These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8546#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1922 fasta sequence [AAAAATTTAGAGAGACCAACCACTCATCGTCTCTCTACTTCCATCCGCTTCAACCTTCAGGTGCGCCGCCTCGCCCTCGTCGGATCCCTAGTAGGGAGGGGAGGTCTCCGTCTGCCGGCGGGAGGCGCGGGCGCCGCCATGACCGGGACATCCTGGATAATTGACAGCCATAGAATTGCTTCAAAAATAAAAAATGCATCTGGATCGGTGGATGCCAGTAAGCACAAATGGGTTAGCAACCCAACTAAGGCTTGTCCAAGGTGCAACCACATCATTGATAACAGTGATGTTGTTCATCAATGGCCTGGTTTGCCAAGAGGTGTAAAGTTTGATCCAACTGACCAAGAATTGCTTTGGCATTTGCTTGCAAAGCATGGCAAAGTTGGTGCAAAAGCTCATCCGTTCATTGATGAATTTATTCCAACAGTCGAGGAAGATGATGGTATCTGCTATACCCATCCACAGAAACTTCCAGGTGTCAAGCAAGATGGAAGCGTATCACACTTTTTCCATAGAACATTTAAGGCCTATAATACTGGAATAAGAAAGCGCCGGAAGATAAACACTGGTGATCTTGCTGATGTCCGCTGGCACAAGACTGGTAAGACAAAGCCAGTAGTAGTTGATGGAAAACACCTTGGTTGTAAGAAATTCATGGTGCTATATATGAGCACCATGAAAGGTGGTAAACCTGAAAAGACCAATTGGGTGATGCATCAGTACCACCTAGGAACTGGGGAAGATGAGGTAGAAGGGCAGTATGTTGTCTCTAAATTATTGTTCCCAGC-ACAGTTTAAACCTGGGGGAGAAGAACGCACAGGACTAAACCTCTGCAGATGCTTTAGAATCTATAGTTGCTGAAGATCTTCCAAATATTCCTCCACTTCCCCTGGAAGAACATGTTTTTACCAACCAAGAACTAGAAGTTCTTGAGAAATCTGAAACTATCACTGACCAGGGAAAAGAGACTAGCGAAATAAACAACGAAGATAACGCTGTAGAAGATGTTGCGCATATGGCTACTGAGAAACCTGAGGATGGAGATAACCCCTCATCGCAAGATCCGAAATGGTGGGAAGGTGAATCCCAGTTCCTGTTAGACTCTCAGCAACTGGCAGAGAACCTTGCGATTTGCGATGAGTTCCTTCAGAGTCAGAGCCAGACCTCATGCGGCGGTGGAGATGATGAAACCGATAAGATAAAGCCCCGTCTTGCTGTTTATGCCCAGTTGCCAGTAGAGGACTTGAAGAAGGATCTGGAAGAATGCCAGAGGTTGGACCCCTCAGATGGCACAAATCTTGAGCTTGAAAATGCGTCTGAATTTCGACTGAGCCAAATTGAGTTTTCGCAGGATAGCTTTACGACGGCATGGGCTGGTGGCAAGGTGATCGATTGACATGTCTCCAAGGTGCTGTCAACACCA-TTTTGTACA-TTGAAGAAACA-ACTGAAGCCTCTTCCTTCTGCGAGACAACAGTAAAAT-GCTGTCGATATATGTGGTGAAGCAACTCTTGTCTCGGACAGTAAAAAGTCATAATTTTGGCCCGGCGGCTTGCCGGGGTAGGCAAAAGGTGAGCTTATGCGCTGGCTTGCCCCTGAATCCCTTGATGCATATGGACTGTGCACCGGTGACTATTCAATGCTAAAGATCACATATTCCTGGCTGTAAATTGTGATGGTGGATGTCTCATTTTGCTTGGATACTCTGGACCATCCGGTGGTACAAGGGGAACTTTTGCTTCTGGTTGAACTGATTACTCCAATAACTTTCGTGTTAATAACTTTTGCCATCATGATAGTGCCTATTATTTATAAATGTGGACACAAGTCATTTTCTGGAGCTTGTGGTAAAGCAGGGCTGAGAATCTCGTGCAAGCTTCATCTTGTAAATTGCAGTAATCAGCATAAGATTGTGACAAAAAAAA] [+] EMBL CB631107 [AAAAATTTAGAGAGACCAACCACTCATCGTCTCTCTACTTCCATCCGCTTCAACCTTCAGGTGCGCCGCCTCGCCCTCGTCGGATCCCTAGTAGGGAGGGGAGGTCTCCGTCTGCCGGCGGGAGGCGCGGGCGCCGCCATGACCGGGACATCCTGGATAATTGACAGCCATAGAATTGCTTCAAAAATAAAAAATGCATCTGGATCGGTGGATGCCAGTAAGCACAAATGGGTTAGCAACCCAACTAAGGCTTGTCCAAGGTGCAACCACATCATTGATAACAGTGATGTTGTTCATCAATGGCCTGGTTTGCCAAGAGGTGTAAAGTTTGATCCAACTGACCAAGAATTGCTTTGGCATTTGCTTGCAAAGCATGGCAAAGTTGGTGCAAAAGCTCATCCGTTCATTGATGAATTTATTCCAACAGTCGAGGAAGATGATGGTATCTGCTATACCCATCCACAGAAACTTCCAGGTGTCAAGCAAGATGGAAGCGTATCACACTTTTTCCATAGAACATTTAAGGCCTATAATACTGGAATAAGAAAGCGCCGGAAGATAAACACTGGTGATCTTGCTGATGTCCGCTGGCACAAGACTGGTAAGACAAAGCCAGTAGTAGTTGATGGAAAACACCTTGGTTGTAAGAAATTCATGGTGCTATATATGAGCACCATGAAAGGTGGTAAACCTGAAAAGACCAATTGGGTGATGCATCAGTACCACCTAGGAACTGGGGAAGATGAGGTAGAAGGGCAGTATGTTGTCTCTAAATTATTGTTCCCAGC ACAGTTTAAACCTGGGGGAGAAGAACGCACAGGACTAAACCTC ] [+] EMBL AK060434 [ CAGTCGAGGAAGATGATGGTATCTGCTATACCCATCCACAGAAACTTCCAGGTGTCAAGCAAGATGGAAGCGTATCACACTTTTTCCATAGAACATTTAAGGCCTATAATACTGGAATAAGAAAGCGCCGGAAGATAAACACTGGTGATCTTGCTGATGTCCGCTGGCACAAGACTGGTAAGACAAGGCCAGTAGTAGTTGATGGAAAACACCTTGGTTGTAAGAAATTCATGGTGCTATATATGAGCACCATGAAAGGTGGTAAACCTGAAAAGACCAATTGGGTGATGCATCAGTACCACCTAGGAACTGGGGAAGATGAGGTAGAAGGGCAGTATGTTGTCTCTAAATTATTGTT TCAGCAACAGTTTAAACCT GGGGAGAAGAACGCACAGGACTTAACCTCTGCAGATGCTTTAGAATCTATAGTTGCTGAAGATCTTCCAAATATTCCTCCACTTCCCCTGGAAGAACATGTTTTTACCAACCAAGAACTAGAAGTTCTTGAGAAATCTGAAACTATCACTGACCAGGGAAAAGAGACTAGCGAAATAAACAACGAAGATAACGCTGTAGAAGATGTTGCGCATATGGCTACTGAGAAACCTGAGGATGGAGATAACCCCTCATCGCAAGATCCGAAATGGTGGGAAGGTGAATCCCAGTTCCTGTTAGACTCTCAGCAACTGGCAGAGAACCTTGCGATTTGCGATGAGTTCCTTCAGAGTCAGAGCCAGACCTCATGCGGCGGTGGAGATGATGAAACCGATAAGATAAAGCCCCGTCTTGCTGTTTATGCCCAGTTGCCAGTAGAGGACTTGAAGAAGGATCTGGAAGAATGCCAGAGGTTGGACCCCTCAGATGGCACAAATCTTGAGCTTGAAAATGCGTCTGAATTTCGACTGAGCCAAATTGAGTTTTCGCAGGATAGCTTTACGACGGCATGGGCTGGTGGCAAGGTGATCGATTGACATGTCTCCAAGGTGCTGTCAACACCA TTTTGTACA TTGAAGAAACA ACTGAAGCCTCTTCCTTCTGCGAGACAACAGTAAAAT GCTGTCGATATATGTGGTGAAGCAACTCTTGTCTCGGACAGTAAAAAGTCATAATTTTGGCCCGGCGGCTTGCCGGGGTAGGCAAAAGGTGAGCTTATGCGCTGGCTTGCCCCTGAATCCCTTGATGCATATGGACTGTGCACCGGTGACTATTCAATGCTAAAGATCACATATTCCTGGCTGTAAATTGTGATGGTGGATGTCTCATTTTGCTTGGATACTCTGGACCATCCGGTGGTACAAGGGGAACTTTTGCTTCTGGTTGAACTGATTACTCCAATAACTTTCGTGTTAATAACTTTTGCCATCATGATAGTGCCTATTATTTATAAATGTGGACACAAGTCATTTTCTGGAGCTTGTGGTAAAGCAGGGCTGAGAATCTCGTGCAAGCTTCATCTTGTAAATTGCAGTAATCAGCATAAGAT ] [-] EMBL CB631108 [ TAGACTCTCAGCAACTGGCAGAGAACCTTGCGATTGNCGATGAGTTCCTTCAGAGTCAGAGCCAGACCTCATGCGGCGGTGGAGATGATGAAACCGATAAGATAAAGCCCCGTCTTGCTGTTTATGCCCAGTTGCCAGTAGAGGACTTGAAGAAGGATCTGGAAGAATGCCAGAGGTTGGACCCCTCAGATGGCACAAATCTTGAGCTTGAAAATGCGTCTGAATTTCGACTGAGCCAAATTGAGTTTTCGCAGGATAGCTTTACGACGGCATGGGCTGGTGGCAAGGTGATCGATTGACATGTCTCCAAGGTGCTGTCAACACCA TTTTGTACA TTGAAGAAACA ACTGAAGCCTCTTCCTTCTGCGAGACAACAGTAAAAT GCTGTCGATATATGTGGTGAAGCAACTCTTGTCTCGGACAGTAAAAAGTCATAATTTTGGCCCGGCGGCTTGCCGGGGTAGGCAAAAGGTGAGCTTATGCGCTGGCTTGCCCCTGAATCCCTTGATGCATATGGACTGTGCACCGGTGACTATTCAATGCTAAAGATCACATATTCCTGGCTGTAAATTGTGATGGTGGATGTCTCATTTTGCTTGGATACTCTGGACCATCCGGTGGTACAAGGGGAACTTTTGCTTCTGGTTGAACTGATTACTCCAATAACTTTCGTGTTAATAACTTTTGCCATCATGATAGTGCCTATTATTTATAAATGTGGACACAAGTCATTTTCTGGAGCTTGTGGTAAAGCAGGGCTGAGAATCTCGTGCAAGCTTCATCTTGTAAATTGCAGTAATCAGCATAAGATT ] [+] EMBL BM038348 [ AACACCACTTTTGTACACTTGAAGAAACACACTGAACCCTCTTCCTTCTGCGAGACCACAGTAAAATNCCTGTCGATATATGTGGTGAA CCACTCTTGTCTCGGACAGTAAAAAGTCATAATTTTGGCCCGGCGGCTTGCCGGGGTA GC AAAGGTGAGCTTATGCGCTGGCTTGCCCCTGAATCCCTTGATGCATATGGACTGTGCACCGGTGACTATTCAATGCTAAAGATCACATATTCCTGGCTGTAAATTGTGATGGTGGATGTCTCATTTTGCTTGGATACTCTGGACCATCCGGTGGTAC AGGGGAACTTTTGCTTCTGGTTGAACTGATTACTCC ATAACTTTCGTGTTAATAACTTTTGCCATCATGATAGTGCCTATTATTTATAAATGTGGACACAAGTCATTTTCTGGAGCTTGTGGTAAACCAGGGCTGAGAATCTCGTGCAAGCTTCATCTTGTAAATT CAGTAATCAGCATAAGATTGTGACAAAAAAAA] consensusID : consensus_8546#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 597 fasta sequence [AGACGAGACAAGGGGCTCTCAGCAACTGGCAGAGAACCTTGCGATTTGCGATGAGTTCCTTCAGAGTCAGAGCCAGACCTCATGCGGCGGTGGAGATGAACCCGATAAGATAAAGCCCCGTCTTGCTGTTTATGCCCAGTTGCCAGTAGAGGACTTGAAGAAGGATCTGGAAGAATGCCAGAGGTTGGACCCCTCAGATGGCACAAATCTTGAGCTTGAAAACGCGTTTGAATTTCGACTGAGCCAAATTGAGTTTTCGCAGGATAGCTTTACGACGGCATGGGCTGGTGGCAAGGTGATCGATTGACATGTCTCCAAGGTGCTGTCGACACCATTTTGTACATTGAAGAAACAACTGAAGCCTCTTCCTTTTGCGAGACAACAGTAAAATGCTGTCGATATATGTGGTGAAGCAACTCTTGTCTCGGACAGTAAAACGTCATATTTTGGCCCGGCTGCTTTGCCGGGGTAGGCAATAGGTGAGCTTAAGCGCTGGCTTGCCCCTGAATCCCCTGATGCATATGAACTGTGCACCGGTGACTATTCAATGCTAAAGATCCCATATTCCTGGCTGTAAAAAAAAAAAAAAAAAAAAAA] [-] EMBL CA762527 [AGACGAGACAAGGGGCTCTCAGCAACTGGCAGAGAACCTTGCGATTTGCGATGAGTTCCTTCAGAGTCAGAGCCAGACCTCATGCGGCGGTGGAGATGAACCCGATAAGATAAAGCCCCGTCTTGCTGTTTATGCCCAGTTGCCAGTAGAGGACTTGAAGAAGGATCTGGAAGAATGCCAGAGGTTGGACCCCTCAGATGGCACAAATCTTGAGCTTGAAAACGCGTTTGAATTTCGACTGAGCCAAATTGAGTTTTCGCAGGATAGCTTTACGACGGCATGGGCTGGTGGCAAGGTGATCGATTGACATGTCTCCAAGGTGCTGTCGACACCATTTTGTACATTGAAGAAACAACTGAAGCCTCTTCCTTTTGCGAGACAACAGTAAAATGCTGTCGATATATGTGGTGAAGCAACTCTTGTCTCGGACAGTAAAACGTCATATTTTGGCCCGGCTGCTTTGCCGGGGTAGGCAATAGGTGAGCTTAAGCGCTGGCTTGCCCCTGAATCCCCTGATGCATATGAACTGTGCACCGGTGACTATTCAATGCTAAAGATCCCATATTCCTGGCTGTAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8546#0 AAAAATTTAGAGAGACCAACCACTCATCGTCTCTCTACTTCCATCCGCTTCAACCTTCAG 60 consensus_8546#1 ------------------------------------------------------------ consensus_8546#0 GTGCGCCGCCTCGCCCTCGTCGGATCCCTAGTAGGGAGGGGAGGTCTCCGTCTGCCGGCG 120 consensus_8546#1 ------------------------------------------------------------ consensus_8546#0 GGAGGCGCGGGCGCCGCCATGACCGGGACATCCTGGATAATTGACAGCCATAGAATTGCT 180 consensus_8546#1 ------------------------------------------------------------ consensus_8546#0 TCAAAAATAAAAAATGCATCTGGATCGGTGGATGCCAGTAAGCACAAATGGGTTAGCAAC 240 consensus_8546#1 ------------------------------------------------------------ consensus_8546#0 CCAACTAAGGCTTGTCCAAGGTGCAACCACATCATTGATAACAGTGATGTTGTTCATCAA 300 consensus_8546#1 ------------------------------------------------------------ consensus_8546#0 TGGCCTGGTTTGCCAAGAGGTGTAAAGTTTGATCCAACTGACCAAGAATTGCTTTGGCAT 360 consensus_8546#1 ------------------------------------------------------------ consensus_8546#0 TTGCTTGCAAAGCATGGCAAAGTTGGTGCAAAAGCTCATCCGTTCATTGATGAATTTATT 420 consensus_8546#1 ------------------------------------------------------------ consensus_8546#0 CCAACAGTCGAGGAAGATGATGGTATCTGCTATACCCATCCACAGAAACTTCCAGGTGTC 480 consensus_8546#1 ------------------------------------------------------------ consensus_8546#0 AAGCAAGATGGAAGCGTATCACACTTTTTCCATAGAACATTTAAGGCCTATAATACTGGA 540 consensus_8546#1 ------------------------------------------------------------ consensus_8546#0 ATAAGAAAGCGCCGGAAGATAAACACTGGTGATCTTGCTGATGTCCGCTGGCACAAGACT 600 consensus_8546#1 ------------------------------------------------------------ consensus_8546#0 GGTAAGACAAAGCCAGTAGTAGTTGATGGAAAACACCTTGGTTGTAAGAAATTCATGGTG 660 consensus_8546#1 ------------------------------------------------------------ consensus_8546#0 CTATATATGAGCACCATGAAAGGTGGTAAACCTGAAAAGACCAATTGGGTGATGCATCAG 720 consensus_8546#1 ------------------------------------------------------------ consensus_8546#0 TACCACCTAGGAACTGGGGAAGATGAGGTAGAAGGGCAGTATGTTGTCTCTAAATTATTG 780 consensus_8546#1 ------------------------------------------------------------ consensus_8546#0 TTCCCAGCACAGTTTAAACCTGGGGGAGAAGAACGCACAGGACTAAACCTCTGCAGATGC 840 consensus_8546#1 ------------------------------------------------------------ consensus_8546#0 TTTAGAATCTATAGTTGCTGAAGATCTTCCAAATATTCCTCCACTTCCCCTGGAAGAACA 900 consensus_8546#1 ------------------------------------------------------------ consensus_8546#0 TGTTTTTACCAACCAAGAACTAGAAGTTCTTGAGAAATCTGAAACTATCACTGACCAGGG 960 consensus_8546#1 ------------------------------------------------------------ consensus_8546#0 AAAAGAGACTAGCGAAATAAACAACGAAGATAACGCTGTAGAAGATGTTGCGCATATGGC 1020 consensus_8546#1 ------------------------------------------------------------ consensus_8546#0 TACTGAGAAACCTGAGGATGGAGATAACCCCTCATCGCAAGATCCGAAATGGTGGGAAGG 1080 consensus_8546#1 ---------------------------------------------------------AGA 3 ** consensus_8546#0 TGAATCCCAGTTCCTGTTAGACTCTCAGCAACTGGCAGAGAACCTTGCGATTTGCGATGA 1140 consensus_8546#1 CGAGACAAGG---------GGCTCTCAGCAACTGGCAGAGAACCTTGCGATTTGCGATGA 54 ** * * * *************************************** consensus_8546#0 GTTCCTTCAGAGTCAGAGCCAGACCTCATGCGGCGGTGGAGATGATGAAACCGATAAGAT 1200 consensus_8546#1 GTTCCTTCAGAGTCAGAGCCAGACCTCATGCGGCGGTGGAGAT---GAACCCGATAAGAT 111 ******************************************* *** ********** consensus_8546#0 AAAGCCCCGTCTTGCTGTTTATGCCCAGTTGCCAGTAGAGGACTTGAAGAAGGATCTGGA 1260 consensus_8546#1 AAAGCCCCGTCTTGCTGTTTATGCCCAGTTGCCAGTAGAGGACTTGAAGAAGGATCTGGA 171 ************************************************************ consensus_8546#0 AGAATGCCAGAGGTTGGACCCCTCAGATGGCACAAATCTTGAGCTTGAAAATGCGTCTGA 1320 consensus_8546#1 AGAATGCCAGAGGTTGGACCCCTCAGATGGCACAAATCTTGAGCTTGAAAACGCGTTTGA 231 *************************************************** **** *** consensus_8546#0 ATTTCGACTGAGCCAAATTGAGTTTTCGCAGGATAGCTTTACGACGGCATGGGCTGGTGG 1380 consensus_8546#1 ATTTCGACTGAGCCAAATTGAGTTTTCGCAGGATAGCTTTACGACGGCATGGGCTGGTGG 291 ************************************************************ consensus_8546#0 CAAGGTGATCGATTGACATGTCTCCAAGGTGCTGTCAACACCATTTTGTACATTGAAGAA 1440 consensus_8546#1 CAAGGTGATCGATTGACATGTCTCCAAGGTGCTGTCGACACCATTTTGTACATTGAAGAA 351 ************************************ *********************** consensus_8546#0 ACAACTGAAGCCTCTTCCTTCTGCGAGACAACAGTAAAATGCTGTCGATATATGTGGTGA 1500 consensus_8546#1 ACAACTGAAGCCTCTTCCTTTTGCGAGACAACAGTAAAATGCTGTCGATATATGTGGTGA 411 ******************** *************************************** consensus_8546#0 AGCAACTCTTGTCTCGGACAGTAAAAAGTCATAATTTTGGCCCGGCGGCTT-GCCGGGGT 1559 consensus_8546#1 AGCAACTCTTGTCTCGGACAGTAAAACGTCATA-TTTTGGCCCGGCTGCTTTGCCGGGGT 470 ************************** ****** ************ **** ******** consensus_8546#0 AGGCAAAAGGTGAGCTTATGCGCTGGCTTGCCCCTGAATCCCTTGATGCATATGGACTGT 1619 consensus_8546#1 AGGCAATAGGTGAGCTTAAGCGCTGGCTTGCCCCTGAATCCCCTGATGCATATGAACTGT 530 ****** *********** *********************** *********** ***** consensus_8546#0 GCACCGGTGACTATTCAATGCTAAAGATCACATATTCCTGGCTGTAAATTGTGATGGTGG 1679 consensus_8546#1 GCACCGGTGACTATTCAATGCTAAAGATCCCATATTCCTGGCTGTAAAAAAAAAAAAAAA 590 ***************************** ****************** * consensus_8546#0 ATGTCTCATTTTGCTTGGATACTCTGGACCATCCGGTGGTACAAGGGGAACTTTTGCTTC 1739 consensus_8546#1 AAAAAAA----------------------------------------------------- 597 * consensus_8546#0 TGGTTGAACTGATTACTCCAATAACTTTCGTGTTAATAACTTTTGCCATCATGATAGTGC 1799 consensus_8546#1 ------------------------------------------------------------ consensus_8546#0 CTATTATTTATAAATGTGGACACAAGTCATTTTCTGGAGCTTGTGGTAAAGCAGGGCTGA 1859 consensus_8546#1 ------------------------------------------------------------ consensus_8546#0 GAATCTCGTGCAAGCTTCATCTTGTAAATTGCAGTAATCAGCATAAGATTGTGACAAAAA 1919 consensus_8546#1 ------------------------------------------------------------ consensus_8546#0 AAA 1922 consensus_8546#1 --- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||