|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8562#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1039 fasta sequence
[GACGCGAGCGAGCCAGAGCAACGCAAGCAAGCAAGCAAGCAGCTAGCTAGCGCAGCGGCAATGGCGATCGTGGGCGAGGAGTACTGCTCCGCGGAGGAGCGGGTGCTCACGGTGCGCAAGACCTCCCACTTCTCCCCCGGCGACGGCTTCGCGGCCTACGACCACCGCACCGGCGGCCTCGCCTTCCGCGCCGACACCTACGGCCGCGGCCACGGAGGGGGAGCCGCCTCCGCCGGCGAGCTCGCGCTCCTCGGCCCCGCCGGAGAGGCGCTCATCACCGTGCGCCGCCGCCGCCCGTCCCTGCACCAACGCTGGGAGGGCTACCTCGGCGCCCGCGCCGACGGCCAGAAGCCTCTCTTCTCTGCTCGCCGCTCCTCCATCCTCGGCGGCGCCGCGGCCGGCGCTGTCGTCGAGCTCCTCGCCCCGCTCCCCGCCTCCTTCTCGTCTACCCACGCTGCTGCCGCCGAGCTCCTCCGCGTCGATGGCTCCTTCCCGCGGCGGTGCTGCCGCGTGGTGGCGCCCAAGGCCGAGTCAGGCGGGGAGGCGGCGGTGGTGGCAGAGATCAGGAGGAAGGTGGACGAGGGGGCGCGGGTGGTCATGGGCAGGGACGTGTTCGTCCTGCGGGTGGGCGCCGGGTTCGACGCGGCGTTCGCCATGGCGATCGTCCTCGTGCTCGATCAGATCGCCGGCGACGAGGCCGACGGCAACGCCGGAGAGGAAACCAACCGCGCCATGATTTGGTGATGGAACGAACCGTGCGCTTCTTGGTCTTTTTGTGTATAGCGCTGCGTTCTTGCTGATCGCAATTTTCCTCTTTTGTTTTGTTTGTGCGTGTTGGTGTGTACGCCTTTGCTCCGGAGAAAACGGCAATGTGCAATACGTGTTATGCAACTTATTTCGAAGTTTTTAGTTTGTATACATAGCA-ATCGCCAGAATGGCAGATGAATGTGTGGATTCTTGAAGCCTTTTTTTTTTTTTTGGAGTAATCACCGGAGGAGAGAGATTCTCCACCTAAATTTTCCATTGAAAGTGAGCAAAT]
[+] EMBL AK069298 [GACGCGAGCGAGCCAGAGCAACGCAAGCAAGCAAGCAAGCAGCTAGCTAGCGCAGCGGCAATGGCGATCGTGGGCGAGGAGTACTGCTCCGCGGAGGAGCGGGTGCTCACGGTGCGCAAGACCTCCCACTTCTCCCCCGGCGACGGCTTCGCGGCCTACGACCACCGCACCGGCGGCCTCGCCTTCCGCGCCGACACCTACGGCCGCGGCCACGGAGGGGGAGCCGCCTCCGCCGGCGAGCTCGCGCTCCTCGGCCCCGCCGGAGAGGCGCTCATCACCGTGCGCCGCCGCCGCCCGTCCCTGCACCAACGCTGGGAGGGCTACCTCGGCGCCCGCGCCGACGGCCAGAAGCCTCTCTTCTCTGCTCGCCGCTCCTCCATCCTCGGCGGCGCCGCGGCCGGCGCTGTCGTCGAGCTCCTCGCCCCGCTCCCCGCCTCCTTCTCGTCTACCCACGCTGCTGCCGCCGAGCTCCTCCGCGTCGATGGCTCCTTCCCGCGGCGGTGCTGCCGCGTGGTGGCGCCCAAGGCCGAGTCAGGCGGGGAGGCGGCGGTGGTGGCAGAGATCAGGAGGAAGGTGGACGAGGGGGCGCGGGTGGTCATGGGCAGGGACGTGTTCGTCCTGCGGGTGGGCGCCGGGTTCGACGCGGCGTTCGCCATGGCGATCGTCCTCGTGCTCGATCAGATCGCCGGCGACGAGGCCGACGGCAACGCCGGAGAGGAAACCAACCGCGCCATGATTTGGTGATGGAACGAACCGTGCGCTTCTTGGTCTTTTTGTGTATAGCGCTGCGTTCTTGCTGATCGCAATTTTCCTCTTTTGTTTTGTTTGTGCGTGTTGGTGTGTACGCCTTTGCTCCGGAGAAAACGGCAATGTGCAATACGTGTTATGCAACTTATTTCGAAGTTTTTAGTTTGTATACATAGCA ATCGCCAGAATGGCAGATGAATGTGTGGATTCTTGAAGCCTTTTTTTTTTTTTTGGAGTAATCACCGGAGGAGAGAGATTCTCCACCTAAATTTTCCATTGAAAGTGAGCAAAT]
[+] EMBL BI804158 [ gggcgcCCTTTTTTTTTTTTTTTGTGCGTGTTGGTGTGTACGCCTTTGCTCCGGAGAAAACGGCAAAGTGCAATACGTGTTATGCAACTTATTTCGAAGTTTTTAGTTTGTATACATAGCACATCGCCAGAATGGCAGATGAAaaaaaaaa ]
consensusID : consensus_8562#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 296 fasta sequence
[GAGGNAGTTCTGCTCCGCGGGGATGACCGGGTGCTCACGGGTGCGCAAGACCTCCCACTTCTCCCCCGGCGACGGCTTCGCNGCCTACGACCACCGCACCGGCGGCCTCGCCTTCCGCGCCGACACCTACGGCCGCGGCCACAGGAAGGGGAGCCGCCTCCGCCNGCNAAGCTCGCGCTCCTCTGCCCCNCCGGNAAANGCNCTCATCACCNTGCGCCGCCGCCGCCCNTCCCTGCTCCAACCCTGGGAANGGCTACCTCNGCGNCCGCCCCCGNATTGNTTTTTTTCCTCTCTTC]
[+] EMBL BE228515 [GAGGNAGTTCTGCTCCGCGGGGATGACCGGGTGCTCACGGGTGCGCAAGACCTCCCACTTCTCCCCCGGCGACGGCTTCGCNGCCTACGACCACCGCACCGGCGGCCTCGCCTTCCGCGCCGACACCTACGGCCGCGGCCACAGGAAGGGGAGCCGCCTCCGCCNGCNAAGCTCGCGCTCCTCTGCCCCNCCGGNAAANGCNCTCATCACCNTGCGCCGCCGCCGCCCNTCCCTGCTCCAACCCTGGGAANGGCTACCTCNGCGNCCGCCCCCGNATTGNTTTTTTTCCTCTCTTC]
consensusID : consensus_8562#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 290 fasta sequence
[GGCACGNGACNTCNCGANNACGNTANGATGCNACTCNTACNTCCNCANGCTAGCCNGCAAGCAGCTAGCTANCGCATCGGCAATNGCGATNGTGGGCGAAGNGTNCTGCTCCNCGGAGGAGCGGGTGCTCACGGTGCGCAAGACCTCNCACTTCTCCCCCGGCGACGGTTTCNCGGNCTNNGACNNNCGCANCGGCGGCCTCGCCTTCCGCGCCNANCCCTACTGCCGCNGNCTCCNNNGGGGAGCCNCCTCCTCCGGTGNGCTCCCNCTCCTCGNCTTTTTTNGNGNTN]
[+] EMBL AA753111 [GGCACGNGACNTCNCGANNACGNTANGATGCNACTCNTACNTCCNCANGCTAGCCNGCAAGCAGCTAGCTANCGCATCGGCAATNGCGATNGTGGGCGAAGNGTNCTGCTCCNCGGAGGAGCGGGTGCTCACGGTGCGCAAGACCTCNCACTTCTCCCCCGGCGACGGTTTCNCGGNCTNNGACNNNCGCANCGGCGGCCTCGCCTTCCGCGCCNANCCCTACTGCCGCNGNCTCCNNNGGGGAGCCNCCTCCTCCGGTGNGCTCCCNCTCCTCGNCTTTTTTNGNGNTN]
consensusID : consensus_8562#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 192 fasta sequence
[AGAGGACGAGACAAGGGGGGTCTTTTTGTGTATAGCGCTGCGTTCTTGCTGATCGCAATTTTCCTCTTTTGTTTTGTTTGTGCGTGTTGGTGTGTACGCCTTTGCTCCGGAGAAAACGGCAAAGTGCAATACGTGTTATGCAACTTATTTCGAAGTTTTTAGTTTGTATNCATAGCAAAAAAAAAAAAAAAA]
[-] EMBL CA760659 [AGAGGACGAGACAAGGGGGGTCTTTTTGTGTATAGCGCTGCGTTCTTGCTGATCGCAATTTTCCTCTTTTGTTTTGTTTGTGCGTGTTGGTGTGTACGCCTTTGCTCCGGAGAAAACGGCAAAGTGCAATACGTGTTATGCAACTTATTTCGAAGTTTTTAGTTTGTATNCATAGCAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8562#0 GACGCGAGCGAGCCAGAGCAACGCAAGCAAGCAAGCAAGCAGCTAGCTAGCGCAGCGGCA 60
consensus_8562#3 ------------------------------------------------------------
consensus_8562#1 ------------------------------------------------------------
consensus_8562#2 ------------------------------------------------------------
consensus_8562#0 ATGGCGATCGTGGGCGAGGAGTACTGCTCCGCGGAGGAGCGGGTGCTCACGGTGCGCAAG 120
consensus_8562#3 ------------------------------------------------------------
consensus_8562#1 ------------------------------------------------------------
consensus_8562#2 ------------------------------------------------------------
consensus_8562#0 ACCTCCCACTTCTCCCCCGGCGACGGCTTCGCGGCCTACGACCACCGCACCGGCGGCCTC 180
consensus_8562#3 ------------------------------------------------------------
consensus_8562#1 ------------------------------------------------------------
consensus_8562#2 ------------------------------------------------------------
consensus_8562#0 GCCTTCCGCGCCGACACCTACGGCCGCGGCCACGGAGGGGGAGCCGCCTCCGCCGGCGAG 240
consensus_8562#3 ------------------------------------------------------------
consensus_8562#1 ------------------------------------------------------------
consensus_8562#2 ------------------------------------------------------------
consensus_8562#0 CTCGCGCTCCTCGGCCCCGCCGGAGAGGCGCTCATCACCGTGCGCCGCCGCCGCCCGTCC 300
consensus_8562#3 ------------------------------------------------------------
consensus_8562#1 ------------------------------------------------------------
consensus_8562#2 ------------------------------------------------------------
consensus_8562#0 CTGCACCAACGCTGGGAGGGCTACCTCGGCGCCCGCGCCGACGGCCAGAAGCCTCTCTTC 360
consensus_8562#3 ------------------------------------------------------------
consensus_8562#1 ------------------------------------------------------------
consensus_8562#2 ------------------------------------------------------------
consensus_8562#0 TCTGCTCGCCGCTCCTCCATCCTCGGCGGCGCCGCGGCCGGCGCTGTCGTCGAGCTCCTC 420
consensus_8562#3 ------------------------------------------------------------
consensus_8562#1 ------------------------------------------------------------
consensus_8562#2 ------------------------------------------------------------
consensus_8562#0 GCCCCGCTCCCCGCCTCCTTCTCGTCTACCCACGCTGCTGCCGCCGAGCTCCTCCGCGTC 480
consensus_8562#3 ------------------------------------------------------------
consensus_8562#1 ------------------------------------------------------------
consensus_8562#2 ------------------------------------------------------------
consensus_8562#0 GATGGCTCCTTCCCGCGGCGGTGCTGCCGCGTGGTGGCGCCCAAGGCCGAGTCAGGCGGG 540
consensus_8562#3 ------------------------------------------------------------
consensus_8562#1 ------------------------------------------------------------
consensus_8562#2 ------------------------------------------------------------
consensus_8562#0 GAGGCGGCGGTGGTGGCAGAGATCAGGAGGAAGGTGGACGAGGGGGCGCGGGTGGTCATG 600
consensus_8562#3 ------------------------------------------------------------
consensus_8562#1 ------------------------------------------------------------
consensus_8562#2 ------------------------------------------------------------
consensus_8562#0 GGCAGGGACGTGTTCGTCCTGCGGGTGGGCGCCGGGTTCGACGCGGCGTTCGCCATGGCG 660
consensus_8562#3 ------------------------------------------------------------
consensus_8562#1 ------------------------------------------------------------
consensus_8562#2 ------------------------------------------------------------
consensus_8562#0 ATCGTCCTCGTGCTCGATCAGATCGCCGGCGACGAGGCCGACGGCAACGCCGGAGAGGAA 720
consensus_8562#3 ------------------------------------------------------------
consensus_8562#1 ------------------------------------------------------------
consensus_8562#2 ------------------------------------------------------------
consensus_8562#0 ACCAACCGCGCCATGATTTGGTGATGGAACGAACCGTGCGCTTCTTGGTCTT--TTTGTG 778
consensus_8562#3 -----------------------AGAGGACGAGACAAGGGG-----GGTCTT--TTTGTG 30
consensus_8562#1 -----------------GAGGNAGTTCTGCTCCGCGGGGATGACCGGGTGCTCACGGGTG 43
consensus_8562#2 --------------------GGCACGNGACNTCNCGANNACGNTANGATGCN-ACTCNTA 39
* * * * *
consensus_8562#0 TATAGCGCTGCGTTCTTGCTGATCGCAATTTTCCTCTTTTGTTTTGTTTGTGCGTGTTGG 838
consensus_8562#3 TATAGCGCTGCGTTCTTGCTGATCGCAATTTTCCTCTTTTGTTTTGTTTGTGCGTGTTGG 90
consensus_8562#1 CGCAAGACCTCCCACTTCTCCCCCGGCGACGGCTTCGCNGCCTACGACCACCGCACCGGC 103
consensus_8562#2 CNTCCNCANGCTAGCCNGCAAGCAGCTAGCTANCGCATCGGCAATNGCGATNGTGGGCGA 99
* * * * *
consensus_8562#0 TGTGTACGCCTTTGCTCCGGAGAAAACG---GCAATGTGCAATACGTGTTA-TGCAACTT 894
consensus_8562#3 TGTGTACGCCTTTGCTCCGGAGAAAACG---GCAAAGTGCAATACGTGTTA-TGCAACTT 146
consensus_8562#1 GGCCTCGCCTTCCGCGCCGACACCTACGGCCGCGGC-CACAGGAAGGGGAGCCGCCTCCG 162
consensus_8562#2 AGNGTNCTGCTCCNCGGAGGAGCGGGTGCTCACGGTGCGCAAGACCTCNCACT-TCTCCC 158
* * * * * * * ** * *
consensus_8562#0 ATTTCGAAGTTTTTAGTTTGTATACATAGCAATCGCCAGAATGGCAGATGAATGTGTGGA 954
consensus_8562#3 ATTTCGAAGTTTTTAGTTTGTATNCATAGCAAAAAAAAAAAAAAAA-------------- 192
consensus_8562#1 CCNGCNAAGCTCGCGCT-CCTCTGCCCCNCCGGNAAANGCNCTCATCACCNTGCGCCGCC 221
consensus_8562#2 CCGGCGACGGTTTCNCGGNCTNNGACNNNCGCANCGGCGGCCTCGCCTTCC-GCGCCNAN 217
* * * * * *
consensus_8562#0 TTCTTGAAGCCTTTTTTTTTTTTTTGGAGTAATCACCGGAGGAGAGAGATTCTCCACCTA 1014
consensus_8562#3 ------------------------------------------------------------
consensus_8562#1 GCCGCCCNTCCCTGCTCCAACCCTGGGAANGGCTACCTCNGCGNCCGCCCCCGNATTGNT 281
consensus_8562#2 CCCTACTGCCGCNGNCTCCNNNGGGGAGCCNCCTCCTCCGGTGNGCTCCCNCTCCTCGNC 277
consensus_8562#0 AATTTTCCATTGAAAGTGAGCAAAT 1039
consensus_8562#3 -------------------------
consensus_8562#1 TTTTTTCCTCTCTTC---------- 296
consensus_8562#2 TTTTTTNGNGNTN------------ 290
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||