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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8556#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1178 fasta sequence
[GATAAGATAGGCACAGACCTGCCTATATTGTCACAATTTTTCTACAGAGCATAAAAGTTGGTGCAATGTGAATGCACGTGCAATCACTGACCAAACTACCAAACTCATGCTCCTTAGTAGTTCTATCTTCAGGTTGGGTGCAATAACTGATTAATTTATTTTGGTGATTTATTGTAATTAAGATTGAAGCTGTGACAAGAAGGATTTTGAGGATCACTTCAACTGACGGAGCAGCCAAAATACTTGTTTTTTCAAGCTGGAATGATGTTCTTGATGTGCTAGAGCACTCCCTTGCCGCTAACAATATCTCTTATGTTCGGATGAAAGGAGGAAGAAAATCGCAAACAGCGCTTGCCCAGTTCAAAGGTCTGGCAAGTAGTATAAGTGGAGAGAAAGCAAAGAAGTCATTTTCCAAGATGCAACCTGCTCAAGTATTGCTAATGCTTATCCAGCATGGTGCAAATGGTCTTAATCTTTTGGAAGCACAACATGTAATATTAGTGGAGCCGTTGTTAAACCCTGCAGCTGAGGCGCAAGCTATCAGCAGGATCCATAGAGTTGGGCAAGACAAAAGCACGTTTATCCACCGTTTTATTGTGAAGAATACTATTGAAGAGAGCATCTACAAATTAAACAGGGGCAGAGCTGTTTGCTCCACGATACACCGTAAATCAAAAAATTTCAAAGATGAGCTTGTTTTGACACTGAAGGATATTGAGTCTTTATTTCCTGTGGCAACACTTGATCAGCCTTCAGAACAGGAGAATAAGAATTACGGTGGGGCAGGTGGGCATATGAGAAGTTTACCTCCATCTGTTGCAGCTGGCTTAGCTGCTGAAAGGAGGTTATTGGAGCAACATGACAACCAGCATTAAGTTATCAGCTGACTTATTCTTTCAACTGGAACTCGGAGAGGCA-ATGAAAGAGGTTGAAATAATTGATGCTGTAGATATTTTAGTT--AATTG-GATTTATCGATTGCC---TTCTTA---GTTC-TAAA-TTATGTTAAAATTACAGAAGGTAGGGATATACTATGGTCTGGAGCTTCTCGGATCATTATATTAGAATCTGGCATCAGTGATAGAATGTTTAGGACACCCCCGAGCATCGGGTATGTACTTAAGGAGATGTTGTGAAATTTAGTTAGTTAGCCTGACAGAAGCATGTGTATCATTGTATAAAAC]
[+] EMBL AK070164 [GATAAGATAGGCACAGACCTGCCTATATTGTCACAATTTTTCTACAGAGCATAAAAGTTGGTGCAATGTGAATGCACGTGCAATCACTGACCAAACTACCAAACTCATGCTCCTTAGTAGTTCTATCTTCAGGTTGGGTGCAATAACTGATTAATTTATTTTGGTGATTTATTGTAATTAAGATTGAAGCTGTGACAAGAAGGATTTTGAGGATCACTTCAACTGACGGAGCAGCCAAAATACTTGTTTTTTCAAGCTGGAATGATGTTCTTGATGTGCTAGAGCACTCCCTTGCCGCTAACAATATCTCTTATGTTCGGATGAAAGGAGGAAGAAAATCGCAAACAGCGCTTGCCCAGTTCAAAGGTCTGGCAAGTAGTATAAGTGGAGAGAAAGCAAAGAAGTCATTTTCCAAGATGCAACCTGCTCAAGTATTGCTAATGCTTATCCAGCATGGTGCAAATGGTCTTAATCTTTTGGAAGCACAACATGTAATATTAGTGGAGCCGTTGTTAAACCCTGCAGCTGAGGCGCAAGCTATCAGCAGGATCCATAGAGTTGGGCAAGACAAAAGCACGTTTATCCACCGTTTTATTGTGAAGAATACTATTGAAGAGAGCATCTACAAATTAAACAGGGGCAGAGCTGTTTGCTCCACGATACACCGTAAATCAAAAAATTTCAAAGATGAGCTTGTTTTGACACTGAAGGATATTGAGTCTTTATTTCCTGTGGCAACACTTGATCAGCCTTCAGAACAGGAGAATAAGAATTACGGTGGGGCAGGTGGGCATATGAGAAGTTTACCTCCATCTGTTGCAGCTGGCTTAGCTGCTGAAAGGAGGTTATTGGAGCAACATGACAACCAGCATTAAGTTATCAGCTGACTTATTCTTTCAACTGGAACTCGGAGAGGCA ATGAAAGAGGTTGAAATAATTGATGCTGTAGATATTTTAGTT AATTG GATTTATCGATTGCC TTCTTA GTTC TAAA TTATGTTAAAATTACAGAAGGTAGGGATATACTTTGGTCTGGAGCTTCTCGGATCATTATATTAGAATCTGGCATCAGTGATAGAATGTTTAGGACACCCCCGAGCATCGGGTATGTACTTAAGGAGATGTTGTGAAATTTAGTTAGTTAGCCTGACAGAAGCATGTGTATCATTGTATAAAA ]
[-] EMBL CB635118 [ CGTTTTATTGTGAAGAATACTATTGAAGAGAGCATCTACAAATTAAACAGGGGCAGAGGTGTTTGCTCCACGATACACCGTAAATCAAAAAATTTCAAAGATGAGCTTGTTTTGACACTGAAGGATATTGAGTTTTTATTTCCTGTGGCAACACTTGATCAGCCTTCAGAACAGGAGAATAAGAATTACGGTGGGGCCGGTGGGCATATGAGAAGTTTACCTCCATTTGTTGCAGCTGGCTTAGCTGCTGAAAGGAGGTTATTGGAGCAACATGACAACCAGCATTAAGTTATCAGCTGACTTATTTTTTCAACTGGAACTTGGAGAGGCA ATGAAAGAGGTTGAAATAATTGATGCTGTAGATATTTTAGTT AATTG GATTTATCGATTGCC TTTTTA GTTT TAAA TTATGTTAAAATTACAGAAGGTAGGGATATACTATGGTTTGGAGCTTTTCGGATCATTATATTAGAATTTGGCATCAGTGATAGAATGTTTAGGACCCCCCCGAGCATCGGGTATGTACTTAAGGAGATGTTGTGAAATTTAGTTAGTTAGCCTGACAGAAGCATGTGTATCATTGTATAAAAC]
[+] EMBL BM038982 [ TATTCTTTCAACTGGAACTCGGAGA GCANATGAAAGAGGTTGAAATAATTGATGCTGTAGATATTTTAGTT AATTG GATTTATCGATTGCC TTCTTA GTTC TAAA TTATGTTAAAATTACAGAAGGTAGGGATATACTATGGTCTGGAGCTTCTCGGATCATTATATTAGAATCTGGCATCAGTGATAGAATGTTTAGGACACCCCCGAGCATCGGGTATGTACTTAAGGAGATGTTGTGAAATTTAGTTAGTTAGCCTGACAGAAGCATGTGTATC TTGTATAAAA ]
[+] EMBL BQ908649 [ aAGTTGGAATTGTGAGT CCGATTGCCCCGTTCTTAGGTGTGCGTAAAGTTATGTTAAAATTACAGAAGGTAGGGATATACTATGGTCTGGAGCTTCTCGGATCATTATATTAGAATCTGGCATCAGTGATAGAATGTTTAGGACACCCCCGAGCATCGGGTATGTACTTAAGGAGATGTTGTGAAATTTAGTTAGTTAGCCTGACAGAAGCATGTGTATCATTGTATAAAA ]
consensusID : consensus_8556#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 548 fasta sequence
[TTGATTAGGTGAAGGACGAGACAAGGGGGATACACCGTAAATCAAAAAATTTCAAAGATGAGCTTGTTTTGACACTGAAGGATATTGAGTCTTTATTTCCTGTGGCAACACTTGATCAGCCTTCAGAACAGGAGAATAAGAATTACGGTGGGGCCGGTGGGCATATGAGAAGTTTACCTCCATCTGCTGCAGCTGGCTTAGCTGCTGAAAGGAGGTTATTGGAGCAACATGACAACCAGCATTAAGTTATCAGCTGACTTATTCTTTCAACTGGAACTCGGAGAGGCAATGAAAGAGGTTGAAATAATTGATGCTGTAGATATTTTAGTTAATTGGATTTATCGATTGCCTTCTTAGTTCTAAATTATGTTAAAATTACAGAAGGTAGGGATATACTATGGTCTGGAGCTTCTCCGATCATTATATTAGAATCTGGCATCAGTGATAGAATGTTTAGGACACCCCCGAGCATCGGGTATGTACTTAAGGAGATGTTGTGAAATTTAGTTAGTTAGCCTGACAGAAGCATGTGTATCATTGTATAAAAC]
[-] EMBL CA761652 [TTGATTAGGTGAAGGACGAGACAAGGGGGATACACCGTAAATCAAAAAATTTCAAAGATGAGCTTGTTTTGACACTGAAGGATATTGAGTCTTTATTTCCTGTGGCAACACTTGATCAGCCTTCAGAACAGGAGAATAAGAATTACGGTGGGGCCGGTGGGCATATGAGAAGTTTACCTCCATCTGCTGCAGCTGGCTTAGCTGCTGAAAGGAGGTTATTGGAGCAACATGACAACCAGCATTAAGTTATCAGCTGACTTATTCTTTCAACTGGAACTCGGAGAGGCAATGAAAGAGGTTGAAATAATTGATGCTGTAGATATTTTAGTTAATTGGATTTATCGATTGCCTTCTTAGTTCTAAATTATGTTAAAATTACAGAAGGTAGGGATATACTATGGTCTGGAGCTTCTCCGATCATTATATTAGAATCTGGCATCAGTGATAGAATGTTTAGGACACCCCCGAGCATCGGGTATGTACTTAAGGAGATGTTGTGAAATTTAGTTAGTTAGCCTGACAGAAGCATGTGTATCATTGTATAAAAC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8556#0 GATAAGATAGGCACAGACCTGCCTATATTGTCACAATTTTTCTACAGAGCATAAAAGTTG 60
consensus_8556#1 ------------------------------------------------------------
consensus_8556#0 GTGCAATGTGAATGCACGTGCAATCACTGACCAAACTACCAAACTCATGCTCCTTAGTAG 120
consensus_8556#1 ------------------------------------------------------------
consensus_8556#0 TTCTATCTTCAGGTTGGGTGCAATAACTGATTAATTTATTTTGGTGATTTATTGTAATTA 180
consensus_8556#1 ------------------------------------------------------------
consensus_8556#0 AGATTGAAGCTGTGACAAGAAGGATTTTGAGGATCACTTCAACTGACGGAGCAGCCAAAA 240
consensus_8556#1 ------------------------------------------------------------
consensus_8556#0 TACTTGTTTTTTCAAGCTGGAATGATGTTCTTGATGTGCTAGAGCACTCCCTTGCCGCTA 300
consensus_8556#1 ------------------------------------------------------------
consensus_8556#0 ACAATATCTCTTATGTTCGGATGAAAGGAGGAAGAAAATCGCAAACAGCGCTTGCCCAGT 360
consensus_8556#1 ------------------------------------------------------------
consensus_8556#0 TCAAAGGTCTGGCAAGTAGTATAAGTGGAGAGAAAGCAAAGAAGTCATTTTCCAAGATGC 420
consensus_8556#1 ------------------------------------------------------------
consensus_8556#0 AACCTGCTCAAGTATTGCTAATGCTTATCCAGCATGGTGCAAATGGTCTTAATCTTTTGG 480
consensus_8556#1 ------------------------------------------------------------
consensus_8556#0 AAGCACAACATGTAATATTAGTGGAGCCGTTGTTAAACCCTGCAGCTGAGGCGCAAGCTA 540
consensus_8556#1 ------------------------------------------------------------
consensus_8556#0 TCAGCAGGATCCATAGAGTTGGGCAAGACAAAAGCACGTTTATCCACCGTTTTATTGTGA 600
consensus_8556#1 ------------------------------------------------------------
consensus_8556#0 AGAATACTATTGAAGAGAGCATCTACAAATTAAACAGGGGCAGAGCTGTTTGCTCCACGA 660
consensus_8556#1 -----------------------------TTGATTAGGTGAAGGACGAGACAAGGGG-GA 30
** * *** * ** * **
consensus_8556#0 TACACCGTAAATCAAAAAATTTCAAAGATGAGCTTGTTTTGACACTGAAGGATATTGAGT 720
consensus_8556#1 TACACCGTAAATCAAAAAATTTCAAAGATGAGCTTGTTTTGACACTGAAGGATATTGAGT 90
************************************************************
consensus_8556#0 CTTTATTTCCTGTGGCAACACTTGATCAGCCTTCAGAACAGGAGAATAAGAATTACGGTG 780
consensus_8556#1 CTTTATTTCCTGTGGCAACACTTGATCAGCCTTCAGAACAGGAGAATAAGAATTACGGTG 150
************************************************************
consensus_8556#0 GGGCAGGTGGGCATATGAGAAGTTTACCTCCATCTGTTGCAGCTGGCTTAGCTGCTGAAA 840
consensus_8556#1 GGGCCGGTGGGCATATGAGAAGTTTACCTCCATCTGCTGCAGCTGGCTTAGCTGCTGAAA 210
**** ******************************* ***********************
consensus_8556#0 GGAGGTTATTGGAGCAACATGACAACCAGCATTAAGTTATCAGCTGACTTATTCTTTCAA 900
consensus_8556#1 GGAGGTTATTGGAGCAACATGACAACCAGCATTAAGTTATCAGCTGACTTATTCTTTCAA 270
************************************************************
consensus_8556#0 CTGGAACTCGGAGAGGCAATGAAAGAGGTTGAAATAATTGATGCTGTAGATATTTTAGTT 960
consensus_8556#1 CTGGAACTCGGAGAGGCAATGAAAGAGGTTGAAATAATTGATGCTGTAGATATTTTAGTT 330
************************************************************
consensus_8556#0 AATTGGATTTATCGATTGCCTTCTTAGTTCTAAATTATGTTAAAATTACAGAAGGTAGGG 1020
consensus_8556#1 AATTGGATTTATCGATTGCCTTCTTAGTTCTAAATTATGTTAAAATTACAGAAGGTAGGG 390
************************************************************
consensus_8556#0 ATATACTATGGTCTGGAGCTTCTCGGATCATTATATTAGAATCTGGCATCAGTGATAGAA 1080
consensus_8556#1 ATATACTATGGTCTGGAGCTTCTCCGATCATTATATTAGAATCTGGCATCAGTGATAGAA 450
************************ ***********************************
consensus_8556#0 TGTTTAGGACACCCCCGAGCATCGGGTATGTACTTAAGGAGATGTTGTGAAATTTAGTTA 1140
consensus_8556#1 TGTTTAGGACACCCCCGAGCATCGGGTATGTACTTAAGGAGATGTTGTGAAATTTAGTTA 510
************************************************************
consensus_8556#0 GTTAGCCTGACAGAAGCATGTGTATCATTGTATAAAAC 1178
consensus_8556#1 GTTAGCCTGACAGAAGCATGTGTATCATTGTATAAAAC 548
**************************************
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||