These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8565#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 844 fasta sequence [CCTCTCCCTCTCATCCTCCCATCCTCCCTCTCACTCTCACTCTCCTCCTCCCCATCCTCCCATCTCCCTCTCCCTCTCCCTCCTCCTTGGCAGCGGCGAGCGCAGACGGCGGCGGCAGACGGCGCGGCGCGCGGCCCCTCCCCTCCCTCCCTTTGCATCCGGCGCCGGTGGAGGGGAGGCATGGGGGCGGTGGCGGCGGCGGACGGCGGGCGTAGGCGGCGGCGGCGGACAGCGCGGCGCGCGGCCCCTCCCCTTGCATCCGTCACAGGCGGAGGGGAGGCATGGTGGCGACGGGCGCAGGCGGCGCGCGGCCCCTCCCTTCCCCCCTCGGCTACCCTTGCAGATCCAGCAGAGGGCCGGTGAGGCATGGGGGCGGCGGGCGCAGGCGGCGGCGACGACGGGACCCGCGCAGCTCCTCCTCTCCCCTCTCCTCCCCGGCAGCGACGGGAGCGCGCGGGCAGCGGATCCGGCGTCGGTGAAGGTAACGGACGGCGGATCCGTCGCCGGCAACCACGGGGGCGACGGCGGCGCGCCTCGGCTAGGGTGGCGGTGCCGGCGGCGGCGGCTGGATTAGGGTTAGGGTTTGTTTTTTCTTTTTTTTTGTTTCGATTTTTTATTTTCCCGTGCGGGCGGCTTAAGCCCCCGCACGCGAAAATCGATTTTCGCGTGCGGGTGCGTCACTCGCACAAAAAAATCGTGCATTTTCGCAGACGATTTCTTCCAGACGGTCGAATCTTCCGCACGCGAAAATCGATTTCATCCTCACGGAAAAATCCTCGTAGTAGTAGGGTGTGAATAGTTTGTTCCTACTTATATAAGTTAAATTAGACTTGCAAAAAAAAAA] [+] EMBL AK069208 [CCTCTCCCTCTCATCCTCCCATCCTCCCTCTCACTCTCACTCTCCTCCTCCCCATCCTCCCATCTCCCTCTCCCTCTCCCTCCTCCTTGGCAGCGGCGAGCGCAGACGGCGGCGGCAGACGGCGCGGCGCGCGGCCCCTCCCCTCCCTCCCTTTGCATCCGGCGCCGGTGGAGGGGAGGCATGGGGGCGGTGGCGGCGGCGGACGGCGGGCGTAGGCGGCGGCGGCGGACAGCGCGGCGCGCGGCCCCTCCCCTTGCATCCGTCACAGGCGGAGGGGAGGCATGGTGGCGACGGGCGCAGGCGGCGCGCGGCCCCTCCCTTCCCCCCTCGGCTACCCTTGCAGATCCAGCAGAGGGCCGGTGAGGCATGGGGGCGGCGGGCGCAGGCGGCGGCGACGACGGGACCCGCGCAGCTCCTCCTCTCCCCTCTCCTCCCCGGCAGCGACGGGAGCGCGCGGGCAGCGGATCCGGCGTCGGTGAAGGTAACGGACGGCGGATCCGTCGCCGGCAACCACGGGGGCGACGGCGGCGCGCCTCGGCTAGGGTGGCGGTGCCGGCGGCGGCGGCTGGATTAGGGTTAGGGTTTGTTTTTTCTTTTTTTTTGTTTCGATTTTTTATTTTCCCGTGCGGGCGGCTTAAGCCCCCGCACGCGAAAATCGATTTTCGCGTGCGGGTGCGTCACTCGCACAAAAAAATCGTGCATTTTCGCAGACGATTTCTTCCAGACGGTCGAATCTTCCGCACGCGAAAATCGATTTCATCCTCACGGAAAAATCCTCGTAGTA ] [+] EMBL AU077806 [ CTCATCCTCCCATCCTCCCTCTCACTCTCACTCTCCTCCTCCCCATCCTCCCATCTCCCTCTCCCTCTCCCTCCTCCTTGGCAGCGGCGAGCGCAGACGGCGGCGGCAGACGGCGCGGCGCG GGCCCCNCCCCNCCCTCCCTTTGCATCCGGCGCCGGTGGAGGGGAGGCATGGGGGCGGTGGCGGCGGCGGACGGCGGGCGTAGGCGGCGGCGGCGGACAGCGCGGCGCGGGNCCCCTCCCCTTGCATCCGTCACAGGCGGAGGGGAGGCATGGTGGCGACGGGCGCAGGCGGCGCGCGGCCCCTCCCTTNCCCCCTCGGCTCCCCTTGCAGATCCAGCAag ] [+] EMBL AU077807 [ GGGGCGACGGCGGCGCGCCTCGGCTNGGGTGGCGGTGCCGGCGGCGGCGGCTGGATTAGGGTTAGGGTTTGTTTTTTCTTTTTTTTTGTTTCGATTTTTTATTTTCCCGTGCGGGCGGCTTAAGCCCCCGCACGCGAAAATCGATTTTCGCGTGCGGGTGCGTCACTCGCACAAAAAAATCGTGCATTTTCGCAGACGATTTCTTCCAGACGGTCGAATCTTCCGCACGCGAAAATCGATTTCATCCTCACGGNAAAATCCTCGTAGTAGTAGGGTGTGAATAGTTTGTTCCTACTTATATAAGTTAAATTAGACTTGCAAAAAAAAAA] consensusID : consensus_8565#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 703 fasta sequence [GCANGATGCCCGCTTTAGTAACCCTCTCCCTCCTCNTNCCGCAGCGGCAAAACGCAGACTTGCGGCGGCAGACGGCGCGGCGCGCGGCCCCTCCCCTCCCTCCCTTTGCATCCNGCGCCGGTGGAGGGGAAGCATGGGGGCGGTGGCGGCGGCGGACGGCGGGCGTANGCGGCGGCGGCGGACATCGCGGCGCGCGGCCCCTCCCCTTGCATCCGTCACAGGCGGAGGGGANGCATGGTGGCGACGGGCGCANGCGGCGCGCGGCCCCTCCCTTCCCCCCTCGGCTCCCCTTGCAGATCCAGCANANGGCCGGTGATGCATGGGGGCGGCGGGCGCANGCTGTTTTATTACTGGACCCGCGCAGCTCCTCCTCTCCCCTCTCCTCCCCGGCAGCGACNGGAGCTCGCGGGCAGCGGATTCNGCGTCNGTGAANGTANCGGACGCGGATCCGTCCCNGCAACCACGGGGGCNACGCGGCCGCCTCNGCTAAGGTGGCCGTGCCTGCGCTGCNGCTGGATTAGGTTAAGGTTTGTTTTTTCTNTTTTTTTGTTTCNATTTTTATTTTCCCGTGCGGGCGGCTTAAGCCCCCGCACGCCAAAATCCATTTTCGCCTTTCGGGTTCCTTCACTCGCACAAAAAAATCNTNCATTTTTCCCANANNATTTCTTCCAAACGGTCCAATCTTCCNCCCCCAAAAATCCAA] [+] EMBL AA752965 [GCANGATGCCCGCTTTAGTAACCCTCTCCCTCCTCNTNCCGCAGCGGCAAAACGCAGACTTGCGGCGGCAGACGGCGCGGCGCGCGGCCCCTCCCCTCCCTCCCTTTGCATCCNGCGCCGGTGGAGGGGAAGCATGGGGGCGGTGGCGGCGGCGGACGGCGGGCGTANGCGGCGGCGGCGGACATCGCGGCGCGCGGCCCCTCCCCTTGCATCCGTCACAGGCGGAGGGGANGCATGGTGGCGACGGGCGCANGCGGCGCGCGGCCCCTCCCTTCCCCCCTCGGCTCCCCTTGCAGATCCAGCANANGGCCGGTGATGCATGGGGGCGGCGGGCGCANGCTGTTTTATTACTGGACCCGCGCAGCTCCTCCTCTCCCCTCTCCTCCCCGGCAGCGACNGGAGCTCGCGGGCAGCGGATTCNGCGTCNGTGAANGTANCGGACGCGGATCCGTCCCNGCAACCACGGGGGCNACGCGGCCGCCTCNGCTAAGGTGGCCGTGCCTGCGCTGCNGCTGGATTAGGTTAAGGTTTGTTTTTTCTNTTTTTTTGTTTCNATTTTTATTTTCCCGTGCGGGCGGCTTAAGCCCCCGCACGCCAAAATCCATTTTCGCCTTTCGGGTTCCTTCACTCGCACAAAAAAATCNTNCATTTTTCCCANANNATTTCTTCCAAACGGTCCAATCTTCCNCCCCCAAAAATCCAA] consensusID : consensus_8565#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 345 fasta sequence [CCCGTTTAAAAACCGCGGGCAGCGGCCCCGGCGTCAGTGAAAGTNTTTGACGGCGGATCCGTCNCCGGCAACCACGGGGGCNACCGCNGCGCGCCTCGGCTAAGGTGGCGGTGCCNGCGGCNGCGGCTGGATTAGGGTTAGGGTTTGTTTTTTCTTTTTTTTTGTTTCNATNTATTATTTTCCCGTGCGGGCGGCTTAAGCCCCCGCACGCGAAAATCGATTTTCGCGTGCGGGTGCGTCACTCGCACAAAANAATCGTGCATTTTCGCAGACNATNCTCCCAAACNGTCNAATCTTCCNCACGCGAAAANCGATTTCNTNNTNTTTGAAAAATCCCCNTNCCNA] [+] EMBL AA753327 [CCCGTTTAAAAACCGCGGGCAGCGGCCCCGGCGTCAGTGAAAGTNTTTGACGGCGGATCCGTCNCCGGCAACCACGGGGGCNACCGCNGCGCGCCTCGGCTAAGGTGGCGGTGCCNGCGGCNGCGGCTGGATTAGGGTTAGGGTTTGTTTTTTCTTTTTTTTTGTTTCNATNTATTATTTTCCCGTGCGGGCGGCTTAAGCCCCCGCACGCGAAAATCGATTTTCGCGTGCGGGTGCGTCACTCGCACAAAANAATCGTGCATTTTCGCAGACNATNCTCCCAAACNGTCNAATCTTCCNCACGCGAAAANCGATTTCNTNNTNTTTGAAAAATCCCCNTNCCNA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8565#0 CCTCTCCCTCTCATCCTCCCATCCTCCCTCTCACTCTCACTCTCCTCCTCCCCATCCTCC 60 consensus_8565#1 --------------------------------------------------GCANGATGCC 10 consensus_8565#2 ------------------------------------------------------------ consensus_8565#0 CATCTCCCTCTCCCTCTCCCTCCTCCTTG-GCAGCGGCGAG-CGCAGACG-GCGGCGGCA 117 consensus_8565#1 CGCTTTAGTAACCCTCTCCCTCCTCNTNCCGCAGCGGCAAAACGCAGACTTGCGGCGGCA 70 consensus_8565#2 ------------------------------------------------------------ consensus_8565#0 GACGGCGCGGCGCGCGGCCCCTCCCCTCCCTCCCTTTGCATCCGGCGCCGGTGGAGGGGA 177 consensus_8565#1 GACGGCGCGGCGCGCGGCCCCTCCCCTCCCTCCCTTTGCATCCNGCGCCGGTGGAGGGGA 130 consensus_8565#2 ------------------------------------------------------------ consensus_8565#0 GGCATGGGGGCGGTGGCGGCGGCGGACGGCGGGCGTAGGCGGCGGCGGCGGACAGCGCGG 237 consensus_8565#1 AGCATGGGGGCGGTGGCGGCGGCGGACGGCGGGCGTANGCGGCGGCGGCGGACATCGCGG 190 consensus_8565#2 ------------------------------------------------------------ consensus_8565#0 CGCGCGGCCCCTCCCCTTGCATCCGTCACAGGCGGAGGGGAGGCATGGTGGCGACGGGCG 297 consensus_8565#1 CGCGCGGCCCCTCCCCTTGCATCCGTCACAGGCGGAGGGGANGCATGGTGGCGACGGGCG 250 consensus_8565#2 ------------------------------------------------------------ consensus_8565#0 CAGGCGGCGCGCGGCCCCTCCCTTCCCCCCTCGGCTACCCTTGCAGATCCAGCAGAGGGC 357 consensus_8565#1 CANGCGGCGCGCGGCCCCTCCCTTCCCCCCTCGGCTCCCCTTGCAGATCCAGCANANGGC 310 consensus_8565#2 ------------------------------------------------------------ consensus_8565#0 CGGTGAGGCATGGGGGCGGCGGGCGCAGGCGGCGGCGACGACGGGACCCGCGCAGCTCCT 417 consensus_8565#1 CGGTGATGCATGGGGGCGGCGGGCGCANGCTGTTTT-ATTACTGGACCCGCGCAGCTCCT 369 consensus_8565#2 ------------------------------------------------------------ consensus_8565#0 CCTCTCCCCTCTCCTCCCCGGCAGCGACGGGAGCGCGCGGGCAGCGGATCCGGCGTCGGT 477 consensus_8565#1 CCTCTCCCCTCTCCTCCCCGGCAGCGACNGGAGCTCGCGGGCAGCGGATTCNGCGTCNGT 429 consensus_8565#2 ----------------------CCCGTTTAAAAACCGCGGGCAGCGGCCCCGGCGTCAGT 38 ** * ************ * ***** ** consensus_8565#0 GAAGGTAACGGACGGCGGATCCGTCGCCGGCAACCACGGGGGCGACGGCGGCGCGCCTCG 537 consensus_8565#1 GAANGTANCGGACG-CGGATCCGTC-CCNGCAACCACGGGGGCNACG-CGGC-CGCCTCN 485 consensus_8565#2 GAAAGTNTTTGACGGCGGATCCGTCNCCGGCAACCACGGGGGCNACCGCNGCGCGCCTCG 98 *** ** **** ********** ** ************** ** * ** ****** consensus_8565#0 GCTAGGGTGGCGGTGCCGGCGGCGGCGGCTGGATTAGGGTTAGGGTTTGTTTTTTCTTTT 597 consensus_8565#1 GCTAAGGTGGCCGTGCCTGCG-CTGCNGCTGGATTAGG-TTAAGGTTTGTTTTTTCTNTT 543 consensus_8565#2 GCTAAGGTGGCGGTGCCNGCGGCNGCGGCTGGATTAGGGTTAGGGTTTGTTTTTTCTTTT 158 **** ****** ***** *** * ** *********** *** ************** ** consensus_8565#0 TTTTTGTTTCGATTTTTTATTTTCCCGTGCGGGCGGCTTAAGCCCCCGCACGCGAAAATC 657 consensus_8565#1 TTTTTGTTTCNATTTTT-ATTTTCCCGTGCGGGCGGCTTAAGCCCCCGCACGCCAAAATC 602 consensus_8565#2 TTTTTGTTTCNATNTATTATTTTCCCGTGCGGGCGGCTTAAGCCCCCGCACGCGAAAATC 218 ********** ** * * *********************************** ****** consensus_8565#0 GATTTTCGCGTGCGGG--TGCGTCACTCGCACAAAAAAATCGTGCATTTT-CGCAGACGA 714 consensus_8565#1 CATTTTCGCCTTTCGGGTTCCTTCACTCGCACAAAAAAATCNTNCATTTTTCCCANANNA 662 consensus_8565#2 GATTTTCGCGTGCGGG--TGCGTCACTCGCACAAAANAATCGTGCATTTT-CGCAGACNA 275 ******** * ** * * ************** **** * ****** * ** * * consensus_8565#0 TTTCTTCCAGACGGTCGAATCTTCCGCACGCGAAAATCGATTTCATCCTCACGGAAAAAT 774 consensus_8565#1 TTTCTTCCAAACGGTCCAATCTTCCNCCCCCAAAAATCCAA------------------- 703 consensus_8565#2 TN-CTCCCAAACNGTCNAATCTTCCNCACGCGAAAANCGATTTCNTNNTNTTTGAAAAAT 334 * ** *** ** *** ******** * * * **** * * consensus_8565#0 CCTCGTAGTAGTAGGGTGTGAATAGTTTGTTCCTACTTATATAAGTTAAATTAGACTTGC 834 consensus_8565#1 ------------------------------------------------------------ consensus_8565#2 CCCCNTNCCNA------------------------------------------------- 345 consensus_8565#0 AAAAAAAAAA 844 consensus_8565#1 ---------- consensus_8565#2 ---------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||