGTGAGGCAGACTGGCAACCCGCACCACTAGTCAGCAGAACTTGT
ACGAGAGCAGCAGCAAAAAGTTGGGTAGCAGACAGAACATGCCAGATATATAAGTTTTCT
TTTCAATGTCCACCATACCCTATAAAGTCACCACCACCATTTTCTGATGCTATGATCAGT
CCTTTGTCAGATATCCTAATGTTGAAGGGGTCATCAAGAAAACCATCCGACTGCG

consensusID : consensus_8533#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 486
fasta sequence

                              [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAAGACCGGAAAACTGCTTTGTTTACATTGGGGGCAACGGGAAAAACTTTGTTCCTATAATTTTTTACCCTAAGGGACCCCTTTCCAAAATCCAAAAAAAATGAATTCCTTTTGCAGCATATACAACTAATGTTTGCAACGGACTGTTTCTACCATTTTTAACAAAAAAATCACCAGGGATGCCTGTAACCCTACCCAATTTGGTCCTTTTTTTACAAATGGCAAAGGAAAACCTTGGGGAAAGGGATCGCCTCCTAAATGCTCCACATAAACAGCGCCTGCTTCGTCATCCATAATTTACTTCCTTAAAAATGTTAGGGCCCTGCAATGGAAAACCACCTGGCTCAATTGTAAAATTTCTCAATTGACCCAAAAATCTCACCAAAGTCCAGATGAAATCCAATTTTTGACCAAAAAAGTGGACCTTGGCAAGGTTTTTGCCCCCCAAA]

[+] EMBL CF311204             [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAAGACCGGAAAACTGCTTTGTTTACATTGGGGGCAACGGGAAAAACTTTGTTCCTATAATTTTTTACCCTAAGGGACCCCTTTCCAAAATCCAAAAAAAATGAATTCCTTTTGCAGCATATACAACTAATGTTTGCAACGGACTGTTTCTACCATTTTTAACAAAAAAATCACCAGGGATGCCTGTAACCCTACCCAATTTGGTCCTTTTTTTACAAATGGCAAAGGAAAACCTTGGGGAAAGGGATCGCCTCCTAAATGCTCCACATAAACAGCGCCTGCTTCGTCATCCATAATTTACTTCCTTAAAAATGTTAGGGCCCTGCAATGGAAAACCACCTGGCTCAATTGTAAAATTTCTCAATTGACCCAAAAATCTCACCAAAGTCCAGATGAAATCCAATTTTTGACCAAAAAAGTGGACCTTGGCAAGGTTTTTGCCCCCCAAA]




>consensus_8533#1
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAAGACCGGAAAACTGCTTTGTT
TACATTGGGGGCAACGGGAAAAACTTTGTTCCTATAATTTTTTACCCTAAGGGACCCCTT
TCCAAAATCCAAAAAAAATGAATTCCTTTTGCAGCATATACAACTAATGTTTGCAACGGA
CTGTTTCTACCATTTTTAACAAAAAAATCACCAGGGATGCCTGTAACCCTACCCAATTTG
GTCCTTTTTTTACAAATGGCAAAGGAAAACCTTGGGGAAAGGGATCGCCTCCTAAATGCT
CCACATAAACAGCGCCTGCTTCGTCATCCATAATTTACTTCCTTAAAAATGTTAGGGCCC
TGCAATGGAAAACCACCTGGCTCAATTGTAAAATTTCTCAATTGACCCAAAAATCTCACC
AAAGTCCAGATGAAATCCAATTTTTGACCAAAAAAGTGGACCTTGGCAAGGTTTTTGCCC
CCCAAA

consensusID : consensus_8533#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 129
fasta sequence

                              [TTGACTGTACTGAAAATAATGAACACTCTGCTGCAGTGACGCACGGATTGGTTTTCTTGATGACCCCTTCAACATTAGGATATCTGACAAAGGACTGATCATAGCATCAGAAAATGGTAAGATAAAGGA]

[+] EMBL AA753762             [TTGACTGTACTGAAAATAATGAACACTCTGCTGCAGTGACGCACGGATTGGTTTTCTTGATGACCCCTTCAACATTAGGATATCTGACAAAGGACTGATCATAGCATCAGAAAATGGTAAGATAAAGGA]




>consensus_8533#2
TTGACTGTACTGAAAATAATGAACACTCTGCTGCAGTGACGCACGGATTGGTTTTCTTGA
TGACCCCTTCAACATTAGGATATCTGACAAAGGACTGATCATAGCATCAGAAAATGGTAA
GATAAAGGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8533#0      ----------------------------------------------------GCATTGGA 8
consensus_8533#1      TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAAGACCGGAAAACTGCTTTGTT 60
consensus_8533#2      ------------------------------------------------------------
                                                                                  

consensus_8533#0      CCCTTCTGGGGCAACTGGTAAAACTTTGTTCCTATAATTTTTTACCCTAATGGAACCCTA 68
consensus_8533#1      TACATTGGGGGCAACGGGAAAAACTTTGTTCCTATAATTTTTTACCCTAAGGGACCCCTT 120
consensus_8533#2      ------------------------------------------------------------
                                                                                  

consensus_8533#0      TACAAAATCCAAGAAAGATGAATTCCTTTTGCAGCATATACAACTAATGGTTGCAACGGA 128
consensus_8533#1      TCCAAAATCCAAAAAAAATGAATTCCTTTTGCAGCATATACAACTAATGTTTGCAACGGA 180
consensus_8533#2      ------------------------------------------------------------
                                                                                  

consensus_8533#0      CTGTTACTAGCAATCTTAACGAATAAATCATCAGGGATGCCTGTAAGCCTACCCAATCTG 188
consensus_8533#1      CTGTTTCTACCATTTTTAACAAAAAAATCACCAGGGATGCCTGTAACCCTACCCAATTTG 240
consensus_8533#2      ------------------------------------------------------------
                                                                                  

consensus_8533#0      GTACTCTATCTACGAATGGCGAAGGAAAACCATGGTGAAAGGGATCGCCTCCTCAATGCT 248
consensus_8533#1      GTCCTTTTTTTACAAATGGCAAAGGAAAACCTTGGGGAAAGGGATCGCCTCCTAAATGCT 300
consensus_8533#2      ------------------------------------------------------------
                                                                                  

consensus_8533#0      CCACATCAACAGCGCCTGCTTCGTCATCCATCATCTACTTCCTTAAAAATGTT-AGTGCA 307
consensus_8533#1      CCACATAAACAGCGCCTGCTTCGTCATCCATAATTTACTTCCTTAAAAATGTT-AGGGCC 359
consensus_8533#2      ---------------------------------TTGACTGTACTGAAAATAATGAACACT 27
                                                       *  ***    * *****  * *   * 

consensus_8533#0      CTGCAATGGAAAACCAGCTGGCTCAATTGTAAGATATCTCAATTGACACAAGAATCTC-A 366
consensus_8533#1      CTGCAATGGAAAACCACCTGGCTCAATTGTAAAATTTCTCAATTGACCCAAAAATCTC-A 418
consensus_8533#2      CTGCTGCAGTGACGCA-CGGATTGGTTTTCTTGATGACCCCTTCAACATTAGGATATCTG 86
                      ****    *  *  ** * *  *   **     **  * *  *  **   *  ** **  

consensus_8533#0      GCAAAGTACAGATGAAATC--CAAATTATGACCAGAAGAGTGGAGCATGGCAAGGTATTT 424
consensus_8533#1      CCAAAGTCCAGATGAAATC--CAATTTTTGACCAAAAAAGTGGACCTTGGCAAGGTTTTT 476
consensus_8533#2      ACAAAGGACTGATCATAGCATCAGAAAATGGTAAGATAAAGGA----------------- 129
                       *****  * *** * * *  **     **   * *  *  *                  

consensus_8533#0      GCACCCCAAATGTTTCTCTCTGTCAGCCCTACCGAGAATGTTATAACTTGACCATGGTAA 484
consensus_8533#1      GCCCCCCAAA-------------------------------------------------- 486
consensus_8533#2      ------------------------------------------------------------
                                                                                  

consensus_8533#0      AAGTTGTACCAGATATATGCTTATTGCATGTCATTCTCAATAATTTGAACGCTTCACTTG 544
consensus_8533#1      ------------------------------------------------------------
consensus_8533#2      ------------------------------------------------------------
                                                                                  

consensus_8533#0      TCAGATCAGCATAATTCCAAAAAGAAAACCACAAAAAATTGAATAATCCACAAAAGTAGC 604
consensus_8533#1      ------------------------------------------------------------
consensus_8533#2      ------------------------------------------------------------
                                                                                  

consensus_8533#0      CTTCTCCCTTTTGTAGATTATTATTGGGTTGCACGACTGATATATCATCCTATAGCACCA 664
consensus_8533#1      ------------------------------------------------------------
consensus_8533#2      ------------------------------------------------------------
                                                                                  

consensus_8533#0      GTAATATATGTTGTGAGGCAGACTGGCAACCCGCACCACTAGTCAGCAGAACTTGTACGA 724
consensus_8533#1      ------------------------------------------------------------
consensus_8533#2      ------------------------------------------------------------
                                                                                  

consensus_8533#0      GAGCAGCAGCAAAAAGTTGGGTAGCAGACAGAACATGCCAGATATATAAGTTTTCTTTTC 784
consensus_8533#1      ------------------------------------------------------------
consensus_8533#2      ------------------------------------------------------------
                                                                                  

consensus_8533#0      AATGTCCACCATACCCTATAAAGTCACCACCACCATTTTCTGATGCTATGATCAGTCCTT 844
consensus_8533#1      ------------------------------------------------------------
consensus_8533#2      ------------------------------------------------------------
                                                                                  

consensus_8533#0      TGTCAGATATCCTAATGTTGAAGGGGTCATCAAGAAAACCATCCGACTGCG 895
consensus_8533#1      ---------------------------------------------------
consensus_8533#2      ---------------------------------------------------