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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8566#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1898 fasta sequence
[AAACGAGAAGCTCCAAGCTCGCAATAATTCACCAAGAATCGCACCACTTTTCACCTTTTCTT-CTCCTCCTCCATTTCCATCCATGGCG-ACGCTGCTGCTGCTGCTGCACACGGCGCAACAGTGAGCTATAGCTAGAGCTCGGCACCACGGGTTAGCAATGGCGGTGGCGGCGGCGGCGGCGGCGAGGCGGCGAGATGTCTCTTGTCTTCTCCTCCTCCTGTGCTTCAGCTCGTCAATGGCGGCGACCGGCGGCGGCGGCGGCGGCGGCGAGCAGGAGGCTGACAGGGTGGCGCGGCTCCCGGGGCAGCCGGCGAGCCCCGCCGTGTCGCAGTCCGCCGGCTACGTCGGCGTCGACGAGCGGCACGGCAGGGCGCTGTTCTACTGGTTCTTCGAGGCGCAGGCGTCGCCGGCGCCGGAGAAGAAGCCGCTGCTCCTCTGGCTCAATGGAGGACCTGGTTGCTCTTCCATTGGCTATGGTGCTGCATCAGAGCTAGGGCCTCTCAGAGTTGCAAGACAAGGAGCAGCACTAGAGTTCAACCAGTATGGCTGGAACAAAGAGGCTAACCTCCTGTTCTTGGAATCTCCTGTTGGGGTCGGCTTCTCCTACACCAACACATCCTCTGACCTCTCCAATCTTAATGATGATTTTGTAGCTGAGGATGCTTATAGTTTCCTGGTGAACTGGTTCAAGAGATTTCCTCAGTACAAGGACAATGAGTTCTACATCTCAGGGGAGAGCTATGCAGGTCACTATGTGCCCCAACTTGCTGACCTTGTCTATGAGAGGAACAAAGACAAAAGGGCCAGCACATATATCAACCTCAAGGGGTTCATTGTAGGCAACCCTCTCACCGATGATTACTATGATTCAAAAGGTTTGGCTGAGTATGCCTGGAGCCATGCAATTGTGTCGGATCAAGTTTACGAGCGCATCAAGAAAACTTGCAACTTCAAGAACTCCAACTGGACTGACGATTGCAATGCTGCAATGAACATAATCTTCAGTCAGTACAATCAGATAGATATATACAACATTTATGCCCCAAAGTGCCTTCTAAACAGTACTTCAGCATCTTCACCTGATCGTGCATTCTTCGCAAATAACCAGGAACAATTCAGGTGGAGAATCAAGATGTTTTCAGGCTATGATCCATGCTACTCATCCTATGCTGAGGACTACTTCAATAAGCATGATGTGCAAGAAGCATTCCA-TGCAAA-TG-CCA-GTGGACTGC--TTCCAGGG-AAGTGGCAAGTTTGCAGTGACCAAATCCTCAACTCTTACAATTTCTCAGTACTTTCCATCCTACCTATATACTCCAAGCTCATCAAAGCAGGGCTGAGAGTTTGGCTCTACAGCGGTGATGCTGACGGCAGGGTCCCGGTTATCAGTTCTCGGTACTGCGTGGAAGCACTCGGCCTACCGATCAAGACCGATTGGCAATCTTGGTACCTTGACAAGCAGGTTGCTGGGAGGTTTGTGGAGTACCATGGAATGACAATGGTGACTGTCAGAGGGGCAGGTCACCTGGTTCCCCTCAACAAACCTGCTGAAGGGCTTATGCTGATAAATGCATTCCTTCATGGTGAGAAGCTTCCGACAAGCAGATGATATGCGCTGCTGATGAAGCTTTGGAGGTACAAGATGGCATGAGATACAGGCATGGACATCAATTTTCATTGAAAGGCGCCAATCGGATAGATTTGATATGGTAGTATCCAAATCAATTTCAAGTGCGCCGTAAATTCAGTACTCTGTTGAACATTCTTTTAAATCTGTTGTTGACTATGACTTTCTTCTTTTGTGTTTTTTTTACTCACCTTTTCCATATTATAAGTCGTTTTGGGTTTGTCCTATAATCAAACTTTTTAAGTCTGACAGTTTATAGAAAAATAAAGTAACA]
[+] EMBL AK106800 [AAACGAGAAGCTCCAAGCTCGCAATAATTCACCAAGAATCGCACCACTTTTCACCTTTTCTT CTCCTCCTCCATTTCCATCCATGGCG ACGCTGCTGCTGCTGCTGCACACGGCGCAACAGTGAGCTATAGCTAGAGCTCGGCACCACGGGTTAGCAATGGCGGTGGCGGCGGCGGCGGCGGCGAGGCGGCGAGATGTCTCTTGTCTTCTCCTCCTCCTGTGCTTCAGCTCGTCAATGGCGGCGACCGGCGGCGGCGGCGGCGGCGGCGAGCAGGAGGCTGACAGGGTGGCGCGGCTCCCGGGGCAGCCGGCGAGCCCCGCCGTGTCGCAGTCCGCCGGCTACGTCGGCGTCGACGAGCGGCACGGCAGGGCGCTGTTCTACTGGTTCTTCGAGGCGCAGGCGTCGCCGGCGCCGGAGAAGAAGCCGCTGCTCCTCTGGCTCAATGGAGGACCTGGTTGCTCTTCCATTGGCTATGGTGCTGCATCAGAGCTAGGGCCTCTCAGAGTTGCAAGACAAGGAGCAGCACTAGAGTTCAACCAGTATGGCTGGAACAAAGAGGCTAACCTCCTGTTCTTGGAATCTCCTGTTGGGGTCGGCTTCTCCTACACCAACACATCCTCTGACCTCTCCAATCTTAATGATGATTTTGTAGCTGAGGATGCTTATAGTTTCCTGGTGAACTGGTTCAAGAGATTTCCTCAGTACAAGGACAATGAGTTCTACATCTCAGGGGAGAGCTATGCAGGTCACTATGTGCCCCAACTTGCTGACCTTGTCTATGAGAGGAACAAAGACAAAAGGGCCAGCACATATATCAACCTCAAGGGGTTCATTGTAGGCAACCCTCTCACCGATGATTACTATGATTCAAAAGGTTTGGCTGAGTATGCCTGGAGCCATGCAATTGTGTCGGATCAAGTTTACGAGCGCATCAAGAAAACTTGCAACTTCAAGAACTCCAACTGGACTGACGATTGCAATGCTGCAATGAACATAATCTTCAGTCAGTACAATCAGATAGATATATACAACATTTATGCCCCAAAGTGCCTTCTAAACAGTACTTCAGCATCTTCACCTGATCGTGCATTCTTCGCAAATAACCAGGAACAATTCAGGTGGAGAATCAAGATGTTTTCAGGCTATGATCCATGCTACTCATCCTATGCTGAGGACTACTTCAATAAGCATGATGTGCAAGAAGCATTCCA TGCAAA TG CCA GTGGACTGC TTCCAGGG AAGTGGCAAGTTTGCAGTGACCAAATCCTCAACTCTTACAATTTCTCAGTACTTTCCATCCTACCTATATACTCCAAGCTCATCAAAGCAGGGCTGAGAGTTTGGCTCTACAGCGGTGATGCTGACGGCAGGGTCCCGGTTATCAGTTCTCGGTACTGCGTGGAAGCACTCGGCCTACCGATCAAGACCGATTGGCAATCTTGGTACCTTGACAAGCAGGTTGCTGGGAGGTTTGTGGAGTACCATGGAATGACAATGGTGACTGTCAGAGGGGCAGGTCACCTGGTTCCCCTCAACAAACCTGCTGAAGGGCTTATGCTGATAAATGCATTCCTTCATGGTGAGAAGCTTCCGACAAGCAGATGATATGCGCTGCTGATGAAGCTTTGGAGGTACAAGATGGCATGAGATACAGGCATGGACATCAATTTTCATTGAAAGGCGCCAATCGGATAGATTTGATATGGTAGTATCCAAATCAATTTCAAGTGCGCCGTAAATTCAGTACTCTGTTGAACATTCTTTTAAATCTGTTGTTGACTATGACTTTCTTCTTTTGTGTT ]
[+] EMBL CB632948 [ TTTACCTTTTTTTACTCCTCCTCCATTTCCATCCACGGCGTACGCTGCTGCTGCTGCTGCACACGGCGCAACAGTGTGCTATAGCTAGTGCTCGGCACCACGGGTTAGCAATGGCGGTGGCGGCGGCGGCGGCGGCGTGGCGGCGAGATGTCTCTTGTCTTCTCCTCCTCCTGTGCTTCAGCTCGTCAATGGCGGCGAC CGGCGGCGGCGGCGGCGAGCAGGAGGCTGACAGGGTGGCGCGGCTCCCGGGGCAGCCGGCGAGCCCCGCCGTGTCGCAGTTCGCCGGCTACGTCGGCGTCGACGAGCGGCACGGCAGGGCGCTGTTCTACTGGTTCTTCGAGGCGCAGGCGTCGCCGGCGCCGGAGAAGAAGCCGCTGCTCCTCTGGCTCAATGGAGGACCTGGTTGCTCTTCCATTGGCTATGGTGCTGCATCAGAGCTAGGGCCTCTCAGAGTTGCAAGACAAGGAGCAGCACTAGAGTTCAACCAGTATGGCTGGAACAAAGAGGCTAACCTCCTGTTCTTGGAGTCTCCTGTTGGGGTCGGCTTCTCCTACACCAACACATCCTCTGACCTCTCCAATCTTAATGATGATTTTGTAGCTGAGGATGCTTATAGTTTCCTGGTGAACTGGTTCAAGAGATTTCCTCAGTACAAGGACAAT ]
[-] EMBL CB632949 [ CAATTCAGGTGGAGAATCAAGATGTTTTCAGGCTATGATCCATGCTACTCATCCTATGCTGAGGACTACTTCAATAAGCATGATGTGCAAGAAGCATTCCA TGCAAA TG CCA GTGGACTGC TTCCAGGG AAGTGGCAAGTTTGCAGTGACCAAATCCTCAACTCTTACAATTTCTCAGTACTTTCCATCCTACCTATATACTCCAAGCTCATCAAAGCAGGGCTGAGAGTTTGGCTCTACAGCGGTGATGCTGACGGCAGGGTCCCGGTTATCAGTTCTCGGTACTGCGTGGAAGCACTCGGCCTACCGATCAAGACCGATTGGCAATCTTGGTACCTTGACAAGCAGGTTGCTGGGAGGTTTGTGGAGTACCATGGAATGACAATGGTGACTGTCAGAGGGGCAGGTCACCTGGTTCCCCTCAACAAACCTGCTGAAGGGCTTATGCTGATAAATGCATTCCTTCATGGTGAGAAGCTTCCGACAAGCAGATGATATGCGCTGCTGATGAAGCTTTGGAGGTACAAGATGGCATGAGATACAGGCATGGACATCAATTTTCATTGAAAGGCGCCAATCGGATAGATTTGATATGGTAGTATCCAAATCAATTTCAAGTGCGCCGTAAATTCAGTACTCTGTTGAACATTCTTTTAAATCTGTTGTTGACTATGACTTTCTTCTTTTGTGTTTTTTTTACTCACCTTTTCCATATTATAAGTCGTTTTGGGTTTGTCCTATAATCAAACTTTTTAAGTCTGACAGTTTATAGAAAAATAAAGTAACA]
[+] EMBL BM418686 [ TTCCAGTGCAAANTGCCCACGTGGACTGCCTTTCCAGGGAAAGTGGCAAGTTTNCAGTGACCCAATCCTCAACTCTTACAATTTCTCAGTACTTTCCATCCTACCTATATACTCCAAGCTCATCAAAGCAGGGCTGAGAGTTTGGCTCTACAGCGGTGATGCTGACGGCAGGGTCCCGGTTATCAGTTCTCGGTACTGCGTGGAAGCACTCGGCCTACCGATCAAGACCGATTGGCAATCTTGGTACCTTGACAAGCAGGTTGCTGGGAGGTTTGTGGAGTACCATGGAATGACAATGGTGACTGTCAGAGGGGCAGGTCACCTGGTTCCCCTCAACAAACCTGCTGAAGGGCTTATGCTGATAAATGCATTCCTTCATGGTGAGAAGCTTCCGACAAGCAGATGATATGCGCTGCTGATGAAGCTTTGGAGGTACAAGATGGCATGAGATACAGGCATGGACATCAATTTTCATTGAAAGGCGCC ATCGGATAGATTTGATATGGTAGTATCCAAATCAATTTCAAGTGCGCCGTAAATTCAGTACTCTGTTGAACATTCTTTTNCATCTGTTGTTGACTATGACTTTaaaaaaa ]
consensusID : consensus_8566#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 612 fasta sequence
[TCACCAAGAATCGCACCACTTTTCACCTTTTCTTCTCCTCCTCCATTTCCATCCATGGCGACNNCTCTGCTGCTGCTGCACACGGCGCAACAGTGAGCTATAGCTAGAGCTCGGCACCACGGGTTAGCAATGGCGGTGGCGGCGGCGGCGGCGGCGGCGGCGAGGCGGCGAGATGTCTCTTGTCTTCTCCTCCTCCTGTGCTTCAGCTCGTCAATGGCGGCAACCGGCGGCGGCGGCGGCAAGCAGGAGGCTGACAGGGTGGCGCGGCTCCCGGGGCAGCCGGCGAGCCCCGCCGTGTCGCAGTTCGCCGGCTACGTCGGCGTCGACGAGCGGCACGGCAGGGCGCTGTTCTACTGGTTCTTCGAGGCGCAGGCGTCGCCGGCGCCGGAGAAGAAGCCGCTGCTCCTCTGGCTCAATGGAGGACCTGGGTGCTCTTCCATTGGCTATGGGGCTGCATCAGAGCTAGGGCCTCTGAGAGTTGCGAGACNAGGAGCAGGACTAGAGGTTACTAAGTATGGCTGGAACAAAGAGGCTAACGCTGCTGTTGTTGGAGCCTGCTGGTGGGGGCGGGTTGTCGCACACCGACGCATCGGGTGGACTCGGGCGTGGTGA]
[+] EMBL CA757073 [TCACCAAGAATCGCACCACTTTTCACCTTTTCTTCTCCTCCTCCATTTCCATCCATGGCGACNNCTCTGCTGCTGCTGCACACGGCGCAACAGTGAGCTATAGCTAGAGCTCGGCACCACGGGTTAGCAATGGCGGTGGCGGCGGCGGCGGCGGCGGCGGCGAGGCGGCGAGATGTCTCTTGTCTTCTCCTCCTCCTGTGCTTCAGCTCGTCAATGGCGGCAACCGGCGGCGGCGGCGGCAAGCAGGAGGCTGACAGGGTGGCGCGGCTCCCGGGGCAGCCGGCGAGCCCCGCCGTGTCGCAGTTCGCCGGCTACGTCGGCGTCGACGAGCGGCACGGCAGGGCGCTGTTCTACTGGTTCTTCGAGGCGCAGGCGTCGCCGGCGCCGGAGAAGAAGCCGCTGCTCCTCTGGCTCAATGGAGGACCTGGGTGCTCTTCCATTGGCTATGGGGCTGCATCAGAGCTAGGGCCTCTGAGAGTTGCGAGACNAGGAGCAGGACTAGAGGTTACTAAGTATGGCTGGAACAAAGAGGCTAACGCTGCTGTTGTTGGAGCCTGCTGGTGGGGGCGGGTTGTCGCACACCGACGCATCGGGTGGACTCGGGCGTGGTGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8566#0 AAACGAGAAGCTCCAAGCTCGCAATAATTCACCAAGAATCGCACCACTTTTCACCTTTTC 60
consensus_8566#1 ----------------------------TCACCAAGAATCGCACCACTTTTCACCTTTTC 32
********************************
consensus_8566#0 TTCTCCTCCTCCATTTCCATCCATGGCGACGCTGCTGCTGCTGCTGCACACGGCGCAACA 120
consensus_8566#1 TTCTCCTCCTCCATTTCCATCCATGGCGACNNCTCTGCTGCTGCTGCACACGGCGCAACA 92
****************************** **************************
consensus_8566#0 GTGAGCTATAGCTAGAGCTCGGCACCACGGGTTAGCAATGGCGGTGGCGGCGGCGGCGGC 180
consensus_8566#1 GTGAGCTATAGCTAGAGCTCGGCACCACGGGTTAGCAATGGCGGTGGCGGCGGCGGCGGC 152
************************************************************
consensus_8566#0 GGCG------AGGCGGCGAGATGTCTCTTGTCTTCTCCTCCTCCTGTGCTTCAGCTCGTC 234
consensus_8566#1 GGCGGCGGCGAGGCGGCGAGATGTCTCTTGTCTTCTCCTCCTCCTGTGCTTCAGCTCGTC 212
**** **************************************************
consensus_8566#0 AATGGCGGCGACCGGCGGCGGCGGCGGCGGCGGCGAGCAGGAGGCTGACAGGGTGGCGCG 294
consensus_8566#1 AATGGCGGCAACCGGCGGCGGCGGCG------GCAAGCAGGAGGCTGACAGGGTGGCGCG 266
********* **************** ** *************************
consensus_8566#0 GCTCCCGGGGCAGCCGGCGAGCCCCGCCGTGTCGCAGTCCGCCGGCTACGTCGGCGTCGA 354
consensus_8566#1 GCTCCCGGGGCAGCCGGCGAGCCCCGCCGTGTCGCAGTTCGCCGGCTACGTCGGCGTCGA 326
************************************** *********************
consensus_8566#0 CGAGCGGCACGGCAGGGCGCTGTTCTACTGGTTCTTCGAGGCGCAGGCGTCGCCGGCGCC 414
consensus_8566#1 CGAGCGGCACGGCAGGGCGCTGTTCTACTGGTTCTTCGAGGCGCAGGCGTCGCCGGCGCC 386
************************************************************
consensus_8566#0 GGAGAAGAAGCCGCTGCTCCTCTGGCTCAATGGAGGACCTGGTTGCTCTTCCATTGGCTA 474
consensus_8566#1 GGAGAAGAAGCCGCTGCTCCTCTGGCTCAATGGAGGACCTGGGTGCTCTTCCATTGGCTA 446
****************************************** *****************
consensus_8566#0 TGGTGCTGCATCAGAGCTAGGGCCTCTCAGAGTTGCAAGACAAGGAGCAGCACTAGAGTT 534
consensus_8566#1 TGGGGCTGCATCAGAGCTAGGGCCTCTGAGAGTTGCGAGACNAGGAGCAGGACTAGAGGT 506
*** *********************** ******** **** ******** ******* *
consensus_8566#0 CAACCAGTATGGCTGGAACAAAGAGGCTAAC-CTCCTGTTCTTGGAATCTCCTGTTGGGG 593
consensus_8566#1 TACTAAGTATGGCTGGAACAAAGAGGCTAACGCTGCTGTTGTTGGAGCCTGCTGGTGGGG 566
* ************************** ** ***** ***** ** *** *****
consensus_8566#0 TCGGCTTCTCCTACACCAACACATCCTCTGACCTCTCCAATCTTAATGATGATTTTGTAG 653
consensus_8566#1 GCGGGTTGTCGCACACCGACGCATCGGGTGGACTC---GGGCGTGGTGA----------- 612
*** ** ** ***** ** **** ** *** * * ***
consensus_8566#0 CTGAGGATGCTTATAGTTTCCTGGTGAACTGGTTCAAGAGATTTCCTCAGTACAAGGACA 713
consensus_8566#1 ------------------------------------------------------------
consensus_8566#0 ATGAGTTCTACATCTCAGGGGAGAGCTATGCAGGTCACTATGTGCCCCAACTTGCTGACC 773
consensus_8566#1 ------------------------------------------------------------
consensus_8566#0 TTGTCTATGAGAGGAACAAAGACAAAAGGGCCAGCACATATATCAACCTCAAGGGGTTCA 833
consensus_8566#1 ------------------------------------------------------------
consensus_8566#0 TTGTAGGCAACCCTCTCACCGATGATTACTATGATTCAAAAGGTTTGGCTGAGTATGCCT 893
consensus_8566#1 ------------------------------------------------------------
consensus_8566#0 GGAGCCATGCAATTGTGTCGGATCAAGTTTACGAGCGCATCAAGAAAACTTGCAACTTCA 953
consensus_8566#1 ------------------------------------------------------------
consensus_8566#0 AGAACTCCAACTGGACTGACGATTGCAATGCTGCAATGAACATAATCTTCAGTCAGTACA 1013
consensus_8566#1 ------------------------------------------------------------
consensus_8566#0 ATCAGATAGATATATACAACATTTATGCCCCAAAGTGCCTTCTAAACAGTACTTCAGCAT 1073
consensus_8566#1 ------------------------------------------------------------
consensus_8566#0 CTTCACCTGATCGTGCATTCTTCGCAAATAACCAGGAACAATTCAGGTGGAGAATCAAGA 1133
consensus_8566#1 ------------------------------------------------------------
consensus_8566#0 TGTTTTCAGGCTATGATCCATGCTACTCATCCTATGCTGAGGACTACTTCAATAAGCATG 1193
consensus_8566#1 ------------------------------------------------------------
consensus_8566#0 ATGTGCAAGAAGCATTCCATGCAAATGCCAGTGGACTGCTTCCAGGGAAGTGGCAAGTTT 1253
consensus_8566#1 ------------------------------------------------------------
consensus_8566#0 GCAGTGACCAAATCCTCAACTCTTACAATTTCTCAGTACTTTCCATCCTACCTATATACT 1313
consensus_8566#1 ------------------------------------------------------------
consensus_8566#0 CCAAGCTCATCAAAGCAGGGCTGAGAGTTTGGCTCTACAGCGGTGATGCTGACGGCAGGG 1373
consensus_8566#1 ------------------------------------------------------------
consensus_8566#0 TCCCGGTTATCAGTTCTCGGTACTGCGTGGAAGCACTCGGCCTACCGATCAAGACCGATT 1433
consensus_8566#1 ------------------------------------------------------------
consensus_8566#0 GGCAATCTTGGTACCTTGACAAGCAGGTTGCTGGGAGGTTTGTGGAGTACCATGGAATGA 1493
consensus_8566#1 ------------------------------------------------------------
consensus_8566#0 CAATGGTGACTGTCAGAGGGGCAGGTCACCTGGTTCCCCTCAACAAACCTGCTGAAGGGC 1553
consensus_8566#1 ------------------------------------------------------------
consensus_8566#0 TTATGCTGATAAATGCATTCCTTCATGGTGAGAAGCTTCCGACAAGCAGATGATATGCGC 1613
consensus_8566#1 ------------------------------------------------------------
consensus_8566#0 TGCTGATGAAGCTTTGGAGGTACAAGATGGCATGAGATACAGGCATGGACATCAATTTTC 1673
consensus_8566#1 ------------------------------------------------------------
consensus_8566#0 ATTGAAAGGCGCCAATCGGATAGATTTGATATGGTAGTATCCAAATCAATTTCAAGTGCG 1733
consensus_8566#1 ------------------------------------------------------------
consensus_8566#0 CCGTAAATTCAGTACTCTGTTGAACATTCTTTTAAATCTGTTGTTGACTATGACTTTCTT 1793
consensus_8566#1 ------------------------------------------------------------
consensus_8566#0 CTTTTGTGTTTTTTTTACTCACCTTTTCCATATTATAAGTCGTTTTGGGTTTGTCCTATA 1853
consensus_8566#1 ------------------------------------------------------------
consensus_8566#0 ATCAAACTTTTTAAGTCTGACAGTTTATAGAAAAATAAAGTAACA 1898
consensus_8566#1 ---------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||