cluster # 8573

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 8573 cluster # 8573 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8573#0 length = 490 sequences # 4

consensus_8573#1 length = 304 sequences # 1

consensusID : consensus_8573#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 490
fasta sequence

                              [NANANATNTTTCNCAGCTTCTCGTGATGGGGGCAGAAGAGGGGAGCAATCCG-CCGCCG-CCGCCGCCGCA-GG-GGCTCC-CGCCGCGA-GCCGCAGCCGATAACTCCGGCGGAGTTCCTCTCCTGGAAGCAGCGGAAGGATGCAGAGGAAGCTGCAAGGAAAGCTGAAGCAGCACAGAAGCGAGAGGCAGATATAGCTTCAGGAGCAGTACAAATGAATGGGCGAGAGCTGTTCAAGCATGAACCCTGGGTCTTTGACAATAGTATCTACTAAGACGAATGAACTCCGAGAAATTCACAACCATATGTGCTATATCTTCAATTGTGAAGTTCAACAGAGTAGTCTGCATGCAGAGGTAGTAGATATTGTTAGCTTAAGTGTATTTCATATTGTTAAGCATTGCACTTTAAGCTAAGCATACGATTT-GTTGTCTGTGTTACCGACTTGTGAATTCATATGATTCATATCTTTAAAAAAAATAAAAAAAAAAAAAA]

[+] EMBL AU082635             [NANANATNTTTCNCAGCTTCTCGTGATGGGGGCAGAAGAGGGGAGCAATCCG CCGCCG CCGCCGCCGCA G     TCCNNGCCGCGA GCCGCAGCCGATAACTCCGGCGGAGTTCCTCTCCTGGAAGCAGCGGAAGGATGCAGAGGAAGCTGCAAGGAAAGCTGAAGCAGCACAGAAGCGAGAGGCAGATATAGCTTCAGGAGCAGTACAAATGAATGGGCGAGA CTGTTCAAGCATGAACCCTGGGTCTTTGACAATAGTATCTACTAAGACGAATGAACTCCGAGAAATTCACAACCATATGTGCTATATCTTCAATTGTGAAGTTCAACAGAGTAGTCTGCATGCAGAGGTAGTAGATATTGTTAGCTTAAGTGTATTTCATATTGTTAAGCATTTCACTTTAAGCTAAGCATACGNTTT GTTGTCTGTGTTACCG CTTGT                                              ]
[+] EMBL AU093147             [               GCTTCTCGTGATGGGGGCAGAAGAGGGGAGCAATCCG CCGCCG CCGCCGCCGCA GGCGGCTCC CGCCGCGAGGCCGCAGCCGATAACTCCGGCGGAGTTCCTCTCCTGGAAGCAGCGGAAGGATGCAGAGGAAGCTGCAAGGAAAGCTGAAGCAGCACAGAAGCGAGAGGCAGATATAGCTTCAGGAGCAGTACAAATGAATGGGCGAGAGCTGTTCAAGCATGAACCCTGGGTCTTTGACAATAGTATCTACTAAGACGAATGAACTCCGAGAAATTCACAACCATATGTGCTATATCTTCAATTGTGAAGTTCAACAGAGTAGTCTGCATGCAGAGGTAGTAGATATTGTTAGCTTAAGTGTATTTCATATTGTTAAGCATTGCAC TTAAGCTAAGCATACGATTT GTTGTCTGTGTTACCGACTTGTGAATTCATATGATTCATATCTTTAAAAAAAA               ]
[+] EMBL C29044               [                CTTCTCGTGATGGGGGCAGAAGAGGGGAGCAATCCG CCGCCG CCGCCGCCGCA  G TNC CN CGCCGCGA GCCGCAGCCGATAACTCCGGCGGAGTTCCTCTCCTGGAAGCAGCGGAAGGATGCAGAGGAAGCTGCAAGGAAAGCTGAAGCAGCACAGAAGCGAGAGGCAGATATAGCTTCAGGAGCAGTACAAATGAATGGGCGAGAGCTGTTCAAGCATGAACCCTGGGTCTTTGACAATAGTATCTACTAAGACGAATGAACTCCGAGAAATTCACAACCATATGTGCTATATCTTCAATTGTGAAGTTCAACAGAGTAGTCTTCATGCAGAGGTAGTAGATATTGTTAGCTTAAGTGTATTTCATATTGTTAAGCATTNCACTTTAAGCTAAGCATACGATTTNGTTGTCTGTGTTA                                                       ]
[+] EMBL AU070865             [                            GGGNCAGAAGAGGGGAGCAATCCGCCCGCCGNCCGCCGCCGCAGGG GGCTCC CGCCGCGAGGCCGCANCCGATAACTCCGGCGGAGTTCCTCTCCTGGAAGCAGCGGAAGGATNCAGAGGAAGCTGCAAGGAAAGCTGAAGCAGCACAGAAGCGAGAGGCAGATATAGCTTCAGGAGCAGTACAAATGAATGGGCGAGAGCTGTTCAAGCATGANCCCTGGGTCTTTGACAATAGTATCTACTAAGACGAATGAACTCCGAGAAATTCACAACCATATGTGCTATATCTTCAATTGTGAAGTTCAACAGAGTAGTCTGCATGCAGAGGTAGTAGATATTGTTAGCTTAAGTGTATTTCATATTGTTAAGCATTGCAC TTAAGCTAAGCATACGATTT GTTGTCTGTGTTACCGACTTGTGAATTCATATGATTCATATCTTTATGACCTCTAAAAAAAAAAAAAA]




>consensus_8573#0
NANANATNTTTCNCAGCTTCTCGTGATGGGGGCAGAAGAGGGGAGCAATCCGCCGCCGCC
GCCGCCGCAGGGGCTCCCGCCGCGAGCCGCAGCCGATAACTCCGGCGGAGTTCCTCTCCT
GGAAGCAGCGGAAGGATGCAGAGGAAGCTGCAAGGAAAGCTGAAGCAGCACAGAAGCGAG
AGGCAGATATAGCTTCAGGAGCAGTACAAATGAATGGGCGAGAGCTGTTCAAGCATGAAC
CCTGGGTCTTTGACAATAGTATCTACTAAGACGAATGAACTCCGAGAAATTCACAACCAT
ATGTGCTATATCTTCAATTGTGAAGTTCAACAGAGTAGTCTGCATGCAGAGGTAGTAGAT
ATTGTTAGCTTAAGTGTATTTCATATTGTTAAGCATTGCACTTTAAGCTAAGCATACGAT
TTGTTGTCTGTGTTACCGACTTGTGAATTCATATGATTCATATCTTTAAAAAAAATAAAA
AAAAAAAAAA

consensusID : consensus_8573#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 304
fasta sequence

                              [GNGCAGTNCCAAATGAATGGGCGAGAGCTGTTCAAGCATGAACCCTGGGTCTTTGACAATAGTATCTACTAAGACGAATGAACTCCGAGAAATTCACAACCATATGTGCTATATCTTCAATTGTGAAGTTCAACAGAGTAGTCTGCATGCAGAGGTAGTAGATATTGTTAGCTTAAGTGTATTTCATATTGTTAAGCATTGCACTTAAGCTAAGCATACGATTTGTTGTCTGTGTTACCGACTTGTGAATTCATCCTNTTCATATCTTTATGACCTCTATGAAGGCATTCGGATTCCGTAAAAA]

[+] EMBL AU082636             [GNGCAGTNCCAAATGAATGGGCGAGAGCTGTTCAAGCATGAACCCTGGGTCTTTGACAATAGTATCTACTAAGACGAATGAACTCCGAGAAATTCACAACCATATGTGCTATATCTTCAATTGTGAAGTTCAACAGAGTAGTCTGCATGCAGAGGTAGTAGATATTGTTAGCTTAAGTGTATTTCATATTGTTAAGCATTGCACTTAAGCTAAGCATACGATTTGTTGTCTGTGTTACCGACTTGTGAATTCATCCTNTTCATATCTTTATGACCTCTATGAAGGCATTCGGATTCCGTAAAAA]




>consensus_8573#1
GNGCAGTNCCAAATGAATGGGCGAGAGCTGTTCAAGCATGAACCCTGGGTCTTTGACAAT
AGTATCTACTAAGACGAATGAACTCCGAGAAATTCACAACCATATGTGCTATATCTTCAA
TTGTGAAGTTCAACAGAGTAGTCTGCATGCAGAGGTAGTAGATATTGTTAGCTTAAGTGT
ATTTCATATTGTTAAGCATTGCACTTAAGCTAAGCATACGATTTGTTGTCTGTGTTACCG
ACTTGTGAATTCATCCTNTTCATATCTTTATGACCTCTATGAAGGCATTCGGATTCCGTA
AAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8573#0      NANANATNTTTCNCAGCTTCTCGTGATGGGGGCAGAAGAGGGGAGCAATCCGCCGCCGCC 60
consensus_8573#1      ------------------------------------------------------------
                                                                                  

consensus_8573#0      GCCGCCGCAGGGGCTCCCGCCGCGAGCCGCAGCCGATAACTCCGGCGGAGTTCCTCTCCT 120
consensus_8573#1      ------------------------------------------------------------
                                                                                  

consensus_8573#0      GGAAGCAGCGGAAGGATGCAGAGGAAGCTGCAAGGAAAGCTGAAGCAGCACAGAAGCGAG 180
consensus_8573#1      ------------------------------------------------------------
                                                                                  

consensus_8573#0      AGGCAGATATAGCTTCAGGAGCAGTAC-AAATGAATGGGCGAGAGCTGTTCAAGCATGAA 239
consensus_8573#1      ------------------GNGCAGTNCCAAATGAATGGGCGAGAGCTGTTCAAGCATGAA 42
                                        * ***** * ********************************

consensus_8573#0      CCCTGGGTCTTTGACAATAGTATCTACTAAGACGAATGAACTCCGAGAAATTCACAACCA 299
consensus_8573#1      CCCTGGGTCTTTGACAATAGTATCTACTAAGACGAATGAACTCCGAGAAATTCACAACCA 102
                      ************************************************************

consensus_8573#0      TATGTGCTATATCTTCAATTGTGAAGTTCAACAGAGTAGTCTGCATGCAGAGGTAGTAGA 359
consensus_8573#1      TATGTGCTATATCTTCAATTGTGAAGTTCAACAGAGTAGTCTGCATGCAGAGGTAGTAGA 162
                      ************************************************************

consensus_8573#0      TATTGTTAGCTTAAGTGTATTTCATATTGTTAAGCATTGCACTTTAAGCTAAGCATACGA 419
consensus_8573#1      TATTGTTAGCTTAAGTGTATTTCATATTGTTAAGCATTGCACTT-AAGCTAAGCATACGA 221
                      ******************************************** ***************

consensus_8573#0      TTTGTTGTCTGTGTTACCGACTTGTGAATTCATATGATTCATATCTTTAAAAAAAATAAA 479
consensus_8573#1      TTTGTTGTCTGTGTTACCGACTTGTGAATTCATCCTNTTCATATCTTTATGACCTCTATG 281
                      *********************************    ************  *    **  

consensus_8573#0      AAAAAAAAAAA------------ 490
consensus_8573#1      AAGGCATTCGGATTCCGTAAAAA 304
                      **   *