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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8548#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1493 fasta sequence
[GAAGCACTCTCTGAGGCACAGGTTGTGCTTTCTACTAACACAGGGGCAGCCGATCCACTTATCAGGAGAACATGTTGTTTTGACTTGGTAATCATAGATGAAGCAGGGCAAGCAATAGAACCCTCCTGCTGGATTCCCATATTGCAGGGAAAGCGTTGCATTCTCGCTGGTGATCATTGCCAGCTTGCACCAGTAATTTTGTCAAGAAAGGCCTTAGATGGAGGGCTTGGTAAATCTTTGTTGGAAAGAGCTTCGTCATTGCACAATGGATTACTGACAACAAGGTTGACAGTGCAGCACAGAATGAATGACTCAATAGCTAGTTGGGCATCTAAAGAGATGTATCATGGACTGCTCAAATCTTCTCATTCTGTTGCTTCACAAACTCTTGCTGACTCTCCAGTTGTGAAGGCTACCTGGATAACACGGTGCCCACTGCTTTTACTTGATACTCGAATGCCATATGGGGCCCTGGACACTGGTTGTGGGGAACAAATAGACCTTTCTGGTACAGGCTCATTTTATAATGATGGAGAGGCAGATATTGTGACACAACATGTTCTCAACCTTGTACATTGTGGAGTATCTCCAACAGCGATAGCCGTTCAATCACCCTACATTGCTCAAGTGCAGTTGTTAAGAGAGAGGCTAGAAGAATATCCAGGGCTTTCTGGGGTTGAGGTTTCAACCATAGATAGCTTTCAAGGGAGGGAAGCTGATGCAGTTGTCATATCGATGGTTCGATCAAACCCACTGGGAGCGGTAGGTTTCCTTGGTGACAGCAGGCGCATGAATGTGGCTATTACAAGGGCATGCCGGCATGTCACCGTGGTATGTGACACCTCTACTA-TCTGTCACAGCACCTTCCTGGCAAGGCTCCTTCGTCATATCAGGCGATATGGGCAAGTGAAACATGTAGTGCCTGGTTCTTTGGATGGGGTGTCTGGCCTTGGCTTCAGTCAACCCACTCTGCCGTCCATCAGTTAGCACACACAACAAATGGCTTCCCACATTATCATTCGGTGGTCATGCCCATCTGAGCATGTATGTATATATGCAAAGAGGTAGACTCTGTAAATACACAAAGAACTGAAGACTGAAGAACCATAGGGTCCCCGTTCGATATTTATCTGTGAAGAGGATACAAACAGTGATTCATGGATAGACATGGAAGAGCTTGCGATGACGCATGATGCATGGCCAGTTGAT-CTGTTGTTGAGAGTAACTGGAGGCAGGAGGTT-AGTCGGTCTTGCATTTTGGATTGGTGTA-CAT-GATCGTTTCAGCAGCAGGATAAA-TTTTAGTGTCCTGGGCATCTCGAACCTACTGCATTGCCGGCTATGATGCTCCTGCTGCCTGTAATTTCATATAGTTTCTTTTTGTTGGACTTTAGGGGCCTCCCTACATTGTAATTAGTTCAAATACTGTTGACAAGGATAAATACTGCCCACAAAGGAAATGTATAGTAAATTGGCATTTCCCAAAAAAAAAAAAAA]
[+] EMBL AK058932 [GAAGCACTCTCTGAGGCACAGGTTGTGCTTTCTACTAACACAGGGGCAGCCGATCCACTTATCAGGAGAACATGTTGTTTTGACTTGGTAATCATAGATGAAGCAGGGCAAGCAATAGAACCCTCCTGCTGGATTCCCATATTGCAGGGAAAGCGTTGCATTCTCGCTGGTGATCATTGCCAGCTTGCACCAGTAATTTTGTCAAGAAAGGCCTTAGATGGAGGGCTTGGTAAATCTTTGTTGGAAAGAGCTTCGTCATTGCACAATGGATTACTGACAACAAGGTTGACAGTGCAGCACAGAATGAATGACTCAATAGCTAGTTGGGCATCTAAAGAGATGTATCATGGACTGCTCAAATCTTCTCATTCTGTTGCTTCACAAACTCTTGCTGACTCTCCAGTTGTGAAGGCTACCTGGATAACACGGTGCCCACTGCTTTTACTTGATACTCGAATGCCATATGGGGCCCTGGACACTGGTTGTGGGGAACAAATAGACCTTTCTGGTACAGGCTCATTTTATAATGATGGAGAGGCAGATATTGTGACACAACATGTTCTCAACCTTGTACATTGTGGAGTATCTCCAACAGCGATAGCCGTTCAATCACCCTACATTGCTCAAGTGCAGTTGTTAAGAGAGAGGCTAGAAGAATATCCAGGGCTTTCTGGGGTTGAGGTTTCAACCATAGATAGCTTTCAAGGGAGGGAAGCTGATGCAGTTGTCATATCGATGGTTCGATCAAACCCACTGGGAGCGGTAGGTTTCCTTGGTGACAGCAGGCGCATGAATGTGGCTATTACAAGGGCATGCCGGCATGTCACCGTGGTATGTGACACCTCTACTA TCTGTCACAGCACCTTCCTGGCAAGGCTCCTTCGTCATATCAGGCGATATGGGCAAGTGAAACATGTAGTGCCTGGTTCTTTGGATGGGGTGTCTGGCCTTGGCTTCAGTCAACCCACTCTGCCGTCCATCAGTTAGCACACACAACAAATGACTTCCCACATTATCATTCGGTGGACATGCCCATCTGAGCATGTATGTATATATGCAAAGAGGTAGACTCTGTAAATACACAAAGAACTGAAGACTGAAGAACCATAGGGTCCCCGTTCGATATTTATCTGTGAAGAGGATACAAACAGTGATTCATGGATAGACATGGAAGAGCTTGCGATGACGCATGATGCATGGCCAGTTGAT CTGTTGTTGAGAGTAACTGGAGGCAGGAGGTT AGTCGGTCTTGCATTTTGGATTGGTGTA CAT GATCGTTTCAGCAGCAGGATAAA TTTTAGTGTCCTGGGCATCTCGAACCTACTGCATTGCCGACTATGATGCTCCTGCTGCCTGTAATTTCATATAGTTTCTTTTTGTTGGACTTTAGGGGCCTCCCTACATTGTAATTAGTTCAAATACTGTTGACAAGGATAAATACTGCCCACAAAGGAAATGTATAGTAAATT ]
[+] EMBL CA764352 [ aggggGGGGAACAAATAGACCTTGCTGGTACAGGCTCATTTTATAATGATGGAGAGGCAGATATTGTGACACAACATGTTCTCAACCTTGTACATTGTGGAGTATCTCCAACAGTGATAGCCGTTCAATCACCCTACATTGCTCAAGTGCAGTTGTTAAGAGAGAGGCTAGAAAAATATCCAGGGCTTTCTGGGGTTGAGGTTTCAACCATAGATAGCTTTCAAGGGAGGGAAGCTGATGCAGTTGTCATATCGATGGTTCGATCAAACCCACTGGGAGCAGTAGGTTTCCTTGGTGACAGCAGGCGCATGAATGTGGCTATTACAAGGGCATGCCGGCATGTCACCGTGGTATGTGACACCTCTACTA TCTGTCACAGCACCTTCCTGGCAAGGCTCCTTCGTCATATCAGGCGATATGGGCAAGTGAAACATGTAGTGCCTGGTTCTTTGGATGGGGTGTCTGGCCTTGGCTTCAGTCAACCCACTCTGCCGTCCATCAGTTAGCACACACAACAAATGGCTTCCCACATTATCATTCGGTGGTCATGCCCATCTGAGCATGTATGTATATATGCAAAGAGGTAGACTCTGTAAATACACAAAGAACTGAAGACTGAAGAACCATAGGGTCCCCGTTCGATATTTATCTGTGAAGAGGATACAAACAGTGATTCATGGATAGACATGGAAGAGCTTGCGATGACGCATGATGCATGGCCAGNTGATCCTGNTGTTGAGAGTAACTGGAGGCANGANGTTAAGTCGGTCNTGCATTTTGGATTGGGGNACCATGGATCGNTTCAGCAGCAGGATAAANTTTAAGNGNCCTGGGCATCTCGAACCTACTGCATTGNCGGCTATGAAGCTCCTGCTGCCTGGAA ]
[-] EMBL CA762407 [ TACAAGGGCATGCCGGCATGTCACCGTGGTATGTGACACCTNTACTATTCTGTCACAGCACCTTCCTGGCAAGGCTCNTTTGTCATATCAGGCGATATGGGCAAGTGAAACATGTAGTGCCTGGTTCTTTGGATGGGGTGTCTGGCCTTGGCTTCAGTCAACCCACTCTGCCGTCCATCAGTTAGCACACACAACAAATGGCTTCCCACATTATCATTCGGTGGTCATGCCCATCTGAGCATGTATGTATATATGCAAAGAGGTAGACTCTGTAAATACACAAAGAACTGAAGACTGAAGAACCATAGGGTCCCCGTTCGATATTTATCTGTGAAGAGGATACAAACAGTGATTCATGGATAGACATGGAAGAGCTTGCGATGACGCATGATGCATGGCCAGTTGAT CTGTTGTTGAGAGTAACTGGAGGCAGGAGGTT AGTCGGTCTTGCATTTTGGATTGGTGTA CAT GATCGTTTCAGCAGCAGGATAAA TTTTAGTGTCCTGGGCATCTCGAACCTACTGCATTGCCGGCTATGATGCTCCTGCTGCCTGTAATTTCATATAGTTTCTTTTTGTTGGACTTTAGGGGCCTCCCTACATTGTAATTAGTTCAAGTACTGTTGACAAGGATAAATACTGCCCACAAAGGAAATGTATAGTAAATTGGCATTTCCCAAAAAAAAAAAAAA]
consensusID : consensus_8548#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 541 fasta sequence
[CTCCGTCCATCACGTTAGCACACACAGACAGAATGGCTTCCCACATTATCATTCGGTGGTCATGCCCATCTGAGCATGTATGTATATATGCCAAGAGGTAGACTCTGTAAATACACCAAGAACTGAAGACTGAAGAACCATAGGGTCCCCGTTCGATATTTATCTGTGAAGAGGATACCAACACGTGATTCATGGATAGACACTGGAAGAGCTTGCGATGACGCATGATGCATGGCCACGTTGATCTGTTGTTGAGAGTAACTGGAGGCA-GGAGGTTAGTCGGTCTTGCACTTTTGGATTGGTGTACATGATCGTTTCAGCAGCAGGATAAATTTTAGTGTCCTGGGCATCTCGAACCTACT-CATTGCCGGCTATGATGCTCCTGCTGCCTGTAATTTCATATAGTTTCTTTTTGTTGGACTTTAGGGCCTCCCTACTTGTAATTAGTTCAAGTACTGTTGACAAGGATAAATACTGCCCACAAAGGAAATGTATAGTAAATTG-CATTTCACCNTTGATTTGAAATTTTTTAGAAAAAAAA]
[+] EMBL BM421747 [CTCCGTCCATCACGTTAGCACACACAGACAGAATGGCTTCCCACATTATCATTCGGTGGTCATGCCCATCTGAGCATGTATGTATATATGCCAAGAGGTAGACTCTGTAAATACACCAAGAACTGAAGACTGAAGAACCATAGGGTCCCCGTTCGATATTTATCTGTGAAGAGGATACCAACACGTGATTCATGGATAGACACTGGAAGAGCTTGCGATGACGCATGATGCATGGCCACGTTGATCTGTTGTTGAGAGTAACTGGAGGCA GGAGGTTAGTCGGTCTTGCACTTTTGGATTGGTGTACATGATCGTTTCAGCAGCAGGATAAATTTTAGTGTCCTGGGCATCTCGAACCTACT CATTGCCGGCTATGATGCTCCTGCTGCCTGTAATTTCATATAGTTTCTTTTTGTTGGACTTTAGGGCCTCCCTACTTGTAATTAGTTCAAGTACTGTTGACAAGGATAAATACTGCCCACAAAGGAAATGTATAGTAAATTG CATTTCACCNTTGATTTGAAATTTTTTAGAAAAAAAA]
[+] EMBL BM038432 [ CGGTGTTCAT CCCATCTGAGCATGTATGTATATATCCAAAGAGGTAGACTCTGTAAATACACAAAGAACTGAAGACTGAAGAACCATAGGGTCCCCGTTCGATATTTATCTGTGAAGAGGATACCAACA GTGATTCATGGATAGACA TGGAAGAGCTTGCGATGACGCATGATGCATGGCCACGTTGATCTGTTGTTGAGAGTAACTGGAGGCACGGAGGTTAGTCGGTCTTGCA TTTTGGATTGGTGTACATGATCGTTTCAGCAGCAGGATAAATTTTAGTGTCCTGGGCATCTCGAACCTACTGCATTGCCGGCTATGATGCTCCTGCTGCCTGTAATTTCATATAGTTTCTTTTTGTTGGACTTTAGGGCCTCCCTACTTGTAATTAGTTC AGTACTGTTGACCAGGATAAATACTGCCCAC AAGGAAATGTATAGTAAATTGCCATTTCA CATTGATTTGAAATTTTTTAATAAAAA ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8548#0 GAAGCACTCTCTGAGGCACAGGTTGTGCTTTCTACTAACACAGGGGCAGCCGATCCACTT 60
consensus_8548#1 ------------------------------------------------------------
consensus_8548#0 ATCAGGAGAACATGTTGTTTTGACTTGGTAATCATAGATGAAGCAGGGCAAGCAATAGAA 120
consensus_8548#1 ------------------------------------------------------------
consensus_8548#0 CCCTCCTGCTGGATTCCCATATTGCAGGGAAAGCGTTGCATTCTCGCTGGTGATCATTGC 180
consensus_8548#1 ------------------------------------------------------------
consensus_8548#0 CAGCTTGCACCAGTAATTTTGTCAAGAAAGGCCTTAGATGGAGGGCTTGGTAAATCTTTG 240
consensus_8548#1 ------------------------------------------------------------
consensus_8548#0 TTGGAAAGAGCTTCGTCATTGCACAATGGATTACTGACAACAAGGTTGACAGTGCAGCAC 300
consensus_8548#1 ------------------------------------------------------------
consensus_8548#0 AGAATGAATGACTCAATAGCTAGTTGGGCATCTAAAGAGATGTATCATGGACTGCTCAAA 360
consensus_8548#1 ------------------------------------------------------------
consensus_8548#0 TCTTCTCATTCTGTTGCTTCACAAACTCTTGCTGACTCTCCAGTTGTGAAGGCTACCTGG 420
consensus_8548#1 ------------------------------------------------------------
consensus_8548#0 ATAACACGGTGCCCACTGCTTTTACTTGATACTCGAATGCCATATGGGGCCCTGGACACT 480
consensus_8548#1 ------------------------------------------------------------
consensus_8548#0 GGTTGTGGGGAACAAATAGACCTTTCTGGTACAGGCTCATTTTATAATGATGGAGAGGCA 540
consensus_8548#1 ------------------------------------------------------------
consensus_8548#0 GATATTGTGACACAACATGTTCTCAACCTTGTACATTGTGGAGTATCTCCAACAGCGATA 600
consensus_8548#1 ------------------------------------------------------------
consensus_8548#0 GCCGTTCAATCACCCTACATTGCTCAAGTGCAGTTGTTAAGAGAGAGGCTAGAAGAATAT 660
consensus_8548#1 ------------------------------------------------------------
consensus_8548#0 CCAGGGCTTTCTGGGGTTGAGGTTTCAACCATAGATAGCTTTCAAGGGAGGGAAGCTGAT 720
consensus_8548#1 ------------------------------------------------------------
consensus_8548#0 GCAGTTGTCATATCGATGGTTCGATCAAACCCACTGGGAGCGGTAGGTTTCCTTGGTGAC 780
consensus_8548#1 ------------------------------------------------------------
consensus_8548#0 AGCAGGCGCATGAATGTGGCTATTACAAGGGCATGCCGGCATGTCACCGTGGTATGTGAC 840
consensus_8548#1 ------------------------------------------------------------
consensus_8548#0 ACCTCTACTATCTGTCACAGCACCTTCCTGGCAAGGCTCCTTCGTCATATCAGGCGATAT 900
consensus_8548#1 ------------------------------------------------------------
consensus_8548#0 GGGCAAGTGAAACATGTAGTGCCTGGTTCTTTGGATGGGGTGTCTGGCCTTGGCTTCAGT 960
consensus_8548#1 ------------------------------------------------------------
consensus_8548#0 CAACCCACTCTGCCGTCCATCA-GTTAGCACACACA-ACA-AATGGCTTCCCACATTATC 1017
consensus_8548#1 ----------CTCCGTCCATCACGTTAGCACACACAGACAGAATGGCTTCCCACATTATC 50
********** ************* *** *******************
consensus_8548#0 ATTCGGTGGTCATGCCCATCTGAGCATGTATGTATATATGCAAAGAGGTAGACTCTGTAA 1077
consensus_8548#1 ATTCGGTGGTCATGCCCATCTGAGCATGTATGTATATATGCCAAGAGGTAGACTCTGTAA 110
***************************************** ******************
consensus_8548#0 ATACACAAAGAACTGAAGACTGAAGAACCATAGGGTCCCCGTTCGATATTTATCTGTGAA 1137
consensus_8548#1 ATACACCAAGAACTGAAGACTGAAGAACCATAGGGTCCCCGTTCGATATTTATCTGTGAA 170
****** *****************************************************
consensus_8548#0 GAGGATACAAACA-GTGATTCATGGATAGACA-TGGAAGAGCTTGCGATGACGCATGATG 1195
consensus_8548#1 GAGGATACCAACACGTGATTCATGGATAGACACTGGAAGAGCTTGCGATGACGCATGATG 230
******** **** ****************** ***************************
consensus_8548#0 CATGGCCA-GTTGATCTGTTGTTGAGAGTAACTGGAGGCAGGAGGTTAGTCGGTCTTGCA 1254
consensus_8548#1 CATGGCCACGTTGATCTGTTGTTGAGAGTAACTGGAGGCAGGAGGTTAGTCGGTCTTGCA 290
******** ***************************************************
consensus_8548#0 -TTTTGGATTGGTGTACATGATCGTTTCAGCAGCAGGATAAATTTTAGTGTCCTGGGCAT 1313
consensus_8548#1 CTTTTGGATTGGTGTACATGATCGTTTCAGCAGCAGGATAAATTTTAGTGTCCTGGGCAT 350
***********************************************************
consensus_8548#0 CTCGAACCTACTGCATTGCCGGCTATGATGCTCCTGCTGCCTGTAATTTCATATAGTTTC 1373
consensus_8548#1 CTCGAACCTACT-CATTGCCGGCTATGATGCTCCTGCTGCCTGTAATTTCATATAGTTTC 409
************ ***********************************************
consensus_8548#0 TTTTTGTTGGACTTTAGGGGCCTCCCTACATTGTAATTAGTTCAAATACTGTTGACAAGG 1433
consensus_8548#1 TTTTTGTTGGACTTTAGGG-CCTCCCTAC-TTGTAATTAGTTCAAGTACTGTTGACAAGG 467
******************* ********* *************** **************
consensus_8548#0 ATAAATACTGCCCACAAAGGAAATGTATAGTAAATTGGCATTTCCCAAAAAAAAAAAAAA 1493
consensus_8548#1 ATAAATACTGCCCACAAAGGAAATGTATAGTAAATTG-CATTTCACCNTTGATTTGAAAT 526
************************************* ****** * * ***
consensus_8548#0 ---------------
consensus_8548#1 TTTTTAGAAAAAAAA 541
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||