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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_856#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1173 fasta sequence
[ACACTCGCAGGCCGCCGCCTCCTCCTGCAGCGATCCGCGGCGGCGGCGGGGGGGAGGTGGCGGCTGCTGGGGACGGCGGCGGAGGCGTCCTCCTCTCCGGGAGGGAGGGAAGAGGCGGGCGGGGGAGGGGGAGATGAGATCTACCTGAAGAAGCCGGCGGCGGCGGCGGTGGTAACGACGCGGGACGAGACGTCGGTGGCGATGCCGATGTCGTTCATGACGGGGTCGGTGGTGGGGAAGCGGTTCTACCGGGAGGCCACCGTGCGGCGCGCCGACGACGGCAACGGGTGGTCGGTGATGCTCGACTACCGCACCCTCAAGTCGCCGGCGAAGCGGCCGCTCAAGCTGCAGTCGCGGACGCTCGCCATGGCCATCGCCGCCGAGTGGGAGTACCAGGAAGCAGATGGAATCCGGCCTTTTACAATGCCTCTTATGAAGCTTGCTTGCACTGCACTGGAACGAGTTCCATTGACACGAAAAAAAATAATTGATAATTTGATGAAGAAATTCCACCAAGATTTGGTATTCTGCCGTTCACCTGATGATAATGAGCTGACTGTAGGAGTTTATCAAAGACAGAAGGAGAAAATTGACCCTATACTAGACTGGGTAAACACTGAGTTTGGCTTCAAGCCTGTTGTATACACAAGCTTTTTTGGTGGAAAGCAAGATGAAGGGTTAGCTAATGCTGTAGAAACTGTTTTGAAGAATACCACCGACTTTGAGTTGGCATCTATTGATGCTATGGCAGCAGCAGCCCATTCCCTGGTAATCCCTCTCGCAATATTCAGAGGGAAGCTGGGAATTGAGCAGGCAATTGAATTGATCAGACTTGAAGAAGATCACCAGGTTGATAGATGGGGCTTGGTTGAAGGAGGTCATGATGTTGATATTGCCGATCTCAAAGTGCAAATGTCATCAGCTGTTGTGTTTCTTTTACTTTCATGGCAACTATAGTTACTTATGTAGCGAATCTACGGATCGGTTGGTTTTTTTTTGTTTGATCTCGACTTTCGAGCTTGTATCAACTTTTGTGACGACTGGTAGAATAAGACTTCCCTGCAGATGGTTAATAGGGAGACAGAGCTCCAGAATTTAATCTGTTGGATTCTGGTGTCTCAAACAGTATGTTTGTTAAGATATAAAAACTCAACCTGTGGAATACTTATCATT]
[+] EMBL AK064653 [ACACTCGCAGGCCGCCGCCTCCTCCTGCAGCGATCCGCGGCGGCGGCGGGGGGGAGGTGGCGGCTGCTGGGGACGGCGGCGGAGGCGTCCTCCTCTCCGGGAGGGAGGGAAGAGGCGGGCGGGGGAGGGGGAGATGAGATCTACCTGAAGAAGCCGGCGGCGGCGGCGGTGGTAACGACGCGGGACGAGACGTCGGTGGCGATGCCGATGTCGTTCATGACGGGGTCGGTGGTGGGGAAGCGGTTCTACCGGGAGGCCACCGTGCGGCGCGCCGACGACGGCAACGGGTGGTCGGTGATGCTCGACTACCGCACCCTCAAGTCGCCGGCGAAGCGGCCGCTCAAGCTGCAGTCGCGGACGCTCGCCATGGCCATCGCCGCCGAGTGGGAGTACCAGGAAGCAGATGGAATCCGGCCTTTTACAATGCCTCTTATGAAGCTTGCTTGCACTGCACTGGAACGAGTTCCATTGACACGAAAAAAAATAATTGATAATTTGATGAAGAAATTCCACCAAGATTTGGTATTCTGCCGTTCACCTGATGATAATGAGCTGACTGTAGGAGTTTATCAAAGACAGAAGGAGAAAATTGACCCTATACTAGACTGGGTAAACACTGAGTTTGGCTTCAAGCCTGTTGTATACACAAGCTTTTTTGGTGGAAAGCAAGATGAAGGGTTAGCTAATGCTGTAGAAACTGTTTTGAAGAATACCACCGACTTTGAGTTGGCATCTATTGATGCTATGGCAGCAGCAGCCCATTCCCTGGTAATCCCTCTCGCAATATTCAGAGGGAAGCTGGGAATTGAGCAGGCAATTGAATTGATCAGACTTGAAGAAGATCACCAGGTTGATAGATGGGGCTTGGTTGAAGGAGGTCATGATGTTGATATTGCCGATCTCAAAGTGCAAATGTCATCAGCTGTTGTGTTTCTTTTACTTTCATGGCAACTATAGTTACTTATGTAGCGAATCTACGGATCGGTTGGTTTTTTTTTGTTTGATCTCGACTTTCGAGCTTGTATCAACTTTTGTGACGACTGGTAGAATAAGACTTCCCTGCAGATGGTTAATAGGGAGACAGAGCTCCAGAATTTAATCTGTTGGATTCTGGTGTCTCAAACAGTATGTTTGTTAAGATATAAAAACTCAACCTGTGGAATACTTATCATT]
consensusID : consensus_856#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 393 fasta sequence
[TCTGCCGTTCACCTGATGATAATGAGCTGACTGTAGTAGTTTATCAAAGACAGAAGGAGAAAATTGACCCTATACTAGACTGGGTAAACACTGANTTTGGCTTCGGNGCCTGTNGTATACACAAGCTTTTTTGGTGGAAAGCAAGATGAAGGGTTAGCTAATGCTGTANAAACTGTTTTGAANAATACCACCGACTTTGAGTTGGCATCTATTGATGCTATGGCAGCAGCAGCCCANTCCCTGGTAATCCCTCTCNCNATATTCNNANGGAAGCTGGGAATTGAACNNGCATTGATGATCNGACTGAAAATCCCACGTGATANATGGCTGTGAGAGTCTGATGTATATGCCGATCTCAAGTGCAATGTCTCAGCTGTTGTGTTCTTTACTTCA]
[+] EMBL AA751686 [TCTGCCGTTCACCTGATGATAATGAGCTGACTGTAGTAGTTTATCAAAGACAGAAGGAGAAAATTGACCCTATACTAGACTGGGTAAACACTGANTTTGGCTTCGGNGCCTGTNGTATACACAAGCTTTTTTGGTGGAAAGCAAGATGAAGGGTTAGCTAATGCTGTANAAACTGTTTTGAANAATACCACCGACTTTGAGTTGGCATCTATTGATGCTATGGCAGCAGCAGCCCANTCCCTGGTAATCCCTCTCNCNATATTCNNANGGAAGCTGGGAATTGAACNNGCATTGATGATCNGACTGAAAATCCCACGTGATANATGGCTGTGAGAGTCTGATGTATATGCCGATCTCAAGTGCAATGTCTCAGCTGTTGTGTTCTTTACTTCA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_856#0 ACACTCGCAGGCCGCCGCCTCCTCCTGCAGCGATCCGCGGCGGCGGCGGGGGGGAGGTGG 60
consensus_856#1 ------------------------------------------------------------
consensus_856#0 CGGCTGCTGGGGACGGCGGCGGAGGCGTCCTCCTCTCCGGGAGGGAGGGAAGAGGCGGGC 120
consensus_856#1 ------------------------------------------------------------
consensus_856#0 GGGGGAGGGGGAGATGAGATCTACCTGAAGAAGCCGGCGGCGGCGGCGGTGGTAACGACG 180
consensus_856#1 ------------------------------------------------------------
consensus_856#0 CGGGACGAGACGTCGGTGGCGATGCCGATGTCGTTCATGACGGGGTCGGTGGTGGGGAAG 240
consensus_856#1 ------------------------------------------------------------
consensus_856#0 CGGTTCTACCGGGAGGCCACCGTGCGGCGCGCCGACGACGGCAACGGGTGGTCGGTGATG 300
consensus_856#1 ------------------------------------------------------------
consensus_856#0 CTCGACTACCGCACCCTCAAGTCGCCGGCGAAGCGGCCGCTCAAGCTGCAGTCGCGGACG 360
consensus_856#1 ------------------------------------------------------------
consensus_856#0 CTCGCCATGGCCATCGCCGCCGAGTGGGAGTACCAGGAAGCAGATGGAATCCGGCCTTTT 420
consensus_856#1 ------------------------------------------------------------
consensus_856#0 ACAATGCCTCTTATGAAGCTTGCTTGCACTGCACTGGAACGAGTTCCATTGACACGAAAA 480
consensus_856#1 ------------------------------------------------------------
consensus_856#0 AAAATAATTGATAATTTGATGAAGAAATTCCACCAAGATTTGGTATTCTGCCGTTCACCT 540
consensus_856#1 ----------------------------------------------TCTGCCGTTCACCT 14
**************
consensus_856#0 GATGATAATGAGCTGACTGTAGGAGTTTATCAAAGACAGAAGGAGAAAATTGACCCTATA 600
consensus_856#1 GATGATAATGAGCTGACTGTAGTAGTTTATCAAAGACAGAAGGAGAAAATTGACCCTATA 74
********************** *************************************
consensus_856#0 CTAGACTGGGTAAACACTGAGTTTGGCTTCA-AGCCTGTTGTATACACAAGCTTTTTTGG 659
consensus_856#1 CTAGACTGGGTAAACACTGANTTTGGCTTCGGNGCCTGTNGTATACACAAGCTTTTTTGG 134
******************** ********* ****** ********************
consensus_856#0 TGGAAAGCAAGATGAAGGGTTAGCTAATGCTGTAGAAACTGTTTTGAAGAATACCACCGA 719
consensus_856#1 TGGAAAGCAAGATGAAGGGTTAGCTAATGCTGTANAAACTGTTTTGAANAATACCACCGA 194
********************************** ************* ***********
consensus_856#0 CTTTGAGTTGGCATCTATTGATGCTATGGCAGCAGCAGCCCATTCCCTGGTAATCCCTCT 779
consensus_856#1 CTTTGAGTTGGCATCTATTGATGCTATGGCAGCAGCAGCCCANTCCCTGGTAATCCCTCT 254
****************************************** *****************
consensus_856#0 CGCAATATTCAGAGGGAAGCTGGGAATTGAGCAGGCAATTGAATTGATCAGACTTGAAGA 839
consensus_856#1 CNCNATATTCNNANGGAAGCTGGGAATTGAACNNGCA-TTGA--TGATCNGACT----GA 307
* * ****** * **************** * *** **** ***** **** **
consensus_856#0 AGATCACCAGGTTGATAGATGGGGCTTGGTTGAAGGAGGTCATGATGTTGATATTGCCGA 899
consensus_856#1 AAATC-CCACGT-GATANATGG-------CTGTGAGAGTC--TGATGT--ATAT-GCCGA 353
* *** *** ** **** **** ** *** ****** **** *****
consensus_856#0 TCTCAAAGTGCAAATGTCATCAGCTGTTGTGTTTCTTTTACTTTCATGGCAACTATAGTT 959
consensus_856#1 TCTCAA-GTGCAA-TGTC-TCAGCTGTTGTGTTC--TTTACTTCA--------------- 393
****** ****** **** ************** *******
consensus_856#0 ACTTATGTAGCGAATCTACGGATCGGTTGGTTTTTTTTTGTTTGATCTCGACTTTCGAGC 1019
consensus_856#1 ------------------------------------------------------------
consensus_856#0 TTGTATCAACTTTTGTGACGACTGGTAGAATAAGACTTCCCTGCAGATGGTTAATAGGGA 1079
consensus_856#1 ------------------------------------------------------------
consensus_856#0 GACAGAGCTCCAGAATTTAATCTGTTGGATTCTGGTGTCTCAAACAGTATGTTTGTTAAG 1139
consensus_856#1 ------------------------------------------------------------
consensus_856#0 ATATAAAAACTCAACCTGTGGAATACTTATCATT 1173
consensus_856#1 ----------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||