These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8575#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 412 fasta sequence [CCAGCTCTTGAAAAGTTCGTGTGGATACGTTGTGGCATTTGAAGGATGGCAATGGCTTCTGCTCTGACGAACTGTTGGGCTATTTCTCGTTCATCTCAGCGTGGATCCAAGAATAATAGTTCTGATGGTTCCTTCATGGTGCCAGCTCGGAACCACAATCGGATCAACAGAAAGCACCTCTTGCTCCGAGAAAAGGATGCTTCAACTGGTTGGCAGATCACCAAAGCTGGCAACAGAAAATTCCACCAATGNTGTTCACACCCCAATGTAGACTAAATGGTGGGAAAAAGAACATGAGATCCCTGCAACATGAAAAACATTGAATCACAAGACGGTTTTGACAAGCAGCTCCTGTTGGCCAGCGGTTAGGTCACCGTGGNGCACTTCTTTTTCCCCTAGGTTNTGGGGCTTT] [+] EMBL OSC402 [CCAGCTCTTGAAAAGTTCGTGTGGATACGTTGTGGCATTTGAAGGATGGCAATGGCTTCTGCTCTGACGAACTGTTGGGCTATTTCTCGTTCATCTCAGCGTGGATCCAAGAATAATAGTTCTGATGGTTCCTTCATGGTGCCAGCTCGGAACCACAATCGGATCAACAGAAAGCACCTCTTGCTCCGAGAAAAGGATGCTTCAACTGGTTGGCAGATCACCAAAGCTGGCAACAGAAAATTCCACCAATGNTGTTCACACCCCAATGTAGACTAAATGGTGGGAAAAAGAACATGAGATCCCTGCAACATGA ] [+] EMBL OSC337 [ AAAAGTTCGTGTGGATACGTTGTGGCATTTGAAGGATGGCAATGGCTTCTGCTCTGACGAACTGTTGGGCTATTTCTCGTTCATCTCAGCGTGGATCCAAGAATAATAGTTCTGATGGTTCCTTCATGGTGCCAGCTCGGAACCACAATCGGATCAACAGAAAGCACCTCTTGCTCCGAGAAAAGGATGCTTCAACTGGTTGGCAGATCACCAAAGCT GCAACAGAAAATTCCACCAATGCTGTTCACACCCCAATGAAGACTAAATGGTGGG AAAAGAACATGNAAT CCTGCAACATGNAAAACATTGAATCACAAGACGGTTTTGACAAGCAGCTCCTGTTGGCCAGCGGTTAGGTCACCGTGGNGCACTTCTTTTTCCCCTAGGTTNTGGGGCTTT] consensusID : consensus_8575#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 384 fasta sequence [AAAAAAAGAAGCAAAAGGGGCTCTGTTTTAGGGAGGATGAGGTATCCTTTGCTTCTGAAGCAACTTTTCTTCAGCTATAAATACCATACCATGGACCATTCCCATATCACCATCACAACATTTCCAGCTCTTGAAAAGTTCGTGTGGATACGTTGTGGCATTTGAAGGATGGCCATGGCTTCTGCTCTGACGAACTGTTGGGCTATTTCTCGTTCATCTCAGCGTGGATCCAAGAATAATAGTTCTGATGGTTCCTTCATGGTGCCAGCTCGGAACCACATCGGATCACAGAAAGCACCTCTTGCTCCGAGAAAAGGATGCTTCAACTGGTTGCAGATCACCAAGCTGCACAGAAAATTCCACCATGTAATTTCTTACACAAAA] [+] EMBL BI794862 [AAAAAAAGAAGCAAAAGGGGCTCTGTTTTAGGGAGGATGAGGTATCCTTTGCTTCTGAAGCAACTTTTCTTCAGCTATAAATACCATACCATGGACCATTCCCATATCACCATCACAACATTTCCAGCTCTTGAAAAGTTCGTGTGGATACGTTGTGGCATTTGAAGGATGGCCATGGCTTCTGCTCTGACGAACTGTTGGGCTATTTCTCGTTCATCTCAGCGTGGATCCAAGAATAATAGTTCTGATGGTTCCTTCATGGTGCCAGCTCGGAACCACATCGGATCACAGAAAGCACCTCTTGCTCCGAGAAAAGGATGCTTCAACTGGTTGCAGATCACCAAGCTGCACAGAAAATTCCACCATGTAATTTCTTACACAAAA] consensusID : consensus_8575#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 245 fasta sequence [CGAGGAAAAGAACATGAAATCCTGCAACATGAAAAACATTGAATCACAAGAAGATTTTGACAAGCAGCTCCTGTTGGCCAGCGATAAGCTCACCGTGGTGCACTTCTTTTCCCCTAGTTGTGGAGCTTGCAAGGCCCTACACCCTAAGGTATGTCAATTGGCTGGCATGCATCCGGAACTGCAGTTTCTTATGGTCAACTCCAATGAACAAAAGGAGATGTGCCGCAGTCAAAT-GTTCATGTATT] [+] EMBL AA752468 [CGAGGAAAAGAACATGAAATCCTGCAACATGAAAAACATTGAATCACAAGAAGATTTTGACAAGCAGCTCCTGTTGGCCAGCGATAAGCTCACCGTGGTGCACTTCTTTTCCCCTAGTTGTGGAGCTTGCAAGGCCCTACACCCTAAGGTATGTCAATTGGCTGGCATGCATCCGGAACTGCAGTTTCTTATGGTCAACTCCAATGAACAAAAGGAGATGTGCCGCAGTCAAAT GTTCATGTATT] [+] EMBL AA752459 [CGAGGAAAAGAACATGAAATCCTGCAACATGAAAAACATTGAATCACAAGAAGATTTTGACAAGCAGCTCCTGTTGGCCAGCGATAAGCTCACCGTGGTGCACTTCTTTTCCCCTAGTTGTGGAGCTTGCAAGGCCCTACACCCTAAGGTATGTCAATTGGCTGGCATGCATCCGGAACTGCAGTTTCTTATGGTCAACTCCAATGAACAAAAGGAGATGTGCCGCAGGCCAATGGTTCcaag ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8575#0 ------------------------------------------------------------ consensus_8575#1 AAAAAAAGAAGCAAAAGGGGCTCTGTTTTAGGGAGGATGAGGTATCCTTTGCTTCTGAAG 60 consensus_8575#2 ------------------------------------------------------------ consensus_8575#0 ------------------------------------------------------------ consensus_8575#1 CAACTTTTCTTCAGCTATAAATACCATACCATGGACCATTCCCATATCACCATCACAACA 120 consensus_8575#2 -----------------CGAGGAAAAGAACATGAAATCCTGCAACATGA-----AAAACA 38 consensus_8575#0 ---CCAGCTCTTGAAAAGTTCGTGTGGATACGTTGTGGCATTTGAAGGATGGCAATGGCT 57 consensus_8575#1 TTTCCAGCTCTTGAAAAGTTCGTGTGGATACGTTGTGGCATTTGAAGGATGGCCATGGCT 180 consensus_8575#2 TT---GAATCACAAGAAGATTTTGACAA------GCAGCTCCTGTTGGCCAGCGATAAGC 89 ** * *** * ** * * ** ** ** ** ** consensus_8575#0 TCTGCTCTGACGAACTGTTGGGCTATTTCTCGTTCATCTCAGCGTGGATCCAAGAATAAT 117 consensus_8575#1 TCTGCTCTGACGAACTGTTGGGCTATTTCTCGTTCATCTCAGCGTGGATCCAAGAATAAT 240 consensus_8575#2 TC-ACCGTGGTGCACTTCTTTTCCCCTAGTTGTGGAGCTT-GCAAGGCCCTACACCCTAA 147 ** * ** * *** * * * * ** * ** ** ** * * * consensus_8575#0 AGTTCTGATGGTTCCTTCATGGTGCCAGCTCGGAACCACAATCGGATCAACAGAAAGCAC 177 consensus_8575#1 AGTTCTGATGGTTCCTTCATGGTGCCAGCTCGGAACCACA-TCGGATCA-CAGAAAGCAC 298 consensus_8575#2 GGT----ATGTCAATTGGCTGGCATGCATCCGGAACTGCAGTTTC-TTA-TGGTCAAC-T 200 ** *** * *** ****** ** * * * * * * consensus_8575#0 CTCTTGCTCCGAGAAAAGGATGCTTCAACTGGTTGGCAGATCACCAAAGCTGGCAACAGA 237 consensus_8575#1 CTCTTGCTCCGAGAAAAGGATGCTTCAACTGGTTG-CAGATCACCAA-GCTG--CACAGA 354 consensus_8575#2 CCAATGAACAAAAGGAGATGTGCCGCAGTCAAATGTTCATGTATT--------------- 245 * ** * * * *** ** ** * consensus_8575#0 AAATTCCACCAATGNTGTTCACACCCCAATGTAGACTAAATGGTGGGAAAAAGAACATGA 297 consensus_8575#1 AAATTCCACCATGTAATTTCTTACACAAAA------------------------------ 384 consensus_8575#2 ------------------------------------------------------------ consensus_8575#0 GATCCCTGCAACATGAAAAACATTGAATCACAAGACGGTTTTGACAAGCAGCTCCTGTTG 357 consensus_8575#1 ------------------------------------------------------------ consensus_8575#2 ------------------------------------------------------------ consensus_8575#0 GCCAGCGGTTAGGTCACCGTGGNGCACTTCTTTTTCCCCTAGGTTNTGGGGCTTT 412 consensus_8575#1 ------------------------------------------------------- consensus_8575#2 ------------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||