cluster # 8542

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Oryza sativa
cluster # 8542 cluster # 8542 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8542#0 length = 608 sequences # 4

consensus_8542#1 length = 276 sequences # 1

consensusID : consensus_8542#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 608
fasta sequence

                              [AGAACAGATTGAGTCCGTTAAGAAGTGGAGGAAGCAGAGGCAGCAAGGGGGCTTTGCCAAGGGAAATGATGATGGGCCAGATCTGAATTTTGAAGGTGACGAAGGGTTCAAGCAATCAAAGAAAAAGAGGCCTGGTGTTTCTCCTGGTGATAGGTCTGGTGGTCTTGCTAAGAAGGGTAAACAAGGAAAGAACAGGAAATCAAGGGATTCCAAGTTTGGGCATGGTGGTCGGAAAGGGCTGAAGAAGCAAAACACTGCAGAGACGACAAATGACTTCAGAGGATTCAACCAGATGGACAAGTCACAAAACAAGAGGAGAAAAATGGGTTGACGCGATATTGTAAGAATCTGCGTCTGCTTCCTTGAGCTGTATTACTAGTTGTTTTTGGTAACTTTATTTTACTGCAGTACATCGTTGCTAGATGCGAACGTTAGTTGAGATAGATTGTAGGAGGCAGTTAAAA-CAAAAGACCATTTTAT-GTTTTAACTATGCTGTTCTCCACAAGATATTTGCATGTATCTGGTGATGGCCCTTTTTCGTTGTGTGATGTGGAAGAATCAATCTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL CA767284             [AGAACAGATTGAGTCCGTTAAGAAGTGGAGGAAGCAGAGGCAGCAAGGGGGCTTTGCCAAGGGAAATGATGATGGGCCAGATCTGAATTTTGAAGGTGACGAAGGGTTCAAGCAATCAAAGAAAAAGAGGCCTGGTGTTTCTCCTGGTGATAGGTCTGGTGGTCTTGCTAAGAAGGGTAAACAAGGAAAGAACAGGAAATCAAGGGATTCCAAGTTTGGGCATGGTGGTCGGAAAGGGCTGAAGAAGCAAAACACTGCAGAGACGACAAATGACTTCAGAGGATTCAACCAGATGGACAAGTCACAAAACAAGAGGAGAAAAATGGGTTGACGCGATATTGTAAGAATCTGCGTCTGCTTCCTTGAGCTGTATTACTAGTTGTTTTTGGTAACTTTATTTTACTGCAGTACATCGNTGCTAGATGCGAACGNTAGTTGAGATAGATTGTAGGAGGCAGTTAAAACCAAAAGACCATTTTATGGTTTTAACTAT                                                                                                                     ]
[+] EMBL CA305606             [AGAACAGATTGAGTCCGTTAAGAAGTGGAGGAAGCAGAGGCAGCAAGGGGGCTTTGCCAAGGGAAATGATGATGGGCCAGATCTGAATTTTGAAGGTGACGAAGGGTTCAAGCAATCAAAGAAAAAGAGGCCTGGTGTTTCTCCTGGTGATAGGTCTGGTGGTCTTGCTAAGAAGGGTAAACAAGGAAAGAACAGGAAATCAAGGGATTCCAAGTTTGGGCATGGTGGTCGGAAAGGGCTGAAGAAGCAAAACACTGCAGAGACGACAAATGACTTCAGAGGATTCAACCAGATGGACAAGTCACAAAACAAGAGGAGAAAAATGGGTTGACGCGATATTGTAAGAATCTGCGTCTGCTTCCTTGAGCTGTATTACTAGTTGTTTTTGGTAACT                                                                                                                                                                                                                        ]
[+] EMBL CB000394             [                          GGAGGAAGCAGAGGCAGCAAGGGGGCTTTGCCCTTGGAAATGATGATGGGCCAGATCTGAATTTTGAAGGTGACGAAGGGTTCAAGCAATCAAAGAAAAAGAGGCCTGGTGTTTCTCCTGGTGATAGGTCTGGTGGTCTTGCTAAGAAGGGTAAACAAGGAAAGAACAGGAAATCAAGGGATTCCAAGTTTGGGCATGGTGGTCGGAAAGGGCTGAAGAAGCAAAACACTGCGGAGACGACAAATGACTTCAGAGGATTCAACCAGATGGACAAGTCACAAAACAAGAGGAGAAAAATGGGTTGACGCGATATTGTAAGAATCTGCGTCTGCTTCCTTGAGCTGTATTACTAGTTGTTTTTGGTAACTTTATTTTACTGCAGTACATCGTTGCTAGATGCGAACGTTAGTTGAGATAGATTGTAGGAGGCAGTTAAAA CAAAAGACCATTTTAT GTTTTAACTATGCTGTTCTCCACAAGATATTTGCATGTATCTGGTGATGGCCCTTTTTCGTTGTGTGATGTGGAAGAATCAATCTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AU173354             [                                                                                                                                                     ATAGGTCTGGTGGTCTTGCTAAGAAGGGTAAACAAGGAAAGAACAGGAAATCAAGGGATTCCAAGTTTGGGCATGGTGGTCGGAAAGGGCTGAAGAAGCAAAACACTGCGGAGACGACAAATGACTTCAGAGGATTCAACCAGATGGACAAGTCNCAAAACAAGAGGAGAAAAATGGGTTGACGCGATATTGTAAGAATCTGCGTCTGCTTCCTTGAGCTGTATTACTAGTTGTTTTTGGTAACTTTATTTTACTGCAGTACATCGTTGCTAGATGCGAACGTTAGTTGAGATAGATTGTAGGAGGCAGTTAAAA CAAAAGACCATTTTAT GTTTTAACTATGCTGTTCTCCNCAAGATATTTGCATGTATCTGGTGATGGCCCTTTTTCGTTGTGTGATGTGGAAGAATCAATCTTACCCTGGAATTAAAAAAAAAA                     ]




>consensus_8542#0
AGAACAGATTGAGTCCGTTAAGAAGTGGAGGAAGCAGAGGCAGCAAGGGGGCTTTGCCAA
GGGAAATGATGATGGGCCAGATCTGAATTTTGAAGGTGACGAAGGGTTCAAGCAATCAAA
GAAAAAGAGGCCTGGTGTTTCTCCTGGTGATAGGTCTGGTGGTCTTGCTAAGAAGGGTAA
ACAAGGAAAGAACAGGAAATCAAGGGATTCCAAGTTTGGGCATGGTGGTCGGAAAGGGCT
GAAGAAGCAAAACACTGCAGAGACGACAAATGACTTCAGAGGATTCAACCAGATGGACAA
GTCACAAAACAAGAGGAGAAAAATGGGTTGACGCGATATTGTAAGAATCTGCGTCTGCTT
CCTTGAGCTGTATTACTAGTTGTTTTTGGTAACTTTATTTTACTGCAGTACATCGTTGCT
AGATGCGAACGTTAGTTGAGATAGATTGTAGGAGGCAGTTAAAACAAAAGACCATTTTAT
GTTTTAACTATGCTGTTCTCCACAAGATATTTGCATGTATCTGGTGATGGCCCTTTTTCG
TTGTGTGATGTGGAAGAATCAATCTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAA

consensusID : consensus_8542#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 276
fasta sequence

                              [NAGTTGTTTTTGGTAACTTTATTTTACTGCAGTACANCGTTGCTAGATGCGAACGTTAGTTGAGANAGATTGTAGGAGGCAGTTAAAACAAAAGACCATTTTATGTTTTAACTATGCTGTTCNCCACAAGATATTTGCATGTANCTGGTGATGGCCCTTTTTCGTTGTGTGATGTGGAAGAATCAATCTTACCCTGGAATTANCCTAANAGTGTCTTAAGGATGCTTGGTGCACTTCCTGTTTTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AU032980             [NAGTTGTTTTTGGTAACTTTATTTTACTGCAGTACANCGTTGCTAGATGCGAACGTTAGTTGAGANAGATTGTAGGAGGCAGTTAAAACAAAAGACCATTTTATGTTTTAACTATGCTGTTCNCCACAAGATATTTGCATGTANCTGGTGATGGCCCTTTTTCGTTGTGTGATGTGGAAGAATCAATCTTACCCTGGAATTANCCTAANAGTGTCTTAAGGATGCTTGGTGCACTTCCTGTTTTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_8542#1
NAGTTGTTTTTGGTAACTTTATTTTACTGCAGTACANCGTTGCTAGATGCGAACGTTAGT
TGAGANAGATTGTAGGAGGCAGTTAAAACAAAAGACCATTTTATGTTTTAACTATGCTGT
TCNCCACAAGATATTTGCATGTANCTGGTGATGGCCCTTTTTCGTTGTGTGATGTGGAAG
AATCAATCTTACCCTGGAATTANCCTAANAGTGTCTTAAGGATGCTTGGTGCACTTCCTG
TTTTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8542#0      AGAACAGATTGAGTCCGTTAAGAAGTGGAGGAAGCAGAGGCAGCAAGGGGGCTTTGCCAA 60
consensus_8542#1      ------------------------------------------------------------
                                                                                  

consensus_8542#0      GGGAAATGATGATGGGCCAGATCTGAATTTTGAAGGTGACGAAGGGTTCAAGCAATCAAA 120
consensus_8542#1      ------------------------------------------------------------
                                                                                  

consensus_8542#0      GAAAAAGAGGCCTGGTGTTTCTCCTGGTGATAGGTCTGGTGGTCTTGCTAAGAAGGGTAA 180
consensus_8542#1      ------------------------------------------------------------
                                                                                  

consensus_8542#0      ACAAGGAAAGAACAGGAAATCAAGGGATTCCAAGTTTGGGCATGGTGGTCGGAAAGGGCT 240
consensus_8542#1      ------------------------------------------------------------
                                                                                  

consensus_8542#0      GAAGAAGCAAAACACTGCAGAGACGACAAATGACTTCAGAGGATTCAACCAGATGGACAA 300
consensus_8542#1      ------------------------------------------------------------
                                                                                  

consensus_8542#0      GTCACAAAACAAGAGGAGAAAAATGGGTTGACGCGATATTGTAAGAATCTGCGTCTGCTT 360
consensus_8542#1      ------------------------------------------------------------
                                                                                  

consensus_8542#0      CCTTGAGCTGTATTACTAGTTGTTTTTGGTAACTTTATTTTACTGCAGTACATCGTTGCT 420
consensus_8542#1      ----------------NAGTTGTTTTTGGTAACTTTATTTTACTGCAGTACANCGTTGCT 44
                                       *********************************** *******

consensus_8542#0      AGATGCGAACGTTAGTTGAGATAGATTGTAGGAGGCAGTTAAAACAAAAGACCATTTTAT 480
consensus_8542#1      AGATGCGAACGTTAGTTGAGANAGATTGTAGGAGGCAGTTAAAACAAAAGACCATTTTAT 104
                      ********************* **************************************

consensus_8542#0      GTTTTAACTATGCTGTTCTCCACAAGATATTTGCATGTATCTGGTGATGGCCCTTTTTCG 540
consensus_8542#1      GTTTTAACTATGCTGTTCNCCACAAGATATTTGCATGTANCTGGTGATGGCCCTTTTTCG 164
                      ****************** ******************** ********************

consensus_8542#0      TTGTGTGATGTGGAAGAATCAATCTTA---------------AAAAA------AAAAA-- 577
consensus_8542#1      TTGTGTGATGTGGAAGAATCAATCTTACCCTGGAATTANCCTAANAGTGTCTTAAGGATG 224
                      ***************************               ** *       **  *  

consensus_8542#0      ---------------------AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 608
consensus_8542#1      CTTGGTGCACTTCCTGTTTTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 276
                                           *******************************