cluster # 8552

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Oryza sativa
cluster # 8552 cluster # 8552 Sequences # 5 consensus # 1
see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8552#0 length = 2181 sequences # 5
consensusID : consensus_8552#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 2181
fasta sequence
                              [GACTCCGTCCTCCTCTCGTCTCCTCTCGACCTCTCCTCTGCTCCGAGCATCCGACTCCGCGCGGCCGAAAGAAAAAAGAAGAAGAATAAGCTGGCTTGAAGATATGGCATCTCTTACTCCAGGGGTACTGTTAAAAGTACTAAAAAATATAAATTCTGATGTGAAAGTATGTGGAGAATATCGGTCCATTCTTCTCCAAGTTATTAGCATAGTTCCTGCAATCACTGGTTCAGAACTTTGGCCAGACCATGGTTTCTTTATAAAAGTTTCAGACTCGTCGCACTCAACGTATGTTTCTTTATCGAAGGAGGATAATGAACTCATCTTATCAAACAAACTTCAACTTGGACAGTTCATATATGTTGAAAAGGTCCAATCTAGTATCCCTGTCCCAGTTCTTGTTGGGGTTCGACCTGTTCCAGGAAGGAACCCTTGCATTGGAAATCCAAAGGATTTGATGCAGATGTCAACTCCCACTGGGATTTCAGAAGCATTGGCTCATCAACGGAAGGCTACAAAGTCAGCTGAACTGTCTGAAAGTGAAAAGGAGAACTCTCAGAGGAAGGTAGTCATCAAAGAGCAGAAGGCAGTTGTAGCTTCACGTTACATGCTTGGGATATCTAGCAACAATAGCAAAATTACCAATCTAAACTCCAGCATAGATAGTGACAAAAGTAATGGAGGAAGTAGCATATGTTCTGCAAATCAGAAGTCAGCTCCGACAAAATTCAAACAAGAATCAAAACCTCAGGAACGGCCAAATACTCCATCTCGCAGTCCTGCTAAGATAGTTTCTGCAAAACAAGAAATTAACAAGGACACACGCAAGACTAGCGCTTCTTCACCCAGTCAGAATGGCTCAGCTGTAGTGAAGAAGCAAATGTCAAAGGACAGCAAAAAGGAGTCTGCATCTGAAAAAAACTCACCACCAAAGCTTTATAAGACTTCACCACCAACACCAACACCAACACCACCACCGCCTGCAATGACTTCACCACCAAAGCTCAATTTGGCAGCAAAGCCTAATGGTACTTCCGGTACAGTTACTTCTACGCCGACTGTTAAACGAAGAGTTACTGAAACTGTCTCCTGGGACTCTCTTCCAACAAGTCTAATCAAGTCAGTAAAGGTTGTTGCAAGGAGGAAGACTATTGCTCTTGTAGTAGCAGCTGAGGCTCAAAGGGAGGCTACTGCAGCGGCCTCACTTCTTAAAGGCCTTGGAATATTCGCTGAGATCAGAAAGTCCGCTGAGGAGGATCCACATGCTGCAATTACCAAGTTTTTTCAGCTAAACCGGCTTATCATTCAGCAAAGTGTTTTTTGGAAAGATTACTCATCAGAGCCTGTCAAAGAATCTCGGCCAGAGAAGGAAAAGCCATCAAGGAAAGCCTCTGCATCTCAGAACAAAGCTGTTGCAGGTAGTACGGCAAAGAACTCTGACGATGCTTACACAAGTGAAAAGATTGACTGGGCCAGAGAGGATGGTTTCAAGGAGATCTCCAGATCATGGATTATTCTAAAGAAAGAATCACAGTCATGGTTTCTCAGTTTCTTGGAAGATGCTCTTGAAGCTGGATTCAAGTTCGAGGGCCAAAACAAGAACACCAGAGAACGAGTAAGAGGGCACTCCAAGGGCGGAGACGGGCAAATCGCGGTTCGGTTGTCGCAACTGAAGGAGA-CGAGTAACTGGCTCGACCAGTTGCATAGTGAGGTTGATAAATCTCAAGATGCTTTGGTTGAAACCA-TTGAGCAGCTGAAGCAGAAGGTGTACACCTGCTTACTTGGGACTGTCGAGACTGCGGCATCAGCACTTGAAGCCAGGTAGATGCTGTCACAGGGGCTCAGGGCTGGTTGTGTTTATTTTTTGGCTTGGAACCAGCTGAAGGGAGTACTCTGCTGTAACAGAACTGCAACACACAATATGATCGATCCTGATGCCAAGGAGAGTGAAGGAATCGATCATCTAAGTTATTTATTCCACTTGTACAAGATGACGTAGGGAGTGATTGAGGTGTAAATAGCCGC-G-GTGTGTGTGTGTGTCCA-TTTTAAGTTATGCATTAATTTATTCATTTTGGGCA-GTGGTCATG-TTGCTGTTGCGTGTTGGCAAATCTCCGATACTCTTCATGTTTGCTCAATACGAAGTACAAATCTGAAAGCTTTCCATTTTCACCCTTCAAAAAA]

[+] EMBL AK070399             [GACTCCGTCCTCCTCTCGTCTCCTCTCGACCTCTCCTCTGCTCCGAGCATCCGACTCCGCGCGGCCGAAAGAAAAAAGAAGAAGAATAAGCTGGCTTGAAGATATGGCATCTCTTACTCCAGGGGTACTGTTAAAAGTACTAAAAAATATAAATTCTGATGTGAAAGTATGTGGAGAATATCGGTCCATTCTTCTCCAAGTTATTAGCATAGTTCCTGCAATCACTGGTTCAGAACTTTGGCCAGACCATGGTTTCTTTATAAAAGTTTCAGACTCGTCGCACTCAACGTATGTTTCTTTATCGAAGGAGGATAATGAACTCATCTTATCAAACAAACTTCAACTTGGACAGTTCATATATGTTGAAAAGGTCCAATCTAGTATCCCTGTCCCAGTTCTTGTTGGGGTTCGACCTGTTCCAGGAAGGAACCCTTGCATTGGAAATCCAAAGGATTTGATGCAGATGTCAACTCCCACTGGGATTTCAGAAGCATTGGCTCATCAACGGAAGGCTACAAAGTCAGCTGAACTGTCTGAAAGTGAAAAGGAGAACTCTCAGAGGAAGGTAGTCATCAAAGAGCAGAAGGCAGTTGTAGCTTCACGTTACATGCTTGGGATATCTAGCAACAATAGCAAAATTACCAATCTAAACTCCAGCATAGATAGTGACAAAAGTAATGGAGGAAGTAGCATATGTTCTGCAAATCAGAAGTCAGCTCCGACAAAATTCAAACAAGAATCAAAACCTCAGGAACGGCCAAATACTCCATCTCGCAGTCCTGCTAAGATAGTTTCTGCAAAACAAGAAATTAACAAGGACACACGCAAGACTAGCGCTTCTTCACCCAGTCAGAATGGCTCAGCTGTAGTGAAGAAGCAAATGTCAAAGGACAGCAAAAAGGAGTCTGCATCTGAAAAAAACTCACCACCAAAGCTTTATAAGACTTCACCACCAACACCAACACCAACACCACCACCGCCTGCAATGACTTCACCACCAAAGCTCAATTTGGCAGCAAAGCCTAATGGTACTTCCGGTACAGTTACTTCTACGCCGACTGTTAAACGAAGAGTTACTGAAACTGTCTCCTGGGACTCTCTTCCAACAAGTCTAATCAAGTCAGTAAAGGTTGTTGCAAGGAGGAAGACTATTGCTCTTGTAGTAGCAGCTGAGGCTCAAAGGGAGGCTACTGCAGCGGCCTCACTTCTTAAAGGCCTTGGAATATTCGCTGAGATCAGAAAGTCCGCTGAGGAGGATCCACATGCTGCAATTACCAAGTTTTTTCAGCTAAACCGGCTTATCATTCAGCAAAGTGTTTTTTGGAAAGATTACTCATCAGAGCCTGTCAAAGAATCTCGGCCAGAGAAGGAAAAGCCATCAAGGAAAGCCTCTGCATCTCAGAACAAAGCTGTTGCAGGTAGTACGGCAAAGAACTCTGACGATGCTTACACAAGTGAAAAGATTGACTGGGCCAGAGAGGATGGTTTCAAGGAGATCTCCAGATCATGGATTATTCTAAAGAAAGAATCACAGTCATGGTTTCTCAGTTTCTTGGAAGATGCTCTTGAAGCTGGATTCAAGTTCGAGGGCCAAAACAAGAACACCAGAGAACGAGTAAGAGGGCACTCCAAGGGCGGAGACGGGCAAATCGCGGTTCGGTTGTCGCAACTGAAGGAGA CGAGTAACTGGCTCGACCAGTTGCATAGTGAGGTTGATAAATCTCAAGATGCTTTGGTTGAAACCA TTGAGCAGCTGAAGCAGAAGGTGTACACCTGCTTACTTGGGACTGTCGAGACTGCGGCATCAGCACTTGAAGCCAGGTAGATGCTGTCACAGGAGCTCAGGGCTGGTTGTGTTTATTTTTTGGCTTGGAACCAGCTGAAGGGAGTACTCTGCTGTAACAGAACTGCAACACACAATATGATCGATCCTGATGCCAAGGAGAGTGAAGGAATCGATCATCTAAGTTATTTATTCCACTTGTACAAGATGACGTAGGGAGTGATTGAGGTGTAAATAGCCGCTGTGTGTGTGTGTGTGTCCA TTTTAAGTTATGCATTAATTTATTCATTTTGGGCA GTGGTCATG TTGCTGTTGCGTGTTGGCAAATCTCCGATACTCTTCATGTTTGCTCAATACGAAGTACAAATCTG                             ]
[+] EMBL AK058391             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          GTTACATGCTTGGGATATCTAGCAACAATAGCAAAATTACCAATCTAAACTCCAGCATAGATAGTGACAAAAGTAATGGAGGAAGTAGCATATGTTCTGCAAATCAGAAGTCAGCTCCGACAAAATTCAAACAAGAATCAAAACCTCAGGAACGGCCAAATACTCCATCTCGCAGTCCTGCTAAGATAGTTTCTGCAAAACAAGAAATTAACAAGGACACACGCAAGACTAGCGCTTCTTCACCCAGTCAGAATGGCTCAGCTGTAGTGAAGAAGCAAATGTCAAAGGACAGCAAAAAGGAGTCTGCATCTGAAAAAAACTCACCACCAAAGCTTTATAAGACTTCACCACCAACACCAACACCAACACCACCACCGCCTGCAATGACTTCACCACCAAAGCTCAATTTGGCAGCAAAGCCTAATGGTACTTCCGGTACAGTTACTTCTACGCCGACTGTTAAACGAAGAGTTACTGAAACTGTCTCCTGGGACTCTCTTCCAACAAGTCTAATCAAGTCAGTAAAGGTTGTTGCAAGGAGGAAGACTATTGCTCTTGTAGTAGCAGCTGAGGCTCAAAGGGAGGCTACTGCAGCGGCCTCACTTCTTAAAGGCCTTGGAATATTCGCTGAGATCAGAAAGTCCGCTGAGGAGGATCCACATGCTGCAATTACCAAGTTTTTTCAGCTAAACCGGCTTATCATTCAGCAAAGTGTTTTTTGGAAAGATTACTCATCAGAGCCTGTCAAAGAATCTCGGCCAGAGAAGGAAAAGCCATCAAGGAAAGCCTCTGCATCTCAGAACAAAGCTGTTGCAGGTAGTACGGCAAAGAACTCTGACGATGCTTACACAAGTGAAAAGATTGACTGGGCCAGAGAGGATGGTTTCAAGGAGATCTCCAGATCATGGATTATTCTAAAGAAAGAATCACAGTCATGGTTTCTCAGTTTCTTGGAAGATGCTCTTGAAGCTGGATTCAAGTTCGAGGGCCAAAACAAGAACACCAGAGAACGAGTAAGAGGGCACTCCAAGGGCGGAGACGGGCAAATCGCGGTTCGGTTGTCGCAACTGAAGGAGA CGAGTAACTGGCTCGACCAGTTGCATAGTGAGGTTGATAAATCTCAAGATGCTTTGGTTGAAACCA TTGAGCAGCTGAAGCAGAAGGTGTACACCTGCTTACTTGGGACTGTCGAGACTGCGGCATCAGCACTTGAAGCCAGGTAGATGCTGTCACAGGAGCTCAGGGCTGGTTGTGTTTATTTTTTGGCTTGGAACCAGCTGAAGGGAGTACTCTGCTGTAACAGAACTGCAACACACAATATGATCGATCCTGATGCCAAGGAGAGTGAAGGAATCGATCATCTAAGTTATTTATTCCACTTGTACAAGATGACGTAGGGAGTGATTGAGGTGTAAATAGCCGCTGTGTGTGTGTGTGTGTCCA TTTTAAGTTATGCATTAATTTATTCATTTTGGGCA GTGGTCATG TTGCTGTTGCGTGTTGGCAAATCTCCGATACTCTTCATGTTTGCTCAATACGAAGTACAAATCTGAAAGCTT                      ]
[-] EMBL CA762237             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         aacgagaCAAGGGGATCTCCAGATCATGGATTATTCTAAAGAAAGAATCACAGTCATGGTTTCTCAGTTTCTTGGAAGATGCTCTTGAAGCTGGATTCAAGTTCGAGGGCCAAAACAAGAACACCAGAGAACGAGTAAGAGGGCACTCCAAGGGCGGAGACGGGCAAATCGCGGTTCGGTTGTCGCAACTGAAGGAGA CGAGTAACTGGCTCGACCAGTTGCATAGTGAGGTTGATAAATCTCAAGATGCTTTGGTTGAAACCA TTGAGCAGCTGAAGCAGAAGGTGTACACCTGCTTACTTGGGACTGTCGAGACTGCGGCATCAGCACTTGAAGCCAGGTAGATGCTGTCACAGGGGCTCAGGGCTGGTTGTGTTTATTTTTTGGCTTGGAACCAGCTGAAGGGAGTACTCTGCTGTAACAGAACTGCAACACACAATATGATCGATCCTGATGCCAAGGAGAGTGAAGGAATCGATCATCTAAGTTATTTATTCCACTTGTACAAGATGACGTAGGGAGTGATTGAGGTGTAAATAGCC C G CTGTGTGTGTGTGTCCA TTTTAAGTTATGCATTAATTTATTCATTTTGGGCA aaaaaaaaa                                                                                               ]
[-] EMBL CA762238             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         aacgagaCAAGGGGATCTCCAGATCATGGATTATTCTAAAGAAAGAATCACAGTCATGGTTTCTCAGTTTCTTGGAAGATGCTCTTGAAGCTGGATTCAAGTTCGAGGGCCAAAACAAGAACACCAGAGAACGAGTAAGAGGGCACTCCAAGGGCGGAGACGGGCAAATCGCGGTTCGGTTGTCGCAACTGAAGGAGA CGAGTAACTGGCTCGACCAGTTGCATAGTGAGGTTGATAAATCTCAAGATGCTTTGGTTGAAACCA TTGAGCAGCTGAAGCAGAAGGTGTACACCTGCTTACTTGGGACTGTCGAGACTGCGGCATCAGCACTTGAAGCCAGGTAGATGCTGTCACAGGGGCTCAGGGCTGGTTGTGTTTATTTTTTGGCTTGGAACCAGCTGAAGGGAGTACTCTGCTGTAACAGAACTGCAACACACAATATGATCGATCCTGATGCCAAGGAGAGTGAAGGAATCGATCATCTAAGTTATTTATTCCACTTGTACAAGATGACGTAGGGAGTGATTGAGGTGTAAATAGCC C G CTGTGTGTGTGTGTCCA TTTTAAGTTATGCATTAATTTATTCATTTTGGGCA aaaaaaaaa                                                                                               ]
[+] EMBL BM038732             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   atCTGAAGGAGACCGAGTAACTGGCTCGACCAGTTGCATAGTGAGGTTGATAAATCTCAAGATGCTTTGGTTGAAACCACTTGA CAGCTGAACCAGAAGGTGTACACCTGCTTACTTGGGACTGTCGAGACTGCGGCATCAGCACTTGAAGCCAGGTAGATGCTGTCACAGGGGCTCAGGGCT GTTGTGTTTATTTTTTGGCTTGGAACCAGCTGAAGGGAGTACTCTGCTGTAACAGAACTGCAACACACAATATGATCGATCCTGATGCCAAGGAGAGTGAAGGAATCGATCATCTAAGTTATTTATTCCACTTGTACAAGATGACGTAGGGAGTGATTGAGGTGTAAATAGCCGC    TGTGTGTGTGTGTCCACTTTTAAGTTATGCATTAATTTATTCATTTT GGCACGTGGTCATGTTTGCTGTTGCGTGTT GC AATCTCCGATACTCTTCATGTTTGCTC ATACGAAGTAC AATCTGAAAGCTTTCCATTTTCACCCTTCAAAAAA]




>consensus_8552#0
GACTCCGTCCTCCTCTCGTCTCCTCTCGACCTCTCCTCTGCTCCGAGCATCCGACTCCGC
GCGGCCGAAAGAAAAAAGAAGAAGAATAAGCTGGCTTGAAGATATGGCATCTCTTACTCC
AGGGGTACTGTTAAAAGTACTAAAAAATATAAATTCTGATGTGAAAGTATGTGGAGAATA
TCGGTCCATTCTTCTCCAAGTTATTAGCATAGTTCCTGCAATCACTGGTTCAGAACTTTG
GCCAGACCATGGTTTCTTTATAAAAGTTTCAGACTCGTCGCACTCAACGTATGTTTCTTT
ATCGAAGGAGGATAATGAACTCATCTTATCAAACAAACTTCAACTTGGACAGTTCATATA
TGTTGAAAAGGTCCAATCTAGTATCCCTGTCCCAGTTCTTGTTGGGGTTCGACCTGTTCC
AGGAAGGAACCCTTGCATTGGAAATCCAAAGGATTTGATGCAGATGTCAACTCCCACTGG
GATTTCAGAAGCATTGGCTCATCAACGGAAGGCTACAAAGTCAGCTGAACTGTCTGAAAG
TGAAAAGGAGAACTCTCAGAGGAAGGTAGTCATCAAAGAGCAGAAGGCAGTTGTAGCTTC
ACGTTACATGCTTGGGATATCTAGCAACAATAGCAAAATTACCAATCTAAACTCCAGCAT
AGATAGTGACAAAAGTAATGGAGGAAGTAGCATATGTTCTGCAAATCAGAAGTCAGCTCC
GACAAAATTCAAACAAGAATCAAAACCTCAGGAACGGCCAAATACTCCATCTCGCAGTCC
TGCTAAGATAGTTTCTGCAAAACAAGAAATTAACAAGGACACACGCAAGACTAGCGCTTC
TTCACCCAGTCAGAATGGCTCAGCTGTAGTGAAGAAGCAAATGTCAAAGGACAGCAAAAA
GGAGTCTGCATCTGAAAAAAACTCACCACCAAAGCTTTATAAGACTTCACCACCAACACC
AACACCAACACCACCACCGCCTGCAATGACTTCACCACCAAAGCTCAATTTGGCAGCAAA
GCCTAATGGTACTTCCGGTACAGTTACTTCTACGCCGACTGTTAAACGAAGAGTTACTGA
AACTGTCTCCTGGGACTCTCTTCCAACAAGTCTAATCAAGTCAGTAAAGGTTGTTGCAAG
GAGGAAGACTATTGCTCTTGTAGTAGCAGCTGAGGCTCAAAGGGAGGCTACTGCAGCGGC
CTCACTTCTTAAAGGCCTTGGAATATTCGCTGAGATCAGAAAGTCCGCTGAGGAGGATCC
ACATGCTGCAATTACCAAGTTTTTTCAGCTAAACCGGCTTATCATTCAGCAAAGTGTTTT
TTGGAAAGATTACTCATCAGAGCCTGTCAAAGAATCTCGGCCAGAGAAGGAAAAGCCATC
AAGGAAAGCCTCTGCATCTCAGAACAAAGCTGTTGCAGGTAGTACGGCAAAGAACTCTGA
CGATGCTTACACAAGTGAAAAGATTGACTGGGCCAGAGAGGATGGTTTCAAGGAGATCTC
CAGATCATGGATTATTCTAAAGAAAGAATCACAGTCATGGTTTCTCAGTTTCTTGGAAGA
TGCTCTTGAAGCTGGATTCAAGTTCGAGGGCCAAAACAAGAACACCAGAGAACGAGTAAG
AGGGCACTCCAAGGGCGGAGACGGGCAAATCGCGGTTCGGTTGTCGCAACTGAAGGAGAC
GAGTAACTGGCTCGACCAGTTGCATAGTGAGGTTGATAAATCTCAAGATGCTTTGGTTGA
AACCATTGAGCAGCTGAAGCAGAAGGTGTACACCTGCTTACTTGGGACTGTCGAGACTGC
GGCATCAGCACTTGAAGCCAGGTAGATGCTGTCACAGGGGCTCAGGGCTGGTTGTGTTTA
TTTTTTGGCTTGGAACCAGCTGAAGGGAGTACTCTGCTGTAACAGAACTGCAACACACAA
TATGATCGATCCTGATGCCAAGGAGAGTGAAGGAATCGATCATCTAAGTTATTTATTCCA
CTTGTACAAGATGACGTAGGGAGTGATTGAGGTGTAAATAGCCGCGGTGTGTGTGTGTGT
CCATTTTAAGTTATGCATTAATTTATTCATTTTGGGCAGTGGTCATGTTGCTGTTGCGTG
TTGGCAAATCTCCGATACTCTTCATGTTTGCTCAATACGAAGTACAAATCTGAAAGCTTT
CCATTTTCACCCTTCAAAAAA
clustalw multiple alignements is not computed in this case