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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8560#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1211 fasta sequence
[AGAAAGGGAAGAGAGTGGGTGAGACCGTGAGAGAGGGGGATGGAGATGGAGGCGTCCGCCGCCGAGGGCGGAGCCGCGGCGGCGGCGCGGACGCTGCGGTGGGCGGGGCGCGCGGGGCACCTCGGGGGATTCCCGCGCGCCGCGGTGATCGCCGCCGTCGGGGCGGTCGCCAAGGCGTACGCGTCGCTGCTCAACACCACCACCGTCCACAACGCCGATGCCCTCCTCCGCCTCGTCTCCTCGCGGCCCCCCGGCACGCCGCTCCTCACCGTCAGCAACCACATGTCAACGATGGATGACCCACTTATGTGGGGATTCAAGGGTTTTCCAACTACAGATGCCAAACTTCAAAGATGGGTGTTGACAGCAGAGGACATCTGCTTCAGGAATGTGTTCATGTCTTACATATTTCGACTTGGGAAATGTGTGCCGATCACACGAGGTGCTGGAATTTATCAGGATCATATGACTGAAGCCCTTGAAGTGCTTAGCACTGGAGACTGGGAAAAATAGCTCAAGATGATCAGCCAATCAGACGTCTGAAGTGGGGAACTGCCAATCTTATCGTCCGAGCACCAGTAACTCCAATTGTTTTGCCTATTGTGCATTCTGGCTTTGAAAAGGTCATGCCAGAGAAATCATTTTTTGGGCGTCGACCGCCAGTGCCTCTTTGGAACAAGGAGATACATATCATCGTTGGAGAGCCAGTGGAGTTTGATCTGCCAAGCTTGAAGCAGGCAGCAAGAACAGTACCTCAGGATTCATCTTTTGAAAGGAAGGGTTGGCCAAGCATCATGCCAGACGGACTAGATGAAGCGGCTCAGAGATGGCTTTACCAGAAGATATCAGATAAGATCCAATCAGTTATGGAGACATTGCGGAAGAGACTTCTCGACCTGAAGCAACATTGATATTTGGCTGTTTACTTGCAATCCAAGGAGGCACCTCCTTTTTTTGAACAATACCTTCTTGAAATGGTAGAATATATAGCTTCATTGAACAGTTTCAGATGATGCAAAGACGATTGAGAGTAGGCAGTGGACGCTACGTCTGTTGGGGTGAAAATTTGAGACGACGGTGAGAGATAGAACTCAGCATGTTAGATTACGAGGCATTTCTTTTTCAGTAGGTCAAGAATATTTGTCAAGCGCCTACTTTTCTTTTTATTGTTTGGAATGGTTTGCCATGTTTACGAGGCATGAATAAAGTCA]
[+] EMBL AK069874 [AGAAAGGGAAGAGAGTGGGTGAGACCGTGAGAGAGGGGGATGGAGATGGAGGCGTCCGCCGCCGAGGGCGGAGCCGCGGCGGCGGCGCGGACGCTGCGGTGGGCGGGGCGCGCGGGGCACCTCGGGGGATTCCCGCGCGCCGCGGTGATCGCCGCCGTCGGGGCGGTCGCCAAGGCGTACGCGTCGCTGCTCAACACCACCACCGTCCACAACGCCGATGCCCTCCTCCGCCTCGTCTCCTCGCGGCCCCCCGGCACGCCGCTCCTCACCGTCAGCAACCACATGTCAACGATGGATGACCCACTTATGTGGGGATTCAAGGGTTTTCCAACTACAGATGCCAAACTTCAAAGATGGGTGTTGACAGCAGAGGACATCTGCTTCAGGAATGTGTTCATGTCTTACATATTTCGACTTGGGAAATGTGTGCCGATCACACGAGGTGCTGGAATTTATCAGGATCATATGACTGAAGCCCTTGAAGTGCTTAGCACTGGAGACTGGGAAAAATAGCTCAAGATGATCAGCCAATCAGACGTCTGAAGTGGGGAACTGCCAATCTTATCGTCCGAGCACCAGTAACTCCAATTGTTTTGCCTATTGTGCATTCTGGCTTTGAAAAGGTCATGCCAGAGAAATCATTTTTTGGGCGTCGACCGCCAGTGCCTCTTTGGAACAAGGAGATACATATCATCGTTGGAGAGCCAGTGGAGTTTGATCTGCCAAGCTTGAAGCAGGCAGCAAGAACAGTACCTCAGGATTCATCTTTTGAAAGGAAGGGTTGGCCAAGCATCATGCCAGACGGACTAGATGAAGCGGCTCAGAGATGGCTTTACCAGAAGATATCAGATAAGATCCAATCAGTTATGGAGACATTGCGGAAGAGACTTCTCGACCTGAAGCAACATTGATATTTGGCTGTTTACTTGCAATCCAAGGAGGCACCTCCTTTTTTTGAACAATACCTTCTTGAAATGGTAGAATATATAGCTTCATTGAACAGTTTCAGATGATGCAAAGACGATTGAGAGTAGGCAGTGGACGCTACATCTGTTGAGGTGAAAATTTGAGACGACGGTGAGAGATAGAACTCAGCATGTTAGATTACGAGGCATTTCTTTTTCAGTAGGTCAAGAATATTTGTCAAGCGCCTACTTTTCTTTTTATTGTTTGGAATGGTTTGCCATGTTTACGAGGCATGAATAAAGTCA]
[-] EMBL BI305706 [ AGTAGGCTGTGGACGCTACGTCTGTTGGGGTGAAAATTTGAGACGACGGTGAGAGATAGAACTCAGCATGTTAGATTACGAGGCATTTCTTTTTCAGTAGGTCAAGAATATTTGTCAAGCGCCTACTaaa ]
[-] EMBL CB965185 [ TGGACGCTACGTCTGTTGGGGTGAAAATTTGAGACGACGGTGAGAGATAGAACTCAGCATGTTAGATTACGAGGCATTTCTTTTTCAGTAGGTCAAGAATA TTGTCAg ]
consensusID : consensus_8560#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 842 fasta sequence
[ACACCACCACCGTCCACAACGCTGATGCCCTCCTCCGCCTCGTCTCCTCGCGGCCCCCCGGCACGCCGCTCCTCACCGTCAGCAACCACATGTCAACGATGGATGACCCACTTATGTGGGGATGCAAGGGTTTTCCAACTACAGATGCCAAACTTCAAAGATGGGTGTTGACAGCAGAGGACATCTGCTTCAGGAATGTGTCCATGTCTTACATATCCTCGACTGGGGAAATGTGTGCCGATCACACGAGGTGCTGGAATGAATCAGGATCATATGACTGAAGCCCTGGAAGTGCTTAGCACTGGAGACTGGGAAAAATACCTCAGGATGATCAGCCAATCAGACGTCTGAAGTGGGGAACTGCCATTCTTATCGTCCGAGCACCATTAACTCCATTGGTTTTGCCTATGGTGCATCCTGGCTTCAAAAAGGTCTTGCCAGAGAAATCCTTTTTTGGGGCTTTAACCCCCAAGTTCATCTTTTGGAACCGGGGAGATTCTTTTTTATCGTGGGACAACCCGTTGGATTTTGATCCTGCCATCCATAAACCGGCCTCCATACACTATACCTTGGGATCGTTCTTTTTAAAGGAATGGTTGGCCCACCTTTCGTGCGCAACTGCAAAAATTTACTAGGCAAAATGTGCTTGACTAAATAGTTCTGATGCATCCAATGCGTTTGGAGAAGTCCCGAACGATTGTCGACTCTCCTANCTTGTATTCGTATATCCCCACCTACTAGACAGCACCTAGTGTGAACGCTCTTTCAAACCGTAGTTTCCGCCGTNAGCACCCGACGCGACACTAGCACCCCACGCACACTTGCAGCATCCCGCTCAGAGC]
[+] EMBL CA753372 [ACACCACCACCGTCCACAACGCTGATGCCCTCCTCCGCCTCGTCTCCTCGCGGCCCCCCGGCACGCCGCTCCTCACCGTCAGCAACCACATGTCAACGATGGATGACCCACTTATGTGGGGATGCAAGGGTTTTCCAACTACAGATGCCAAACTTCAAAGATGGGTGTTGACAGCAGAGGACATCTGCTTCAGGAATGTGTCCATGTCTTACATATCCTCGACTGGGGAAATGTGTGCCGATCACACGAGGTGCTGGAATGAATCAGGATCATATGACTGAAGCCCTGGAAGTGCTTAGCACTGGAGACTGGGAAAAATACCTCAGGATGATCAGCCAATCAGACGTCTGAAGTGGGGAACTGCCATTCTTATCGTCCGAGCACCATTAACTCCATTGGTTTTGCCTATGGTGCATCCTGGCTTCAAAAAGGTCTTGCCAGAGAAATCCTTTTTTGGGGCTTTAACCCCCAAGTTCATCTTTTGGAACCGGGGAGATTCTTTTTTATCGTGGGACAACCCGTTGGATTTTGATCCTGCCATCCATAAACCGGCCTCCATACACTATACCTTGGGATCGTTCTTTTTAAAGGAATGGTTGGCCCACCTTTCGTGCGCAACTGCAAAAATTTACTAGGCAAAATGTGCTTGACTAAATAGTTCTGATGCATCCAATGCGTTTGGAGAAGTCCCGAACGATTGTCGACTCTCCTANCTTGTATTCGTATATCCCCACCTACTAGACAGCACCTAGTGTGAACGCTCTTTCAAACCGTAGTTTCCGCCGTNAGCACCCGACGCGACACTAGCACCCCACGCACACTTGCAGCATCCCGCTCAGAGC]
consensusID : consensus_8560#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 429 fasta sequence
[TATTCAGATAAGATCCAATCAGGTTATGGAGNCATTGCGGAAAGAGACTTCTCGACCCTGAAGCCANCCATTGATATTTTGGCTGTTTNCTTGCAATCCCAAGGAGGGCNCCTCCTTTTTTTTGAANCAAATCCCTTCTTTGAAATGGTAGAATATATAGCTTTCATTGANCAGGTTTCAGATGATGCAAAAGCCGATTGAGAGGTAGGCAGTGGGCCGCTACATCTGTTGAGGGTGAAAAATTTGAGACGACGGGTGAGAGATAGAACTCAGCATGTTTAGATTACGAGGCATTTCTTTTTTCAGTAGGCCAAGAATATTTTGTCAAGCGCCTACTTTTCTTTTTATTGTTGGAATGGTTTGCCATGTTTACGAGGCATGAATAAAGTCATCGCCTATTCAACTTGTTAGATGTTCTAAAAAAAAAAA]
[+] EMBL AU166963 [TATTCAGATAAGATCCAATCAGGTTATGGAGNCATTGCGGAAAGAGACTTCTCGACCCTGAAGCCANCCATTGATATTTTGGCTGTTTNCTTGCAATCCCAAGGAGGGCNCCTCCTTTTTTTTGAANCAAATCCCTTCTTTGAAATGGTAGAATATATAGCTTTCATTGANCAGGTTTCAGATGATGCAAAAGCCGATTGAGAGGTAGGCAGTGGGCCGCTACATCTGTTGAGGGTGAAAAATTTGAGACGACGGGTGAGAGATAGAACTCAGCATGTTTAGATTACGAGGCATTTCTTTTTTCAGTAGGCCAAGAATATTTTGTCAAGCGCCTACTTTTCTTTTTATTGTTGGAATGGTTTGCCATGTTTACGAGGCATGAATAAAGTCATCGCCTATTCAACTTGTTAGATGTTCTAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8560#0 AGAAAGGGAAGAGAGTGGGTGAGACCGTGAGAGAGGGGGATGGAGATGGAGGCGTCCGCC 60
consensus_8560#2 ------------------------------------------------------------
consensus_8560#1 ------------------------------------------------------------
consensus_8560#0 GCCGAGGGCGGAGCCGCGGCGGCGGCGCGGACGCTGCGGTGGGCGGGGCGCGCGGGGCAC 120
consensus_8560#2 ------------------------------------------------------------
consensus_8560#1 ------------------------------------------------------------
consensus_8560#0 CTCGGGGGATTCCCGCGCGCCGCGGTGATCGCCGCCGTCGGGGCGGTCGCCAAGGCGTAC 180
consensus_8560#2 ------------------------------------------------------------
consensus_8560#1 ------------------------------------------------------------
consensus_8560#0 GCGTCGCTGCTCAACACCACCACCGTCCACAACGCCGATGCCCTCCTCCGCCTCGTCTCC 240
consensus_8560#2 ------------------------------------------------------------
consensus_8560#1 ------------------------------------------------------------
consensus_8560#0 TCGCGGCCCCCCGGCACGCCGCTCCTCACCGTCAGCAACCACATGTCAACGATGGATGAC 300
consensus_8560#2 ------------------------------------------------------------
consensus_8560#1 ------------------------------------------------------------
consensus_8560#0 CCACTTATGTGGGGATTCAAGGGTTTTCCAACTACAGATGCCAAACTTCAAAGATGGGTG 360
consensus_8560#2 ------------------------------------------------------------
consensus_8560#1 ------------------------------------------------------------
consensus_8560#0 TTGACAGCAGAGGACATCTGCTTCAGGAATGTGTTCATGTCTTACATATTTCGACTTGGG 420
consensus_8560#2 ------------------------------------------------------------
consensus_8560#1 ------------------------------------------------------------
consensus_8560#0 AAATGTGTGCCGATCACACGAGGTGCTGGAATTTATCAGGATCATATGACTGAAGCCCTT 480
consensus_8560#2 ------------------------------------------------------------
consensus_8560#1 ------------------------------------------------------------
consensus_8560#0 GAAGTGCTTAGCACTGGAGACTGGGAAAAATAGCTCAAGATGATCAGCCAATCAGACGTC 540
consensus_8560#2 ------------------------------------------------------------
consensus_8560#1 ------------------------------------------------------------
consensus_8560#0 TGAAGTGGGGAACTGCCAATCTTATCGTCCGAGCACCAGTAACTCCAATTGTTTTGCCTA 600
consensus_8560#2 ------------------------------------------------------------
consensus_8560#1 ------------------------------------------------------------
consensus_8560#0 TTGTGCATTCTGGCTTTGAAAAGGTCATGCCAGAGAAATCATTTTTTGGGCGTCGACCGC 660
consensus_8560#2 ------------------------------------------------------------
consensus_8560#1 -----ACACCACCACCGTCCACAACGCTGATGCCCTCCTCCGCCTCGTCTCCTCGCGGCC 55
consensus_8560#0 CAGTGCCTCTTTGGAACAAGGAGATACATATCATCGTTGGAGAGCCAGTGGAGTTTGATC 720
consensus_8560#2 ------------------------------------------------------------
consensus_8560#1 CCCCGGCACGCCGCTCCTCACCGTCAGCAACCACATGTCAACGATGGATGACCCACTTAT 115
consensus_8560#0 TGCCAAGCTTGAAGCAGGCAGCAAGAACAGTACCTCAGGATTCATCTTTTGAAAGGAAGG 780
consensus_8560#2 ------------------------------------------------------------
consensus_8560#1 GTGGGGATGCAAGGGTTTTCCAACTACAGATGCCAAACTTCAAAGATGGGTGTTGACAGC 175
consensus_8560#0 GTTGGCCAAGCATCATGCCAGACGGACTAGATGAAGCGGCTCAGAGATGGCTTTACCAGA 840
consensus_8560#2 ------------------------------------------------------------
consensus_8560#1 AGAGGACATCTGCTTCAGGAATGTGTCCATGTCTTACATATCCTCGACTGGGGAAATGTG 235
consensus_8560#0 AGATAT-CAGATAAGATCC--AATCAG-TTATGGAGACATTGCGGAA-----GAGACTTC 891
consensus_8560#2 ---TATTCAGATAAGATCC--AATCAGGTTATGGAGNCATTGCGGAAA----GAGACTTC 51
consensus_8560#1 TGCCGATCACACGAGGTGCTGGAATGAATCAGGATCATATGACTGAAGCCCTGGAAGTGC 295
** * ** * * * * * * ** * *** * * * *
consensus_8560#0 TCGACC-TGAAGCAAC--ATTGATATTT-GG------CTGTTTACTTGCAATCC--AAGG 939
consensus_8560#2 TCGACCCTGAAGCCANCCATTGATATTTTGG------CTGTTTNCTTGCAATCCCAAGGA 105
consensus_8560#1 TTAGCACTGGAGACTGGGAAAAATACCTCAGGATGATCAGCCAATCAGACGTCTGAAGTG 355
* * ** ** * *** * * * * * ** *
consensus_8560#0 AGGCACCTCCTTTTTTT-GAAC--AATACC------TTCTT-GAAATGGTAGAATATATA 989
consensus_8560#2 GGGCNCCTCCTTTTTTTTGAANCAAATCCC------TTCTTTGAAATGGTAGAATATATA 159
consensus_8560#1 GGGAACTGCCATTCTTATCGTCCGAGCACCATTAACTCCATTGGTTTTGCCTATGGTGCA 415
** * ** ** ** * ** * * * * * * * * *
consensus_8560#0 GCTT-CATTGAACAG-TTTCAGATGATGCAAAGAC-GATTGAGAG-TAGGCAGTGGAC-G 1044
consensus_8560#2 GCTTTCATTGANCAGGTTTCAGATGATGCAAAAGCCGATTGAGAGGTAGGCAGTGGGCCG 219
consensus_8560#1 TCCTGGCTTCAAAAAGGTCTTGCCAGAGAAATCCTTTTTTGGGGCTTTAACCCCCAAGTT 475
* * ** * * * * * ** *** * * *
consensus_8560#0 CTACGTCTGTTG-GGGTGAAAA-TTT---------GAGACGACGG-TGAGAGATAGAACT 1092
consensus_8560#2 CTACATCTGTTGAGGGTGAAAAATTT---------GAGACGACGGGTGAGAGATAGAACT 270
consensus_8560#1 CATCTTTTGGAACCGGGGAGATTCTTTTTTATCGTGGGACAACCCGTTGGATTTTGATCC 535
* * * ** ** ** * ** * *** ** * ** * ** *
consensus_8560#0 CAGCATGTT-AGATTACGAGGCATTTCTTTTT-CAGTAGGTCAAGAATATTT-GTCAAGC 1149
consensus_8560#2 CAGCATGTTTAGATTACGAGGCATTTCTTTTTTCAGTAGGCCAAGAATATTTTGTCAAGC 330
consensus_8560#1 TGCCATCCATAAACCGGCCTCCATACACTATA-CCTTGGGATCGTTCTTTTTAAAGGAAT 594
*** * * *** * * * * ** * *** *
consensus_8560#0 GCCTACTTTTCTTTTTAT---TGTTTGGAATGGTTTGCCATGTTTACGAGGCATGAATAA 1206
consensus_8560#2 GCCTACTTTTCTTTTTAT---TGTT-GGAATGGTTTGCCATGTTTACGAGGCATGAATAA 386
consensus_8560#1 GGTTGGCCCACCTTTCGTGCGCAACTGCAAAAATTTACTAGGCAAAATGTGCTTGACTAA 654
* * * *** * * ** *** * * * * ** *** ***
consensus_8560#0 A--GTCA----------------------------------------------------- 1211
consensus_8560#2 A--GTCATCGCCTATTCAACTTGTT---AGATGTTCTAAAAAAAAAAA------------ 429
consensus_8560#1 ATAGTTCTGATGCATCCAATGCGTTTGGAGAAGTCCCGAACGATTGTCGACTCTCCTANC 714
* **
consensus_8560#0 ------------------------------------------------------------
consensus_8560#2 ------------------------------------------------------------
consensus_8560#1 TTGTATTCGTATATCCCCACCTACTAGACAGCACCTAGTGTGAACGCTCTTTCAAACCGT 774
consensus_8560#0 ------------------------------------------------------------
consensus_8560#2 ------------------------------------------------------------
consensus_8560#1 AGTTTCCGCCGTNAGCACCCGACGCGACACTAGCACCCCACGCACACTTGCAGCATCCCG 834
consensus_8560#0 --------
consensus_8560#2 --------
consensus_8560#1 CTCAGAGC 842
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||