cluster # 8565

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Oryza sativa
cluster # 8565 cluster # 8565 Sequences # 5 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8565#0 length = 844 sequences # 3

consensus_8565#1 length = 703 sequences # 1
consensus_8565#2 length = 345 sequences # 1

consensusID : consensus_8565#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 844
fasta sequence

                              [CCTCTCCCTCTCATCCTCCCATCCTCCCTCTCACTCTCACTCTCCTCCTCCCCATCCTCCCATCTCCCTCTCCCTCTCCCTCCTCCTTGGCAGCGGCGAGCGCAGACGGCGGCGGCAGACGGCGCGGCGCGCGGCCCCTCCCCTCCCTCCCTTTGCATCCGGCGCCGGTGGAGGGGAGGCATGGGGGCGGTGGCGGCGGCGGACGGCGGGCGTAGGCGGCGGCGGCGGACAGCGCGGCGCGCGGCCCCTCCCCTTGCATCCGTCACAGGCGGAGGGGAGGCATGGTGGCGACGGGCGCAGGCGGCGCGCGGCCCCTCCCTTCCCCCCTCGGCTACCCTTGCAGATCCAGCAGAGGGCCGGTGAGGCATGGGGGCGGCGGGCGCAGGCGGCGGCGACGACGGGACCCGCGCAGCTCCTCCTCTCCCCTCTCCTCCCCGGCAGCGACGGGAGCGCGCGGGCAGCGGATCCGGCGTCGGTGAAGGTAACGGACGGCGGATCCGTCGCCGGCAACCACGGGGGCGACGGCGGCGCGCCTCGGCTAGGGTGGCGGTGCCGGCGGCGGCGGCTGGATTAGGGTTAGGGTTTGTTTTTTCTTTTTTTTTGTTTCGATTTTTTATTTTCCCGTGCGGGCGGCTTAAGCCCCCGCACGCGAAAATCGATTTTCGCGTGCGGGTGCGTCACTCGCACAAAAAAATCGTGCATTTTCGCAGACGATTTCTTCCAGACGGTCGAATCTTCCGCACGCGAAAATCGATTTCATCCTCACGGAAAAATCCTCGTAGTAGTAGGGTGTGAATAGTTTGTTCCTACTTATATAAGTTAAATTAGACTTGCAAAAAAAAAA]

[+] EMBL AK069208             [CCTCTCCCTCTCATCCTCCCATCCTCCCTCTCACTCTCACTCTCCTCCTCCCCATCCTCCCATCTCCCTCTCCCTCTCCCTCCTCCTTGGCAGCGGCGAGCGCAGACGGCGGCGGCAGACGGCGCGGCGCGCGGCCCCTCCCCTCCCTCCCTTTGCATCCGGCGCCGGTGGAGGGGAGGCATGGGGGCGGTGGCGGCGGCGGACGGCGGGCGTAGGCGGCGGCGGCGGACAGCGCGGCGCGCGGCCCCTCCCCTTGCATCCGTCACAGGCGGAGGGGAGGCATGGTGGCGACGGGCGCAGGCGGCGCGCGGCCCCTCCCTTCCCCCCTCGGCTACCCTTGCAGATCCAGCAGAGGGCCGGTGAGGCATGGGGGCGGCGGGCGCAGGCGGCGGCGACGACGGGACCCGCGCAGCTCCTCCTCTCCCCTCTCCTCCCCGGCAGCGACGGGAGCGCGCGGGCAGCGGATCCGGCGTCGGTGAAGGTAACGGACGGCGGATCCGTCGCCGGCAACCACGGGGGCGACGGCGGCGCGCCTCGGCTAGGGTGGCGGTGCCGGCGGCGGCGGCTGGATTAGGGTTAGGGTTTGTTTTTTCTTTTTTTTTGTTTCGATTTTTTATTTTCCCGTGCGGGCGGCTTAAGCCCCCGCACGCGAAAATCGATTTTCGCGTGCGGGTGCGTCACTCGCACAAAAAAATCGTGCATTTTCGCAGACGATTTCTTCCAGACGGTCGAATCTTCCGCACGCGAAAATCGATTTCATCCTCACGGAAAAATCCTCGTAGTA                                                            ]
[+] EMBL AU077806             [         CTCATCCTCCCATCCTCCCTCTCACTCTCACTCTCCTCCTCCCCATCCTCCCATCTCCCTCTCCCTCTCCCTCCTCCTTGGCAGCGGCGAGCGCAGACGGCGGCGGCAGACGGCGCGGCGCG GGCCCCNCCCCNCCCTCCCTTTGCATCCGGCGCCGGTGGAGGGGAGGCATGGGGGCGGTGGCGGCGGCGGACGGCGGGCGTAGGCGGCGGCGGCGGACAGCGCGGCGCGGGNCCCCTCCCCTTGCATCCGTCACAGGCGGAGGGGAGGCATGGTGGCGACGGGCGCAGGCGGCGCGCGGCCCCTCCCTTNCCCCCTCGGCTCCCCTTGCAGATCCAGCAag                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL AU077807             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   GGGGCGACGGCGGCGCGCCTCGGCTNGGGTGGCGGTGCCGGCGGCGGCGGCTGGATTAGGGTTAGGGTTTGTTTTTTCTTTTTTTTTGTTTCGATTTTTTATTTTCCCGTGCGGGCGGCTTAAGCCCCCGCACGCGAAAATCGATTTTCGCGTGCGGGTGCGTCACTCGCACAAAAAAATCGTGCATTTTCGCAGACGATTTCTTCCAGACGGTCGAATCTTCCGCACGCGAAAATCGATTTCATCCTCACGGNAAAATCCTCGTAGTAGTAGGGTGTGAATAGTTTGTTCCTACTTATATAAGTTAAATTAGACTTGCAAAAAAAAAA]




>consensus_8565#0
CCTCTCCCTCTCATCCTCCCATCCTCCCTCTCACTCTCACTCTCCTCCTCCCCATCCTCC
CATCTCCCTCTCCCTCTCCCTCCTCCTTGGCAGCGGCGAGCGCAGACGGCGGCGGCAGAC
GGCGCGGCGCGCGGCCCCTCCCCTCCCTCCCTTTGCATCCGGCGCCGGTGGAGGGGAGGC
ATGGGGGCGGTGGCGGCGGCGGACGGCGGGCGTAGGCGGCGGCGGCGGACAGCGCGGCGC
GCGGCCCCTCCCCTTGCATCCGTCACAGGCGGAGGGGAGGCATGGTGGCGACGGGCGCAG
GCGGCGCGCGGCCCCTCCCTTCCCCCCTCGGCTACCCTTGCAGATCCAGCAGAGGGCCGG
TGAGGCATGGGGGCGGCGGGCGCAGGCGGCGGCGACGACGGGACCCGCGCAGCTCCTCCT
CTCCCCTCTCCTCCCCGGCAGCGACGGGAGCGCGCGGGCAGCGGATCCGGCGTCGGTGAA
GGTAACGGACGGCGGATCCGTCGCCGGCAACCACGGGGGCGACGGCGGCGCGCCTCGGCT
AGGGTGGCGGTGCCGGCGGCGGCGGCTGGATTAGGGTTAGGGTTTGTTTTTTCTTTTTTT
TTGTTTCGATTTTTTATTTTCCCGTGCGGGCGGCTTAAGCCCCCGCACGCGAAAATCGAT
TTTCGCGTGCGGGTGCGTCACTCGCACAAAAAAATCGTGCATTTTCGCAGACGATTTCTT
CCAGACGGTCGAATCTTCCGCACGCGAAAATCGATTTCATCCTCACGGAAAAATCCTCGT
AGTAGTAGGGTGTGAATAGTTTGTTCCTACTTATATAAGTTAAATTAGACTTGCAAAAAA
AAAA

consensusID : consensus_8565#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 703
fasta sequence

                              [GCANGATGCCCGCTTTAGTAACCCTCTCCCTCCTCNTNCCGCAGCGGCAAAACGCAGACTTGCGGCGGCAGACGGCGCGGCGCGCGGCCCCTCCCCTCCCTCCCTTTGCATCCNGCGCCGGTGGAGGGGAAGCATGGGGGCGGTGGCGGCGGCGGACGGCGGGCGTANGCGGCGGCGGCGGACATCGCGGCGCGCGGCCCCTCCCCTTGCATCCGTCACAGGCGGAGGGGANGCATGGTGGCGACGGGCGCANGCGGCGCGCGGCCCCTCCCTTCCCCCCTCGGCTCCCCTTGCAGATCCAGCANANGGCCGGTGATGCATGGGGGCGGCGGGCGCANGCTGTTTTATTACTGGACCCGCGCAGCTCCTCCTCTCCCCTCTCCTCCCCGGCAGCGACNGGAGCTCGCGGGCAGCGGATTCNGCGTCNGTGAANGTANCGGACGCGGATCCGTCCCNGCAACCACGGGGGCNACGCGGCCGCCTCNGCTAAGGTGGCCGTGCCTGCGCTGCNGCTGGATTAGGTTAAGGTTTGTTTTTTCTNTTTTTTTGTTTCNATTTTTATTTTCCCGTGCGGGCGGCTTAAGCCCCCGCACGCCAAAATCCATTTTCGCCTTTCGGGTTCCTTCACTCGCACAAAAAAATCNTNCATTTTTCCCANANNATTTCTTCCAAACGGTCCAATCTTCCNCCCCCAAAAATCCAA]

[+] EMBL AA752965             [GCANGATGCCCGCTTTAGTAACCCTCTCCCTCCTCNTNCCGCAGCGGCAAAACGCAGACTTGCGGCGGCAGACGGCGCGGCGCGCGGCCCCTCCCCTCCCTCCCTTTGCATCCNGCGCCGGTGGAGGGGAAGCATGGGGGCGGTGGCGGCGGCGGACGGCGGGCGTANGCGGCGGCGGCGGACATCGCGGCGCGCGGCCCCTCCCCTTGCATCCGTCACAGGCGGAGGGGANGCATGGTGGCGACGGGCGCANGCGGCGCGCGGCCCCTCCCTTCCCCCCTCGGCTCCCCTTGCAGATCCAGCANANGGCCGGTGATGCATGGGGGCGGCGGGCGCANGCTGTTTTATTACTGGACCCGCGCAGCTCCTCCTCTCCCCTCTCCTCCCCGGCAGCGACNGGAGCTCGCGGGCAGCGGATTCNGCGTCNGTGAANGTANCGGACGCGGATCCGTCCCNGCAACCACGGGGGCNACGCGGCCGCCTCNGCTAAGGTGGCCGTGCCTGCGCTGCNGCTGGATTAGGTTAAGGTTTGTTTTTTCTNTTTTTTTGTTTCNATTTTTATTTTCCCGTGCGGGCGGCTTAAGCCCCCGCACGCCAAAATCCATTTTCGCCTTTCGGGTTCCTTCACTCGCACAAAAAAATCNTNCATTTTTCCCANANNATTTCTTCCAAACGGTCCAATCTTCCNCCCCCAAAAATCCAA]




>consensus_8565#1
GCANGATGCCCGCTTTAGTAACCCTCTCCCTCCTCNTNCCGCAGCGGCAAAACGCAGACT
TGCGGCGGCAGACGGCGCGGCGCGCGGCCCCTCCCCTCCCTCCCTTTGCATCCNGCGCCG
GTGGAGGGGAAGCATGGGGGCGGTGGCGGCGGCGGACGGCGGGCGTANGCGGCGGCGGCG
GACATCGCGGCGCGCGGCCCCTCCCCTTGCATCCGTCACAGGCGGAGGGGANGCATGGTG
GCGACGGGCGCANGCGGCGCGCGGCCCCTCCCTTCCCCCCTCGGCTCCCCTTGCAGATCC
AGCANANGGCCGGTGATGCATGGGGGCGGCGGGCGCANGCTGTTTTATTACTGGACCCGC
GCAGCTCCTCCTCTCCCCTCTCCTCCCCGGCAGCGACNGGAGCTCGCGGGCAGCGGATTC
NGCGTCNGTGAANGTANCGGACGCGGATCCGTCCCNGCAACCACGGGGGCNACGCGGCCG
CCTCNGCTAAGGTGGCCGTGCCTGCGCTGCNGCTGGATTAGGTTAAGGTTTGTTTTTTCT
NTTTTTTTGTTTCNATTTTTATTTTCCCGTGCGGGCGGCTTAAGCCCCCGCACGCCAAAA
TCCATTTTCGCCTTTCGGGTTCCTTCACTCGCACAAAAAAATCNTNCATTTTTCCCANAN
NATTTCTTCCAAACGGTCCAATCTTCCNCCCCCAAAAATCCAA

consensusID : consensus_8565#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 345
fasta sequence

                              [CCCGTTTAAAAACCGCGGGCAGCGGCCCCGGCGTCAGTGAAAGTNTTTGACGGCGGATCCGTCNCCGGCAACCACGGGGGCNACCGCNGCGCGCCTCGGCTAAGGTGGCGGTGCCNGCGGCNGCGGCTGGATTAGGGTTAGGGTTTGTTTTTTCTTTTTTTTTGTTTCNATNTATTATTTTCCCGTGCGGGCGGCTTAAGCCCCCGCACGCGAAAATCGATTTTCGCGTGCGGGTGCGTCACTCGCACAAAANAATCGTGCATTTTCGCAGACNATNCTCCCAAACNGTCNAATCTTCCNCACGCGAAAANCGATTTCNTNNTNTTTGAAAAATCCCCNTNCCNA]

[+] EMBL AA753327             [CCCGTTTAAAAACCGCGGGCAGCGGCCCCGGCGTCAGTGAAAGTNTTTGACGGCGGATCCGTCNCCGGCAACCACGGGGGCNACCGCNGCGCGCCTCGGCTAAGGTGGCGGTGCCNGCGGCNGCGGCTGGATTAGGGTTAGGGTTTGTTTTTTCTTTTTTTTTGTTTCNATNTATTATTTTCCCGTGCGGGCGGCTTAAGCCCCCGCACGCGAAAATCGATTTTCGCGTGCGGGTGCGTCACTCGCACAAAANAATCGTGCATTTTCGCAGACNATNCTCCCAAACNGTCNAATCTTCCNCACGCGAAAANCGATTTCNTNNTNTTTGAAAAATCCCCNTNCCNA]




>consensus_8565#2
CCCGTTTAAAAACCGCGGGCAGCGGCCCCGGCGTCAGTGAAAGTNTTTGACGGCGGATCC
GTCNCCGGCAACCACGGGGGCNACCGCNGCGCGCCTCGGCTAAGGTGGCGGTGCCNGCGG
CNGCGGCTGGATTAGGGTTAGGGTTTGTTTTTTCTTTTTTTTTGTTTCNATNTATTATTT
TCCCGTGCGGGCGGCTTAAGCCCCCGCACGCGAAAATCGATTTTCGCGTGCGGGTGCGTC
ACTCGCACAAAANAATCGTGCATTTTCGCAGACNATNCTCCCAAACNGTCNAATCTTCCN
CACGCGAAAANCGATTTCNTNNTNTTTGAAAAATCCCCNTNCCNA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8565#0      CCTCTCCCTCTCATCCTCCCATCCTCCCTCTCACTCTCACTCTCCTCCTCCCCATCCTCC 60
consensus_8565#1      --------------------------------------------------GCANGATGCC 10
consensus_8565#2      ------------------------------------------------------------
                                                                                  

consensus_8565#0      CATCTCCCTCTCCCTCTCCCTCCTCCTTG-GCAGCGGCGAG-CGCAGACG-GCGGCGGCA 117
consensus_8565#1      CGCTTTAGTAACCCTCTCCCTCCTCNTNCCGCAGCGGCAAAACGCAGACTTGCGGCGGCA 70
consensus_8565#2      ------------------------------------------------------------
                                                                                  

consensus_8565#0      GACGGCGCGGCGCGCGGCCCCTCCCCTCCCTCCCTTTGCATCCGGCGCCGGTGGAGGGGA 177
consensus_8565#1      GACGGCGCGGCGCGCGGCCCCTCCCCTCCCTCCCTTTGCATCCNGCGCCGGTGGAGGGGA 130
consensus_8565#2      ------------------------------------------------------------
                                                                                  

consensus_8565#0      GGCATGGGGGCGGTGGCGGCGGCGGACGGCGGGCGTAGGCGGCGGCGGCGGACAGCGCGG 237
consensus_8565#1      AGCATGGGGGCGGTGGCGGCGGCGGACGGCGGGCGTANGCGGCGGCGGCGGACATCGCGG 190
consensus_8565#2      ------------------------------------------------------------
                                                                                  

consensus_8565#0      CGCGCGGCCCCTCCCCTTGCATCCGTCACAGGCGGAGGGGAGGCATGGTGGCGACGGGCG 297
consensus_8565#1      CGCGCGGCCCCTCCCCTTGCATCCGTCACAGGCGGAGGGGANGCATGGTGGCGACGGGCG 250
consensus_8565#2      ------------------------------------------------------------
                                                                                  

consensus_8565#0      CAGGCGGCGCGCGGCCCCTCCCTTCCCCCCTCGGCTACCCTTGCAGATCCAGCAGAGGGC 357
consensus_8565#1      CANGCGGCGCGCGGCCCCTCCCTTCCCCCCTCGGCTCCCCTTGCAGATCCAGCANANGGC 310
consensus_8565#2      ------------------------------------------------------------
                                                                                  

consensus_8565#0      CGGTGAGGCATGGGGGCGGCGGGCGCAGGCGGCGGCGACGACGGGACCCGCGCAGCTCCT 417
consensus_8565#1      CGGTGATGCATGGGGGCGGCGGGCGCANGCTGTTTT-ATTACTGGACCCGCGCAGCTCCT 369
consensus_8565#2      ------------------------------------------------------------
                                                                                  

consensus_8565#0      CCTCTCCCCTCTCCTCCCCGGCAGCGACGGGAGCGCGCGGGCAGCGGATCCGGCGTCGGT 477
consensus_8565#1      CCTCTCCCCTCTCCTCCCCGGCAGCGACNGGAGCTCGCGGGCAGCGGATTCNGCGTCNGT 429
consensus_8565#2      ----------------------CCCGTTTAAAAACCGCGGGCAGCGGCCCCGGCGTCAGT 38
                                              **     *   ************   * ***** **

consensus_8565#0      GAAGGTAACGGACGGCGGATCCGTCGCCGGCAACCACGGGGGCGACGGCGGCGCGCCTCG 537
consensus_8565#1      GAANGTANCGGACG-CGGATCCGTC-CCNGCAACCACGGGGGCNACG-CGGC-CGCCTCN 485
consensus_8565#2      GAAAGTNTTTGACGGCGGATCCGTCNCCGGCAACCACGGGGGCNACCGCNGCGCGCCTCG 98
                      *** **    **** ********** ** ************** **  * ** ****** 

consensus_8565#0      GCTAGGGTGGCGGTGCCGGCGGCGGCGGCTGGATTAGGGTTAGGGTTTGTTTTTTCTTTT 597
consensus_8565#1      GCTAAGGTGGCCGTGCCTGCG-CTGCNGCTGGATTAGG-TTAAGGTTTGTTTTTTCTNTT 543
consensus_8565#2      GCTAAGGTGGCGGTGCCNGCGGCNGCGGCTGGATTAGGGTTAGGGTTTGTTTTTTCTTTT 158
                      **** ****** ***** *** * ** *********** *** ************** **

consensus_8565#0      TTTTTGTTTCGATTTTTTATTTTCCCGTGCGGGCGGCTTAAGCCCCCGCACGCGAAAATC 657
consensus_8565#1      TTTTTGTTTCNATTTTT-ATTTTCCCGTGCGGGCGGCTTAAGCCCCCGCACGCCAAAATC 602
consensus_8565#2      TTTTTGTTTCNATNTATTATTTTCCCGTGCGGGCGGCTTAAGCCCCCGCACGCGAAAATC 218
                      ********** ** * * *********************************** ******

consensus_8565#0      GATTTTCGCGTGCGGG--TGCGTCACTCGCACAAAAAAATCGTGCATTTT-CGCAGACGA 714
consensus_8565#1      CATTTTCGCCTTTCGGGTTCCTTCACTCGCACAAAAAAATCNTNCATTTTTCCCANANNA 662
consensus_8565#2      GATTTTCGCGTGCGGG--TGCGTCACTCGCACAAAANAATCGTGCATTTT-CGCAGACNA 275
                       ******** *   **  * * ************** **** * ****** * ** *  *

consensus_8565#0      TTTCTTCCAGACGGTCGAATCTTCCGCACGCGAAAATCGATTTCATCCTCACGGAAAAAT 774
consensus_8565#1      TTTCTTCCAAACGGTCCAATCTTCCNCCCCCAAAAATCCAA------------------- 703
consensus_8565#2      TN-CTCCCAAACNGTCNAATCTTCCNCACGCGAAAANCGATTTCNTNNTNTTTGAAAAAT 334
                      *  ** *** ** *** ******** * * * **** * *                    

consensus_8565#0      CCTCGTAGTAGTAGGGTGTGAATAGTTTGTTCCTACTTATATAAGTTAAATTAGACTTGC 834
consensus_8565#1      ------------------------------------------------------------
consensus_8565#2      CCCCNTNCCNA------------------------------------------------- 345
                                                                                  

consensus_8565#0      AAAAAAAAAA 844
consensus_8565#1      ----------
consensus_8565#2      ----------