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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8563#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1627 fasta sequence
[GTATATATATATGCAGCTGCTGCTCATCGCCAAATCGACGGCAACAACTAACGATTGATCGCCATCAAGTATAGCTATAGCTAGCTAGCTTGTGAATTCATCAATGGAGATGACGACGACGACGGAGAAGTGCATCAGCAGCAGCAGCAGCGTCCATGGCGGCAACAATCGTCGAGAAGAATACCCCAAGGAGGGAGCCGACGACGACGTCGAGGCAGGCGTCCTCGGCCGTGACGGCGAGGCTGCGGCGACGACGACGCGGCAGCGCCTCGTGTCGCTCGACGTCTTCAGGGGAATCACCGTCGCGCTTATGATCCTCGTGGATGATGTTGGTGGCATTGTCCCGGCGATCAGCCACTCTCCATGGGATGGCGTGACGCTAGCGGACTTTGTCTTCCCCTTCTTCCTCTTCATCGTTGGGGTCTCCTTAGCTTTTGCCTATAAGAAAGTGCCAGACAAAATGTTAGCAACCAAAAAGGCCATGCTTAGGGCTGTAAAACTCTTCATTGTGGGCCTTATATTGCAAGGTGGCTTCTTCCATGGCATCCATGAACTTACCTATGGTGTCGATATTCGCAAAATTCGGTTAATGGGTGTACTACAGAGGATTGCAATAGCCTACTTAGTGGTGGCGCTTTGCGAAATCTGGCTAAGGAGGGTTAGTAGTGGCGGTAACATTGGCTCTGGCTCTATGTTAATAACAAGATACCATCATCAGATGTTTGTGGGTTTGGTTCTGGTGGTCACGTACCTGGTGATTTTGTATGGTTTGCACGTGCCAGATTGGGAGTATGAGGTCACATCTCCGGACTCAACTGTGAAGCATTTTCTGGTGAAATGTGGAGTGAAAGGAGATACAGGGCCAGGTTGCAATGCTGTTGGCATGATTGATCGGTCTGTTCTTGGAATCCAGCATCTCTATGCACATCCTGTTTATCTGAAAACAGAGCAATGCAGCATGGCCTCTCCACGCAACGGCCCTCTTCCACCTAATGCCCCATCATGGTGTGAAGCTCCATTTGATCCTGAAGGGCTTCTTAGCTCGTTGATGGCGATTGTGACATGCTTAATCGGTCTCCAGATTGGCCATGTAATTGTCCATTTCAAGAAGCACAATGAGAGGATTAAGCGATGGTCGATTCTATCATTGTGCTTGCTCACTCTTGGCTTCTCTCTTCATCTCTTCGGTCTGCACATGAACAAATCACTGTACAGCCTGAGCTACACCTGTGTCACCACTGGCACTGCTGGTTTATTCTTCGTGGCTATCTACCTGCTGGTGGATGTGAAAGGGTACAAGAGGCCAGTTCTTCCCATGGAGTGGATGGGCAAGCATGCTCTGATGATCTTTGTTCTCGTAGCATGCAACGTTATCCCAGTACTGGTTCAGGGATTCTACTGGAAAGAGCCCAGCAACAACCTTCTGAAACTCATTGGAATAGGAGGCTGATCGATGAATATATATCTTCCGGAAGTTCATGAGAGGGGATAATTAAGCTGCAAGCACAACATCATCATTTGCAGTGTTAGGTAGTCTACTGTTGATTTAGTTTTTTTTTAAAAAAAATGGTCTACGGAATGGCATAGAAATGGAGCAAGGCCAAAAAAATCAATAAAGTCAACCAGC]
[+] EMBL AK072076 [GTATATATATATGCAGCTGCTGCTCATCGCCAAATCGACGGCAACAACTAACGATTGATCGCCATCAAGTATAGCTATAGCTAGCTAGCTTGTGAATTCATCAATGGAGATGACGACGACGACGGAGAAGTGCATCAGCAGCAGCAGCAGCGTCCATGGCGGCAACAATCGTCGAGAAGAATACCCCAAGGAGGGAGCCGACGACGACGTCGAGGCAGGCGTCCTCGGCCGTGACGGCGAGGCTGCGGCGACGACGACGCGGCAGCGCCTCGTGTCGCTCGACGTCTTCAGGGGAATCACCGTCGCGCTTATGATCCTCGTGGATGATGTTGGTGGCATTGTCCCGGCGATCAGCCACTCTCCATGGGATGGCGTGACGCTAGCGGACTTTGTCTTCCCCTTCTTCCTCTTCATCGTTGGGGTCTCCTTAGCTTTTGCCTATAAGAAAGTGCCAGACAAAATGTTAGCAACCAAAAAGGCCATGCTTAGGGCTGTAAAACTCTTCATTGTGGGCCTTATATTGCAAGGTGGCTTCTTCCATGGCATCCATGAACTTACCTATGGTGTCGATATTCGCAAAATTCGGTTAATGGGTGTACTACAGAGGATTGCAATAGCCTACTTAGTGGTGGCGCTTTGCGAAATCTGGCTAAGGAGGGTTAGTAGTGGCGGTAACATTGGCTCTGGCTCTATGTTAATAACAAGATACCATCATCAGATGTTTGTGGGTTTGGTTCTGGTGGTCACGTACCTGGTGATTTTGTATGGTTTGCACGTGCCAGATTGGGAGTATGAGGTCACATCTCCGGACTCAACTGTGAAGCATTTTCTGGTGAAATGTGGAGTGAAAGGAGATACAGGGCCAGGTTGCAATGCTGTTGGCATGATTGATCGGTCTGTTCTTGGAATCCAGCATCTCTATGCACATCCTGTTTATCTGAAAACAGAGCAATGCAGCATGGCCTCTCCACGCAACGGCCCTCTTCCACCTAATGCCCCATCATGGTGTGAAGCTCCATTTGATCCTGAAGGGCTTCTTAGCTCGTTGATGGCGATTGTGACATGCTTAATCGGTCTCCAGATTGGCCATGTAATTGTCCATTTCAAGAAGCACAATGAGAGGATTAAGCGATGGTCGATTCTATCATTGTGCTTGCTCACTCTTGGCTTCTCTCTTCATCTCTTCGGTCTGCACATGAACAAATCACTGTACAGCCTGAGCTACACCTGTGTCACCACTGGCACTGCTGGTTTATTCTTCGTGGCTATCTACCTGCTGGTGGATGTGAAAGGGTACAAGAGGCCAGTTCTTCCCATGGAGTGGATGGGCAAGCATGCTCTGATGATCTTTGTTCTCGTAGCATGCAACGTTATCCCAGTACTGGTTCAGGGATTCTACTGGAAAGAGCCCAGCAACAACCTTCTGAAACTCATTGGAATAGGAGGCTGATCGATGAATATATATCTTCCGGAAGTTCATGAGAGGGGATAATTAAGCTGCAAGCACAACATCATCATTTGCAGTGTTAGGTAGTCTACTGTTGATTTAGTTTTTTTTTAAAAAAAATGGTCTACGGAATGGCATAGAAATGGAGCAAGGCCAAAAAAATCAATAAAGTCAACCAGC]
[+] EMBL CB651952 [ AAATCCTTGAAAGCCACTAACGATTGATCGCCATCAAGTATAGCTATAGCTAGCTAGCTTGTGAATTCATCAATGGAGATGACGACGACGACGGAGAAGTGCATCAGCAGCAGCAGCAGCGTCCATGGCGGCAACAATCGTCGAGAAGAATACCCCAAGGAGGGAGCCGACGACGACGTCGAGGCAGGCGTCCTCGGCCGTGACGGCGAGGCTGCGGCGACGACGACGCGGCAGCGCCTCGTGTCGCTCGACGTCTTCAGGGGAATCACCGTCGCGCTTATGATCCTCGTGGATGATGTTGGTGGCATTGTCCCGGCGATCAGCCACTCTCCATGGGATGGCGTGACGCTAGCGGACTTTGTCTTCCCCTTCTTCCTCTTCATCGTTGGGGTCTCCTTAGCTTTTGCCTATAAGAAAGTGCCAGACAAAATGTTAGCAACCAAAAAGGCCATGCTTAGGGCTGTAAAACTCTTCATTGTGGGCCTTATATTGCAAGGTGGCTTCTTCCATGGCATCCATGAACTTACCTATGGTGTCGATATTCGCAAAATTCGGTTAATGGGTGTACTACAGAGGATTGCAATAGCCTACTTAGTGGTGGCGCTTTGCGAAATCTGGCTAAGGAGGGTTAGTAGTGGCGGTAACATTGGCTCTGGCTCTATGTTAATAACAAGATACCATCATCAGATGTTTGTGGGTTTGGTTCTGGTGGTCACGTACCTGGTGATTTT ]
[+] EMBL CA754879 [ GTATAGCTATAGCTAGCTAGCTTGTGAATTCATCAATGGAGATGACGACGACGACGGAGAAGTGCATCAGCAGCAGCAGCAGCGTCCATGGCGGCAACAATCGTCGAGAAGAATACCCCAAGGAGGGAGCCGACGACGACGTCGAGGCAGGCGTCCTCGGCCGTGACGGCGAGGCTGCGGCGACGACGACGCGGCAGCGCCTCGTGTCGCTCGACGTCTTCAGGGGAATCACCGTCGCGCTTATGATCCTCGTGGATGATGTTGGTGGCATTGTCCCGGCGATCAGCCACTCTCCATGGGATGGCGTGACGCTAGCGGACTTTGTCTTCCCCTTCTTCCTCTTCATCGTTGGGGTCTCCTTAGCTTTTGCCTATNAGAAAGTGCCAGACAAAATGTTAGCAACCAAAAAGGCCATGCTTAGGGCTGTAAAACTCTTCATTGTGGGCCTTATATTGCAAGGTGGCTTCTTCCATGGCATCCATGAACTTACCTATGGTGTCGATATTCGCAAAATTCGGTTAATGGGTGTACTACAGAGGATTGCAATAGCCTACTTAGTGGTGGCGCTTTGCGAAATCTGGCTAAGGAGGGTTAGTAGTGGCGGTAACAT ]
[+] EMBL CA754832 [ GTATAGCTATAGCTAGCTAGCTTGTGAATTCATCAATGGAGATGACGACGACGACGGAGAAGTGCATCAGCAGCAGCAGCAGCGTCCATGGCGGCAACAATCGTCGAGAAGAATACCCCAAGGAGGGAGCCGACGACGACGTCGAGGCAGGCGTCCTCGGCCGTGACGGCGAGGCTGCGGCGACGACGACGCGGC ]
consensusID : consensus_8563#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 422 fasta sequence
[ACCTGTGTCNCCGCTGGCACTGCTGGATTATTCTTCGTGCCAATCTACCTACTGGTGGATGTGAAAGGTTACAAGAGCCCGGTTTTCCCCACTGGAGTGGATGGGCAAGCATGCTCTGATGATCTTTGTTCTTGTAGCATGCAACATTGTCCCTGTACTGGTTCAGGGATTCTACTGGAAAGAGCCCAGCAACAACCTTGTTGAAACTCATTGGAATAGGGGGCTGAGCGATGAATATATATCTTCCGGAAGTTCATGATAGGGGATAATTAAGCTGCAAGCACAATATCATCAATTCCAGTGTTAGGAANTCTACTGCTGATTAGTTTTTTTTAAAAAAAAATAGAAGTGAGCCAAGCCAAAAATCCCATCAATGATCAATAAAATCAACCAGCTCCAGATCTGATTAAAGTGATTAAAAA]
[+] EMBL BM418557 [ACCTGTGTCNCCGCTGGCACTGCTGGATTATTCTTCGTGCCAATCTACCTACTGGTGGATGTGAAAGGTTACAAGAGCCCGGTTTTCCCCACTGGAGTGGATGGGCAAGCATGCTCTGATGATCTTTGTTCTTGTAGCATGCAACATTGTCCCTGTACTGGTTCAGGGATTCTACTGGAAAGAGCCCAGCAACAACCTTGTTGAAACTCATTGGAATAGGGGGCTGAGCGATGAATATATATCTTCCGGAAGTTCATGATAGGGGATAATTAAGCTGCAAGCACAATATCATCAATTCCAGTGTTAGGAANTCTACTGCTGATTAGTTTTTTTTAAAAAAAAATAGAAGTGAGCCAAGCCAAAAATCCCATCAATGATCAATAAAATCAACCAGCTCCAGATCTGATTAAAGTGATTAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8563#0 GTATATATATATGCAGCTGCTGCTCATCGCCAAATCGACGGCAACAACTAACGATTGATC 60
consensus_8563#1 ------------------------------------------------------------
consensus_8563#0 GCCATCAAGTATAGCTATAGCTAGCTAGCTTGTGAATTCATCAATGGAGATGACGACGAC 120
consensus_8563#1 ------------------------------------------------------------
consensus_8563#0 GACGGAGAAGTGCATCAGCAGCAGCAGCAGCGTCCATGGCGGCAACAATCGTCGAGAAGA 180
consensus_8563#1 ------------------------------------------------------------
consensus_8563#0 ATACCCCAAGGAGGGAGCCGACGACGACGTCGAGGCAGGCGTCCTCGGCCGTGACGGCGA 240
consensus_8563#1 ------------------------------------------------------------
consensus_8563#0 GGCTGCGGCGACGACGACGCGGCAGCGCCTCGTGTCGCTCGACGTCTTCAGGGGAATCAC 300
consensus_8563#1 ------------------------------------------------------------
consensus_8563#0 CGTCGCGCTTATGATCCTCGTGGATGATGTTGGTGGCATTGTCCCGGCGATCAGCCACTC 360
consensus_8563#1 ------------------------------------------------------------
consensus_8563#0 TCCATGGGATGGCGTGACGCTAGCGGACTTTGTCTTCCCCTTCTTCCTCTTCATCGTTGG 420
consensus_8563#1 ------------------------------------------------------------
consensus_8563#0 GGTCTCCTTAGCTTTTGCCTATAAGAAAGTGCCAGACAAAATGTTAGCAACCAAAAAGGC 480
consensus_8563#1 ------------------------------------------------------------
consensus_8563#0 CATGCTTAGGGCTGTAAAACTCTTCATTGTGGGCCTTATATTGCAAGGTGGCTTCTTCCA 540
consensus_8563#1 ------------------------------------------------------------
consensus_8563#0 TGGCATCCATGAACTTACCTATGGTGTCGATATTCGCAAAATTCGGTTAATGGGTGTACT 600
consensus_8563#1 ------------------------------------------------------------
consensus_8563#0 ACAGAGGATTGCAATAGCCTACTTAGTGGTGGCGCTTTGCGAAATCTGGCTAAGGAGGGT 660
consensus_8563#1 ------------------------------------------------------------
consensus_8563#0 TAGTAGTGGCGGTAACATTGGCTCTGGCTCTATGTTAATAACAAGATACCATCATCAGAT 720
consensus_8563#1 ------------------------------------------------------------
consensus_8563#0 GTTTGTGGGTTTGGTTCTGGTGGTCACGTACCTGGTGATTTTGTATGGTTTGCACGTGCC 780
consensus_8563#1 ------------------------------------------------------------
consensus_8563#0 AGATTGGGAGTATGAGGTCACATCTCCGGACTCAACTGTGAAGCATTTTCTGGTGAAATG 840
consensus_8563#1 ------------------------------------------------------------
consensus_8563#0 TGGAGTGAAAGGAGATACAGGGCCAGGTTGCAATGCTGTTGGCATGATTGATCGGTCTGT 900
consensus_8563#1 ------------------------------------------------------------
consensus_8563#0 TCTTGGAATCCAGCATCTCTATGCACATCCTGTTTATCTGAAAACAGAGCAATGCAGCAT 960
consensus_8563#1 ------------------------------------------------------------
consensus_8563#0 GGCCTCTCCACGCAACGGCCCTCTTCCACCTAATGCCCCATCATGGTGTGAAGCTCCATT 1020
consensus_8563#1 ------------------------------------------------------------
consensus_8563#0 TGATCCTGAAGGGCTTCTTAGCTCGTTGATGGCGATTGTGACATGCTTAATCGGTCTCCA 1080
consensus_8563#1 ------------------------------------------------------------
consensus_8563#0 GATTGGCCATGTAATTGTCCATTTCAAGAAGCACAATGAGAGGATTAAGCGATGGTCGAT 1140
consensus_8563#1 ------------------------------------------------------------
consensus_8563#0 TCTATCATTGTGCTTGCTCACTCTTGGCTTCTCTCTTCATCTCTTCGGTCTGCACATGAA 1200
consensus_8563#1 ------------------------------------------------------------
consensus_8563#0 CAAATCACTGTACAGCCTGAGCTACACCTGTGTCACCACTGGCACTGCTGGTTTATTCTT 1260
consensus_8563#1 -------------------------ACCTGTGTCNCCGCTGGCACTGCTGGATTATTCTT 35
********* ** ************* ********
consensus_8563#0 CGTGGCTATCTACCTGCTGGTGGATGTGAAAGGGTACAAGAGGCCAGTTCTTCCCA-TGG 1319
consensus_8563#1 CGTGCCAATCTACCTACTGGTGGATGTGAAAGGTTACAAGAGCCCGGTTTTCCCCACTGG 95
**** * ******** ***************** ******** ** *** * **** ***
consensus_8563#0 AGTGGATGGGCAAGCATGCTCTGATGATCTTTGTTCTCGTAGCATGCAACGTTATCCCAG 1379
consensus_8563#1 AGTGGATGGGCAAGCATGCTCTGATGATCTTTGTTCTTGTAGCATGCAACATTGTCCCTG 155
************************************* ************ ** **** *
consensus_8563#0 TACTGGTTCAGGGATTCTACTGGAAAGAGCCCAGCAACAACCTT-CTGAAACTCATTGGA 1438
consensus_8563#1 TACTGGTTCAGGGATTCTACTGGAAAGAGCCCAGCAACAACCTTGTTGAAACTCATTGGA 215
******************************************** **************
consensus_8563#0 ATAGGAGGCTGATCGATGAATATATATCTTCCGGAAGTTCATGAGAGGGGATAATTAAGC 1498
consensus_8563#1 ATAGGGGGCTGAGCGATGAATATATATCTTCCGGAAGTTCATGATAGGGGATAATTAAGC 275
***** ****** ******************************* ***************
consensus_8563#0 TGCAAGCACAACATCATCATTTGCAGTGTTAGGTAGTCTACTGTTGATTTAGTTTTTTTT 1558
consensus_8563#1 TGCAAGCACAATATCATCAATTCCAGTGTTAGGAANTCTACTGCTGATT-AGTTTTTTTT 334
*********** ******* ** ********** * ******* ***** **********
consensus_8563#0 TAAAAAAAATGGTCTACGGAATGGCATAGAAATGGAGCAA-GGCCAAAAAAATCAATAAA 1617
consensus_8563#1 AAAAAAAAATAGAAGTGAGCCAAGCCAAAAATCCCATCAATGATCAATAAAATCAACCAG 394
********* * * ** * ** * *** * *** ******** *
consensus_8563#0 GTC--AACCAGC---------------- 1627
consensus_8563#1 CTCCAGATCTGATTAAAGTGATTAAAAA 422
** * * *
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||