cluster # 8538

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Oryza sativa
cluster # 8538 cluster # 8538 Sequences # 5 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8538#0 length = 1072 sequences # 3

consensus_8538#1 length = 505 sequences # 1
consensus_8538#2 length = 322 sequences # 1

consensusID : consensus_8538#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1072
fasta sequence

                              [CTATCAGTTGAAGGGAATGACACAGCGATCTGGGGAAGTGGGGAATGGTGGATGTTCCTCTCGGCCCAAAGCATGGCTGTCGGAACTATCATGGTCCGTTGGGTGTCAAAGTATTCTGATCCAATCATGGCAACAGGATGGCACATGATAATTGGTGGCCTTCCTTTGTTGGTTATATCTGTTCTCAATCATGATCCTGCGCTGAATGGGCATCTTCAAGAACTTACGCTGAATGATGTATTAGCACTTCTCTATACATCTATATTTGGCAGTGCTATCAGCTATGGTGTGTACTTCTACAATGCTACAAGAGGTAGCTTGACCACACTTAGTTCTCTCACTTTCTTAACTCCTATGTTTGCTTCCATTTTTGGGTTCCTCTATCTGGGAGAGACCTTCTCGCCTGTACAGCTTGGTGGCGCGCTTCTAACATTGGTCGCCATCTATATGGTTAACTACAAAAGCATCGTAGGCGAGAAGTAAAAGGCCGTTGCAAGATTCTTCTGGAGACACTGGCACAGATGAATGCTGTACTGAAGCACCTGTAACATTTCATTGGCGCAAAACAGCAATGTGAAGATTTAAAGTACAT-CCCACGG--TCCCAAC-ATC-TCACACAGCTTGAACTGTGAAAGAAGACAGGGATATGGTGGTATAACCTCTGAACATAGTTAGACTGGTAATTTGGGCATCAGTGCATACTTCCGAGGTTCCCAAGTTAGTCATCTACTTCATTTCGGCTTGCATTCTGAAATGGATAAAACTTGAGTGTCATCAGATGGTTAAAACATAGTTGCTATGAACTGTGTTGTGGATATCAAATTGAGGGAAGTTGCCCCTTTGTACAAGTAG-TTTGGAGCATAAAAAAATAGTTGATCGAAAGGAAGCAGCTGTATATGTTGAGCACAAGCTTCGTCTATCGATCTAAGTTCAGACACTTTCCCTGATAAATACGAAGCATGTCCCTTTTGTGAGAAAAAAGGGAACTGTGAAACTGTAGTTGATGGTGCATGTATATATACGTGTATATGTTTTCCACTGTGATATATTTTACATTATTTTATATTTTTAAAAA]

[+] EMBL AK071193             [CTATCAGTTGAAGGGAATGACACAGCGATCTGGGGAAGTGGGGAATGGTGGATGTTCCTCTCGGCCCAAAGCATGGCTGTCGGAACTATCATGGTCCGTTGGGTGTCAAAGTATTCTGATCCAATCATGGCAACAGGATGGCACATGATAATTGGTGGCCTTCCTTTGTTGGTTATATCTGTTCTCAATCATGATCCTGCGCTGAATGGGCATCTTCAAGAACTTACGCTGAATGATGTATTAGCACTTCTCTATACATCTATATTTGGCAGTGCTATCAGCTATGGTGTGTACTTCTACAATGCTACAAGAGGTAGCTTGACCACACTTAGTTCTCTCACTTTCTTAACTCCTATGTTTGCTTCCATTTTTGGGTTCCTCTATCTGGGAGAGACCTTCTCGCCTGTACAGCTTGGTGGCGCGCTTCTAACATTGGTCGCCATCTATATGGTTAACTACAAAAGCATCGTAGGCGAGAAGTAAAAGGCCGTTGCAAGATTCTTCTGGAGACACTGGCACAGATGAATGCTGTACTGAAGCACCTGTAACATTTCATTGGCGCAAAACAGCAATGTGAAGATTTAAAGTACAT CCCACGG  TCCCAAC ATC TCACACAGCTTGAACTGTGAAAGAAGACAGGGATATGGTGGTATAACCTCTGAACATAGTTAGACTGGTAATTTGGGCATCAGTGCATACTTCCGAGGTTCCCAAGTTAGTCATCTACTTCATTTCGGCTTGCATTCTGAAATGGATAAAACTTGAGTGTCATCAGATGGTTAAAACATAGTTGCTATGAACTGTGTTGTGGATATCAAATTGAGGGAAGTTGCCCCTTTGTACAAGTAG TTTGGAGCATAAAAAAATAGTTGATCGAAAGGAAGCAGCTGTATATGTTGAGCACAAGCTTCGTCTATCGATCTAAGTTCAGACACTTTCCCTGATAAATACGAAGCATGT                                                                                                                ]
[+] EMBL CA766703             [                                                                                                                                                                    TTTGTTGGTTATATCTGTTCTCAATCCTGATCCTGCGCTGAATGGGCATCTTCAAGAACTTACACTGAATGATGTATTAGCACTTCTCTATACATCTATATTTGGCAGTGCTATCAGCTATGGTGTGTACTTCTACAATGCTACAAGAGGTAGCTTGACCACACTTAGTTCTCTCACTTTCTTAACTCCTATGTTTGCTTCCATTTTTGGGTTCCTCTATCTGGGAGAGACCTTCTCGCCTGTACAGCTTGGTGGCGCGCTTCTAACATTGGTCGCCATCTATATGGTTAACTACAAAAGCATCGTAGGCGTGAAGTAAAAGGCCGTTGCAAGATTCTTCTGGAGACACTGGCACAGATGAATGCTGTACTGAAGCACCTGTAACATTTCATTGGCGCAAAACAGCAATGTGAAGATTTAAAGTACAT CCCACGG  TCCCAAC ATC TCACACAGCTTGAACTGTGAAAGAAGACAGGGATATGGTGGTATAACCTCTGAACATAGTTAGACTGGTAATTTGGGCATCAGTGCATACTTCCGAGCTTCCCAAGTTAGTCATCTACTTCATTTCGGCTTGCATTCTGAAATGGATAAAACTTGAGTGTCATCAGATGGTTAAAACATAGTTGCTATGAACTGNGNTGNGGATATCAAATTGAGGGAGGNTGCCCCTTTGTACAAGTAGNTTTGGAGCATAAAAAAATAGTTGATCGAAAGGAAGCAGCTGTATATGNTGAGCACAAGCTTCGTCTATCGATCTAAGNTCAAACACTTTNCCTG                                                                                                                                 ]
[+] EMBL BI813397             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       AAAGTACATCCCCACGGGTTCCCAACAATCTTCACACAGCTTGAACTGTGAAAGAAGACAGGGATATGGTGGTATAACCTCTGAACATAGTTAGACTGGTAATTTGGGCATCAGTGCATACTTCCGAGGTTCCCAAGTTAGTCATCTACTTCATTTCGGCTTGCATTCTGAAATGGATAAAACTTGAGTGTCATCAGATGGTTAAAACATAGTTGCTATGAACTGTGTTGTGGATATC AATTGAGGGAAGTTGCCCCTTTGTACAAGTAG TTTGGAGCATAAAAAAATAGTTGATCGAAAGGAAGCAGCTGTATATGTTGAGCACAAGCTTCGTCTATCGATCTAAGTTCAGACACTTTCCCTGATAAATACGAAGCATGTCCCTTTTGTGAGAAAAAAGGGAACTGTGAAACTGTAGTTGATGGTGCATGTATATATACGTGTATATGTTTTCCACTGTGATATATTTTACATTATTTTATATTTTTAAAAA]




>consensus_8538#0
CTATCAGTTGAAGGGAATGACACAGCGATCTGGGGAAGTGGGGAATGGTGGATGTTCCTC
TCGGCCCAAAGCATGGCTGTCGGAACTATCATGGTCCGTTGGGTGTCAAAGTATTCTGAT
CCAATCATGGCAACAGGATGGCACATGATAATTGGTGGCCTTCCTTTGTTGGTTATATCT
GTTCTCAATCATGATCCTGCGCTGAATGGGCATCTTCAAGAACTTACGCTGAATGATGTA
TTAGCACTTCTCTATACATCTATATTTGGCAGTGCTATCAGCTATGGTGTGTACTTCTAC
AATGCTACAAGAGGTAGCTTGACCACACTTAGTTCTCTCACTTTCTTAACTCCTATGTTT
GCTTCCATTTTTGGGTTCCTCTATCTGGGAGAGACCTTCTCGCCTGTACAGCTTGGTGGC
GCGCTTCTAACATTGGTCGCCATCTATATGGTTAACTACAAAAGCATCGTAGGCGAGAAG
TAAAAGGCCGTTGCAAGATTCTTCTGGAGACACTGGCACAGATGAATGCTGTACTGAAGC
ACCTGTAACATTTCATTGGCGCAAAACAGCAATGTGAAGATTTAAAGTACATCCCACGGT
CCCAACATCTCACACAGCTTGAACTGTGAAAGAAGACAGGGATATGGTGGTATAACCTCT
GAACATAGTTAGACTGGTAATTTGGGCATCAGTGCATACTTCCGAGGTTCCCAAGTTAGT
CATCTACTTCATTTCGGCTTGCATTCTGAAATGGATAAAACTTGAGTGTCATCAGATGGT
TAAAACATAGTTGCTATGAACTGTGTTGTGGATATCAAATTGAGGGAAGTTGCCCCTTTG
TACAAGTAGTTTGGAGCATAAAAAAATAGTTGATCGAAAGGAAGCAGCTGTATATGTTGA
GCACAAGCTTCGTCTATCGATCTAAGTTCAGACACTTTCCCTGATAAATACGAAGCATGT
CCCTTTTGTGAGAAAAAAGGGAACTGTGAAACTGTAGTTGATGGTGCATGTATATATACG
TGTATATGTTTTCCACTGTGATATATTTTACATTATTTTATATTTTTAAAAA

consensusID : consensus_8538#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 505
fasta sequence

                              [TNGGANCNGAAAGNAANNTATTGAACCNNTAAATTTNTTGGCAAAACCCCAANGGGGGTTAANGAATTCCCCNGTCCNAAATTTAAAANAGGTGGAATTGAAGGANACAGGAATGGGGTATAACTTNGAACTAGTTAGATGGTAATTGGGCATCNGGCAANTTCGGAGTTTCCCAAGTTAGTTCATTTATTTCATTTCGGCTGGCATTCTGAAATGGATAAAACTTGAGTGTCATCAGATGGTTAAAACATAGTTGCTATGAACTGTGTTGTGGATATCAAATTGAGGGAAGTTGCCCCTTTGTACAAGTAGTTTGGAGCATAAAAAAATAGTTGATCGAAAGGAAGCAGCTGTATATGTTGAGCACAAGCTTCGTCTATCGATCTAAGTTCAGACACTTTCCCTGATAAATACGAAGCATGTCCCTTTTGTGAGAAAAAAGGGAACTGTGAAACTGTAGTTGATGGTGCATGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AA753578             [TNGGANCNGAAAGNAANNTATTGAACCNNTAAATTTNTTGGCAAAACCCCAANGGGGGTTAANGAATTCCCCNGTCCNAAATTTAAAANAGGTGGAATTGAAGGANACAGGAATGGGGTATAACTTNGAACTAGTTAGATGGTAATTGGGCATCNGGCAANTTCGGAGTTTCCCAAGTTAGTTCATTTATTTCATTTCGGCTGGCATTCTGAAATGGATAAAACTTGAGTGTCATCAGATGGTTAAAACATAGTTGCTATGAACTGTGTTGTGGATATCAAATTGAGGGAAGTTGCCCCTTTGTACAAGTAGTTTGGAGCATAAAAAAATAGTTGATCGAAAGGAAGCAGCTGTATATGTTGAGCACAAGCTTCGTCTATCGATCTAAGTTCAGACACTTTCCCTGATAAATACGAAGCATGTCCCTTTTGTGAGAAAAAAGGGAACTGTGAAACTGTAGTTGATGGTGCATGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_8538#1
TNGGANCNGAAAGNAANNTATTGAACCNNTAAATTTNTTGGCAAAACCCCAANGGGGGTT
AANGAATTCCCCNGTCCNAAATTTAAAANAGGTGGAATTGAAGGANACAGGAATGGGGTA
TAACTTNGAACTAGTTAGATGGTAATTGGGCATCNGGCAANTTCGGAGTTTCCCAAGTTA
GTTCATTTATTTCATTTCGGCTGGCATTCTGAAATGGATAAAACTTGAGTGTCATCAGAT
GGTTAAAACATAGTTGCTATGAACTGTGTTGTGGATATCAAATTGAGGGAAGTTGCCCCT
TTGTACAAGTAGTTTGGAGCATAAAAAAATAGTTGATCGAAAGGAAGCAGCTGTATATGT
TGAGCACAAGCTTCGTCTATCGATCTAAGTTCAGACACTTTCCCTGATAAATACGAAGCA
TGTCCCTTTTGTGAGAAAAAAGGGAACTGTGAAACTGTAGTTGATGGTGCATGTAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAA

consensusID : consensus_8538#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 322
fasta sequence

                              [GCACATTTGCATGTGGGCCTCAAACCGCCATGTGGAAGGATTTAAAGGACATGCCCACCAGGTGCCCAACATGCTCACACAGGCTTGAACTGTGAAAGAAGACAGGGATATGGTGGTATAACCTCTGAACATAGTTAGACTGGTAATTTGGGCATCAGTGCATACTTCCCAGGTTCCCAAGTTAGTCATCTACTTCATTTCAGGCTTGCATTCTGAAATGGATAAAACTTGAGTGTCATCAGATGGTTAAAACATAGTTGCTTATGAACTGTGTTGTGGATATCAAATTGAGGGAAGTTGCCCCTTTGTACCAAAAAAAAAA]

[+] EMBL BI812646             [GCACATTTGCATGTGGGCCTCAAACCGCCATGTGGAAGGATTTAAAGGACATGCCCACCAGGTGCCCAACATGCTCACACAGGCTTGAACTGTGAAAGAAGACAGGGATATGGTGGTATAACCTCTGAACATAGTTAGACTGGTAATTTGGGCATCAGTGCATACTTCCCAGGTTCCCAAGTTAGTCATCTACTTCATTTCAGGCTTGCATTCTGAAATGGATAAAACTTGAGTGTCATCAGATGGTTAAAACATAGTTGCTTATGAACTGTGTTGTGGATATCAAATTGAGGGAAGTTGCCCCTTTGTACCAAAAAAAAAA]




>consensus_8538#2
GCACATTTGCATGTGGGCCTCAAACCGCCATGTGGAAGGATTTAAAGGACATGCCCACCA
GGTGCCCAACATGCTCACACAGGCTTGAACTGTGAAAGAAGACAGGGATATGGTGGTATA
ACCTCTGAACATAGTTAGACTGGTAATTTGGGCATCAGTGCATACTTCCCAGGTTCCCAA
GTTAGTCATCTACTTCATTTCAGGCTTGCATTCTGAAATGGATAAAACTTGAGTGTCATC
AGATGGTTAAAACATAGTTGCTTATGAACTGTGTTGTGGATATCAAATTGAGGGAAGTTG
CCCCTTTGTACCAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8538#0      CTATCAGTTGAAGGGAATGACACAGCGATCTGGGGAAGTGGGGAATGGTGGATGTTCCTC 60
consensus_8538#2      ------------------------------------------------------------
consensus_8538#1      ------------------------------------------------------------
                                                                                  

consensus_8538#0      TCGGCCCAAAGCATGGCTGTCGGAACTATCATGGTCCGTTGGGTGTCAAAGTATTCTGAT 120
consensus_8538#2      ------------------------------------------------------------
consensus_8538#1      ------------------------------------------------------------
                                                                                  

consensus_8538#0      CCAATCATGGCAACAGGATGGCACATGATAATTGGTGGCCTTCCTTTGTTGGTTATATCT 180
consensus_8538#2      ------------------------------------------------------------
consensus_8538#1      ------------------------------------------------------------
                                                                                  

consensus_8538#0      GTTCTCAATCATGATCCTGCGCTGAATGGGCATCTTCAAGAACTTACGCTGAATGATGTA 240
consensus_8538#2      ------------------------------------------------------------
consensus_8538#1      ------------------------------------------------------------
                                                                                  

consensus_8538#0      TTAGCACTTCTCTATACATCTATATTTGGCAGTGCTATCAGCTATGGTGTGTACTTCTAC 300
consensus_8538#2      ------------------------------------------------------------
consensus_8538#1      ------------------------------------------------------------
                                                                                  

consensus_8538#0      AATGCTACAAGAGGTAGCTTGACCACACTTAGTTCTCTCACTTTCTTAACTCCTATGTTT 360
consensus_8538#2      ------------------------------------------------------------
consensus_8538#1      ------------------------------------------------------------
                                                                                  

consensus_8538#0      GCTTCCATTTTTGGGTTCCTCTATCTGGGAGAGACCTTCTCGCCTGTACAGCTTGGTGGC 420
consensus_8538#2      ------------------------------------------------------------
consensus_8538#1      ------------------------------------------------------------
                                                                                  

consensus_8538#0      GCGCTTCTAACATTGGTCGCCATCTATATGGTTAACTACAAAAGCATCGTAGGCGAGAAG 480
consensus_8538#2      ------------------------------------------------------------
consensus_8538#1      ------------------------------------------------------------
                                                                                  

consensus_8538#0      TAAAAGGCCGTTGCAAGATTCTTCTGGAGACACTGGCACAGATGAATGCTGTACTGAAGC 540
consensus_8538#2      ----------------------------------------------------------GC 2
consensus_8538#1      ----------------------------------------------------------TN 2
                                                                                  

consensus_8538#0      ACCTGTAACATTTCATTGGCGCAAAACAGCAA----TGTGAA--GATTTAAAGTACAT-C 593
consensus_8538#2      ACATTTG-CAT---GTGGGCCTCAAACCGCCA----TGTGGAAGGATTTAAAGGACATGC 54
consensus_8538#1      GGANCNGAAAG---NAANNTATTGAACCNNTAAATTTNTTGGCAAAACCCCAANGGGGGT 59
                               *              ***    *    * *      *     *        

consensus_8538#0      CCAC--GGT-CCCAA---CAT-CTCACACAG-CTTGAACTGTGAAAGAAGACAGGGATAT 645
consensus_8538#2      CCACCAGGTGCCCAA---CATGCTCACACAGGCTTGAACTGTGAAAGAAGACAGGGATAT 111
consensus_8538#1      TAANGAATTCCCCNGTCCNAAATTTAAAANAGGTGGAATTG---AAGGANACAGGAAT-- 114
                        *     * ***      *   * * *     * *** **   *** * ***** **  

consensus_8538#0      GGTGGTATAACCTCTGAACATAGTTAGACTGGTAATTTGGGCATCAGTGCATACTTCCGA 705
consensus_8538#2      GGTGGTATAACCTCTGAACATAGTTAGACTGGTAATTTGGGCATCAGTGCATACTTCCCA 171
consensus_8538#1      -GGGGTATAACTTN-GAAC-TAGTTAGA-TGGTAATT-GGGCATCNG-GCA-ANTTCGGA 167
                       * ******** *  **** ******** ******** ******* * *** * ***  *

consensus_8538#0      GGTTCCCAAGTTAGT-CATCTACTTCATTTC-GGCTTGCATTCTGAAATGGATAAAACTT 763
consensus_8538#2      GGTTCCCAAGTTAGT-CATCTACTTCATTTCAGGCTTGCATTCTGAAATGGATAAAACTT 230
consensus_8538#1      GTTTCCCAAGTTAGTTCATTTATTTCATTTC-GGCTGGCATTCTGAAATGGATAAAACTT 226
                      * ************* *** ** ******** **** ***********************

consensus_8538#0      GAGTGTCATCAGATGGTTAAAACATAGTTGCT-ATGAACTGTGTTGTGGATATCAAATTG 822
consensus_8538#2      GAGTGTCATCAGATGGTTAAAACATAGTTGCTTATGAACTGTGTTGTGGATATCAAATTG 290
consensus_8538#1      GAGTGTCATCAGATGGTTAAAACATAGTTGCT-ATGAACTGTGTTGTGGATATCAAATTG 285
                      ******************************** ***************************

consensus_8538#0      AGGGAAGTTGCCCCTTTGTACAAGTAGTTTGGAGCATAAAAAAATAGTTGATCGAAAGGA 882
consensus_8538#2      AGGGAAGTTGCCCCTTTGTACCAAAAAAAAAA---------------------------- 322
consensus_8538#1      AGGGAAGTTGCCCCTTTGTACAAGTAGTTTGGAGCATAAAAAAATAGTTGATCGAAAGGA 345
                      ********************* *  *                                  

consensus_8538#0      AGCAGCTGTATATGTTGAGCACAAGCTTCGTCTATCGATCTAAGTTCAGACACTTTCCCT 942
consensus_8538#2      ------------------------------------------------------------
consensus_8538#1      AGCAGCTGTATATGTTGAGCACAAGCTTCGTCTATCGATCTAAGTTCAGACACTTTCCCT 405
                                                                                  

consensus_8538#0      GATAAATACGAAGCATGTCCCTTTTGTGAGAAAAAAGGGAACTGTGAAACTGTAGTTGAT 1002
consensus_8538#2      ------------------------------------------------------------
consensus_8538#1      GATAAATACGAAGCATGTCCCTTTTGTGAGAAAAAAGGGAACTGTGAAACTGTAGTTGAT 465
                                                                                  

consensus_8538#0      GGTGCATGTATATATACGTGTATATGTTTTCCACTGTGATATATTTTACATTATTTTATA 1062
consensus_8538#2      ------------------------------------------------------------
consensus_8538#1      GGTGCATGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA-------------------- 505
                                                                                  

consensus_8538#0      TTTTTAAAAA 1072
consensus_8538#2      ----------
consensus_8538#1      ----------