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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8572#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1301 fasta sequence
[CGCGCGGCCTCCGGTCGTCGTCGCGACTCCGCTGCCGCCGTCGCCCGGCGCCGCCGGTGATCCCGCTCATGTGCTAGTAGAAGGCGTTCGGAGCTCTTTGGGAGTGTCGCACGCATGGAGATGACCAGAAGCCTTACGCTCGTGCCGCTCCCGGCGACGCTCCGGCCGGCATCCGCGGCCTGTCGCCGGCGGCGGAGGCGGCGAGGGCTTCCCTTCGGTGCACTCTTCTCACCATCGCCTCCTTCGAACCAGCAGCAGCAGGAAATGCACATCAGGGCGCTGCAGCCGCGGCAGGATTGGGTGGGGGAGTGGGTCCGGAGCAACGACACGCTAGTCCGCGGCCTGCCCATCCTCGGCGGCGGCGCCTCCCTGCTCGCCGTCCTCCTCAACCGTGCGGTTTCCGGCATTGCAGCTGTCGCCGACGCCTCCAGTTCGCAGTCAAGGGCTGACATACTGACTCTTGCTCTCTCCGTAACTGATATTCTTGCTGGCCTTGTTTGGTTGTCCATCCGGCCGAAATCCATTTCTCCTGTTGTTCCTCGAGGTGTCGAGTGCAAACGGGTAGGAACGGGTGTATTGGACTCGGCTCTTCGTGAACTACTTTGGACATGGGATTCCCTTACAACTGCAACTTGTTGCAAATCCTTGGTTGTTGTGTATGGAGGTAATTGTGTTCTTCAAATTGGGGTTGCTGCTGGCTCTCCAGAGGATGGTAATGCAGTTATGGTGGATGCACAGAAGTTCATGCAAGGTTCCCTTTATAGAAGTGCCATGGAATCCAAGAAGCAATCTTACCTAGCAAATCTTGCCTTATATCCTGGAAGGACTGAACTACCATTCTTGCCAGCTAACACGCAGGCCCTAATATTGCAACCAATTGGTGATAAAGGAATTGCAGTTATTGGTGGTGACACTATAAGGGGGTTCACTAATCTTGATCAGGCATGGATTGCAATGATAGCAGATAAACTGGATGCTACATTGTCAAAGTCGTAAGAACGCGTAGTTTGTTGGATATTGTTTGTATCTTGCAATTGGCCAAACTGTCACGAGAGATGATCATCTGTCACTGTACATGTTCAAGTTACAGGTAGAGTTTGCAAAACCAACGGATAAAACAGTACAGGGCTGGGGTTGACCAATTGTTTTAAGCCAGGCTGTATGATTAGGCTTGATTAAGTTTGACCAGCATGAATTGATTACAATGTTAGTTACTTCTTGTAACCAGTCACTGTTGGCTGAATGAATCACATTACTGATGCTTTCATTTGTAAGATCTCATCACATTTCAAAGAGTTTGC]
[+] EMBL AK066690 [CGCGCGGCCTCCGGTCGTCGTCGCGACTCCGCTGCCGCCGTCGCCCGGCGCCGCCGGTGATCCCGCTCATGTGCTAGTAGAAGGCGTTCGGAGCTCTTTGGGAGTGTCGCACGCATGGAGATGACCAGAAGCCTTACGCTCGTGCCGCTCCCGGCGACGCTCCGGCCGGCATCCGCGGCCTGTCGCCGGCGGCGGAGGCGGCGAGGGCTTCCCTTCGGTGCACTCTTCTCACCATCGCCTCCTTCGAACCAGCAGCAGCAGGAAATGCACATCAGGGCGCTGCAGCCGCGGCAGGATTGGGTGGGGGAGTGGGTCCGGAGCAACGACACGCTAGTCCGCGGCCTGCCCATCCTCGGCGGCGGCGCCTCCCTGCTCGCCGTCCTCCTCAACCGTGCGGTTTCCGGCATTGCAGCTGTCGCCGACGCCTCCAGTTCGCAGTCAAGGGCTGACATACTGACTCTTGCTCTCTCCGTAACTGATATTCTTGCTGGCCTTGTTTGGTTGTCCATCCGGCCGAAATCCATTTCTCCTGTTGTTCCTCGAGGTGTCGAGTGCAAACGGGTAGGAACGGGTGTATTGGACTCGGCTCTTCGTGAACTACTTTGGACATGGGATTCCCTTACAACTGCAACTTGTTGCAAATCCTTGGTTGTTGTGTATGGAGGTAATTGTGTTCTTCAAATTGGGGTTGCTGCTGGCTCTCCAGAGGATGGTAATGCAGTTATGGTGGATGCACAGAAGTTCATGCAAGGTTCCCTTTATAGAAGTGCCATGGAATCCAAGAAGCAATCTTACCTAGCAAATCTTGCCTTATATCCTGGAAGGACTGAACTACCATTCTTGCCAGCTAACACGCAGGCCCTAATATTGCAACCAATTGGTGATAAAGGAATTGCAGTTATTGGTGGTGACACTATAAGGGGGTTCACTAATCTTGATCAGGCATGGATTGCAATGATAGCAGATAAACTGGATGCTACATTGTCAAAGTCGTAAGAACGCGTAGTTTGTTGGATATTGTTTGTATCTTGCAATTGGCCAAACTGTCACGAGAGATGATCATCTGTCACTGTACATGTTCAAGTTACAGGTAGAGTTTGCAAAACCAACGGATAAAACAGTACAGGGCTGGGGTTGACCAATTGTTTTAAGCCAGGCTGTATGATTAGGCTTGATTAAGTTTGACCAGCATGAATTGATTACAATGTTAGTTACTTCTTGTAACCAGTCACTGTTGGCTGAATGAATCACATTACTGATGCTTTCATTTGTAAGATCTC ]
[+] EMBL AK104273 [ GCGGCCTCCGGTCGTCGTCGCGACTCCGCTGCCGCCGTCGCCCGGCGCCGCCGGTGATCCCGCTCATGTGCTAGTAGAAGGCGTTCGGAGCTCTTTGGGAGTGTCGCACGCATGGAGATGACCAGAAGCCTTACGCTCGTGCCGCTCCCGGCGACGCTCCGGCCGGCATCCGCGGCCTGTCGCCGGCGGCGGAGGCGGCGAGGGCTTCCCTTCGGTGCACTCTTCTCACCATCGCCTCCTTCGAACCAGCAGCAGCAGGAAATGCACATCAGGGCGCTGCAGCCGCGGCAGGATTGGGTGGGGGAGTGGGTCCGGAGCAACGACACGCTAGTCCGCGGCCTGCCCATCCTCGGCGGCGGCGCCTCCCTGCTCGCCGTCCTCCTCAACCGTGCGGTTTCCGGCATTGCAGCTGTCGCCGACGCCTCCAGTTCGCAGTCAAGGGCTGACATACTGACTCTTGCTCTCTCCGTAACTGATATTCTTGCTGGCCTTGTTTGGTTGTCCATCCGGCCGAAATCCATTTCTCCTGTTGTTCCTCGAGGTGTCGAGTGCAAACGGGTAGGAACGGGTGTATTGGACTCGGCTCTTCGTGAACTACTTTGGACATGGGATTCCCTTACAACTGCAACTTGTTGCAAATCCTTGGTTGTTGTGTATGGAGGTAATTGTGTTCTTCAAATTGGGGTTGCTGCTGGCTCTCCAGAGGATGGTAATGCAGTTATGGTGGATGCACAGAAGTTCATGCAAGGTTCCCTTTATAGAAGTGCCATGGAATCCAAGAAGCAATCTTACCTAGCAAATCTTGCCTTATATCCTGGAAGGACTGAACTACCATTCTTGCCAGCTAACACGCAGGCCCTAATATTGCAACCAATTGGTGATAAAGGAATTGCAGTTATTGGTGGTGACACTATAAGGGGGTTCACTAATCTTGATCAGGCATGGATTGCAATGATAGCAGATAAACTGGATGCTACATTGTCAAAGTCGTAAGAACGCGTAGTTTGTTGGATATTGTTTGTATCTTGCAATTGGCCAAACTGTCACGAGAGATGATCATCTGTCACTGTACATGTTCAAGTTACAGGTAGAGTTTGCAAAACCAACGGATAAAACAGTACAGGGCTGGGGTTGACCAATTGTTTTAAGCCAGGCTGTATGATTAGGCTTGATTAAGTTTGACCAGCATGAATTGATTACAATGTTAGTTACTTCTTGTAACCAGTCACTGTTGGCTGAATGAATCACATTACTGATGCTTTCATTTGTAAG ]
[-] EMBL CB638814 [ TTGTTGCAAATCCTTGGTTGTTGTGTATGGAGGTAATTGTGTTCTTCAAATTGGGGTTGCTGCTGGCTCTCCAGAGGATGGTAATGCAGTTATGGTGGATGCACAGAAGTTCATGCAAGGTTCCCTTTATAGAAGTGCCATGGAATCCAAGAAGCAATCTTACCTAGCAAATCTTGCCTTATATCCTGGAAGGACTGAACTACCATTCTTGCCAGCTAACACGCAGGCCCTAATATTGCAACCAATTGGTGATAAAGGAATTGCAGTTATTGGTGGTGACACTATAAGGGGGTTCACTAATCTTGATCAGGCATGGATTGCAATGATAGCAGATAAACTGGATGCTACATTGTCAAAGTCGTAAGAACGCGTAGTTTGTTGGATATTGTTTGTATCTTGCAATTGGCCAAACTGTCACGAGAGATGATCATCTGTCACTGTACATGTTCAAGTTACAGGTAGAGTTTGCAAAACCAACGGATAAAACAGTACAGGGCTGGGGTTGACCAATTGTTTTAAGCCAGGCTGTATGATTAGGCTTGATTAAGTTTGACCAGCATGAATTGATTACAATGTTAGTTACTTCTTGTAACCAGTCACTGTTGGCTGAATGAATCACATTACTGATGCTTTCATTTGTAAGATCTCATCACATTTCAAAGAGTTTGC]
[-] EMBL CB639168 [ GTGGATGCACAGAAGTTCATGCAAGGTTCCTTTTATAGAAGTGCCATGGAATCCAAGAAGCAATCTTACCTAGCAAATCTTGCCTTATATCCTGGAAGGACTGAACTACCATTCTTGCCAGCTAACACGCAGGCCCTAATATTGCAACCAATTGGTGATAAAGGAATTGCAGTTATTGGTGGTGACACTATAAGGGGGTTCACTAATCTTGATCAGGCATGGATTGCAATGATAGCAGATAAACTGGATGCTACATTGTCAAAGTCGTAAGAACGCGTAGTTTGTTGGATATTGTTTGTATCTTGCAATTGGCCAAACTGTCACGAGAGATGATCATCTGTCACTGTACATGTTCAAGTTACAGGAAAAGTTTGCAAAACCAACGGATAAAACAGTACAGGGCTGGGGTTGACCAATTGTTTTAAGCCAGGCTGTATGATTAGGCTTGATTAAGTTTGACCAGCATGAATTGATTACAATGTTAGTTACTTCTTGTAACCAGTCACTGTTGGCTGAATGAATCACATTACTGATGCTTTCATTTGTAAGATCTCATCACATTTCAAAGAGTTTGC]
consensusID : consensus_8572#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 349 fasta sequence
[GGTGGACCACCTATAAGGGGGTTCCACCTATATCCTGTGTATTCCACGGCCACTGGATTGCCACATGATAGCCACGATTATAGACCTGGGATGGCTACACTTGTCCACAAGTCGTGAAGATACGCGTAGNTTGGTTGGATATTGTTTGTATCTTGCCATTGGCCCAAACTGTCACCGAGAGATGATCATATGTCACTGTACATGTTCATAGTNACAGGTAGAGTTNGCCAAATACCNGACGGATATAACCCGTACAGGCTGGGGTTGACCCATNGTTTTAAGCCAGGCTGTATGATTAGGCTTGATTAAGTTTGACCAGCATGAANTGATTNCCATGTTAAAAAAAAAA]
[+] EMBL BM419032 [GGTGGACCACCTATAAGGGGGTTCCACCTATATCCTGTGTATTCCACGGCCACTGGATTGCCACATGATAGCCACGATTATAGACCTGGGATGGCTACACTTGTCCACAAGTCGTGAAGATACGCGTAGNTTGGTTGGATATTGTTTGTATCTTGCCATTGGCCCAAACTGTCACCGAGAGATGATCATATGTCACTGTACATGTTCATAGTNACAGGTAGAGTTNGCCAAATACCNGACGGATATAACCCGTACAGGCTGGGGTTGACCCATNGTTTTAAGCCAGGCTGTATGATTAGGCTTGATTAAGTTTGACCAGCATGAANTGATTNCCATGTTAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8572#0 CGCGCGGCCTCCGGTCGTCGTCGCGACTCCGCTGCCGCCGTCGCCCGGCGCCGCCGGTGA 60
consensus_8572#1 ------------------------------------------------------------
consensus_8572#0 TCCCGCTCATGTGCTAGTAGAAGGCGTTCGGAGCTCTTTGGGAGTGTCGCACGCATGGAG 120
consensus_8572#1 ------------------------------------------------------------
consensus_8572#0 ATGACCAGAAGCCTTACGCTCGTGCCGCTCCCGGCGACGCTCCGGCCGGCATCCGCGGCC 180
consensus_8572#1 ------------------------------------------------------------
consensus_8572#0 TGTCGCCGGCGGCGGAGGCGGCGAGGGCTTCCCTTCGGTGCACTCTTCTCACCATCGCCT 240
consensus_8572#1 ------------------------------------------------------------
consensus_8572#0 CCTTCGAACCAGCAGCAGCAGGAAATGCACATCAGGGCGCTGCAGCCGCGGCAGGATTGG 300
consensus_8572#1 ------------------------------------------------------------
consensus_8572#0 GTGGGGGAGTGGGTCCGGAGCAACGACACGCTAGTCCGCGGCCTGCCCATCCTCGGCGGC 360
consensus_8572#1 ------------------------------------------------------------
consensus_8572#0 GGCGCCTCCCTGCTCGCCGTCCTCCTCAACCGTGCGGTTTCCGGCATTGCAGCTGTCGCC 420
consensus_8572#1 ------------------------------------------------------------
consensus_8572#0 GACGCCTCCAGTTCGCAGTCAAGGGCTGACATACTGACTCTTGCTCTCTCCGTAACTGAT 480
consensus_8572#1 ------------------------------------------------------------
consensus_8572#0 ATTCTTGCTGGCCTTGTTTGGTTGTCCATCCGGCCGAAATCCATTTCTCCTGTTGTTCCT 540
consensus_8572#1 ------------------------------------------------------------
consensus_8572#0 CGAGGTGTCGAGTGCAAACGGGTAGGAACGGGTGTATTGGACTCGGCTCTTCGTGAACTA 600
consensus_8572#1 ------------------------------------------------------------
consensus_8572#0 CTTTGGACATGGGATTCCCTTACAACTGCAACTTGTTGCAAATCCTTGGTTGTTGTGTAT 660
consensus_8572#1 ------------------------------------------------------------
consensus_8572#0 GGAGGTAATTGTGTTCTTCAAATTGGGGTTGCTGCTGGCTCTCCAGAGGATGGTAATGCA 720
consensus_8572#1 ------------------------------------------------------------
consensus_8572#0 GTTATGGTGGATGCACAGAAGTTCATGCAAGGTTCCCTTTATAGAAGTGCCATGGAATCC 780
consensus_8572#1 ------------------------------------------------------------
consensus_8572#0 AAGAAGCAATCTTACCTAGCAAATCTTGCCTTATATCCTGGAAGGACTGAACTACCATTC 840
consensus_8572#1 ------------------------------------------------------------
consensus_8572#0 TTGCCAGCTAACACGCAGGCCCTAATATTGCAACCAATTGGTGATAAAGGAATTGCAGTT 900
consensus_8572#1 -------------------------------GGTGGACCACCTATAAGGGGGTTCCACCT 29
* **** ** ** ** *
consensus_8572#0 ATTGGTGGTGACACTATAAGGGGGTTCACTAATCTTGATCAGGCATGGATTGCAATGATA 960
consensus_8572#1 ATATCCTGTG-TATTCCACGG----CCACTGGATT--GCCACATGATAGCCACGATTATA 82
** *** * * * ** **** * ** * ** ***
consensus_8572#0 GCAGATAAACTGGATGCTACATTGTCAAAGTCGTAAGAA--CGCGTAGTTTG-TTGGATA 1017
consensus_8572#1 G-ACCTGGGATGGCTACACTTGTCCACAAGTCGTGAAGATACGCGTAGNTTGGTTGGATA 141
* * * *** * * * ******* * * ******* *** *******
consensus_8572#0 TTGTTTGTATCTTGCAATTGGCC-AAACTGTCAC-GAGAGATGATCATCTGTCACTGTAC 1075
consensus_8572#1 TTGTTTGTATCTTGCCATTGGCCCAAACTGTCACCGAGAGATGATCATATGTCACTGTAC 201
*************** ******* ********** ************* ***********
consensus_8572#0 ATGTTCA-AGTTACAGGTAGAGTTTGCAAAA---CCAACGGATAAAACA-GTACAGGGCT 1130
consensus_8572#1 ATGTTCATAGTNACAGGTAGAGTTNGCCAAATACCNGACGGATATAACCCGTACAGG-CT 260
******* *** ************ ** *** * ******* *** ******* **
consensus_8572#0 GGGGTTGACCAATTGTTTTAAGCCAGGCTGTATGATTAGGCTTGATTAAGTTTGACCAGC 1190
consensus_8572#1 GGGGTTGACCCATNGTTTTAAGCCAGGCTGTATGATTAGGCTTGATTAAGTTTGACCAGC 320
********** ** **********************************************
consensus_8572#0 ATGAATTGATTACAATGTTAGTTACTTCTTGTAACCAGTCACTGTTGGCTGAATGAATCA 1250
consensus_8572#1 ATGAANTGATTNCCATGTTAAAAAAAAAA------------------------------- 349
***** ***** * ****** *
consensus_8572#0 CATTACTGATGCTTTCATTTGTAAGATCTCATCACATTTCAAAGAGTTTGC 1301
consensus_8572#1 ---------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||