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Oryza sativa
cluster # 8575 cluster # 8575       Sequences # 5       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8575#0 length = 412 sequences # 2  
consensus_8575#1 length = 384 sequences # 1  
consensus_8575#2 length = 245 sequences # 2  

consensusID : consensus_8575#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 412
fasta sequence
                              [CCAGCTCTTGAAAAGTTCGTGTGGATACGTTGTGGCATTTGAAGGATGGCAATGGCTTCTGCTCTGACGAACTGTTGGGCTATTTCTCGTTCATCTCAGCGTGGATCCAAGAATAATAGTTCTGATGGTTCCTTCATGGTGCCAGCTCGGAACCACAATCGGATCAACAGAAAGCACCTCTTGCTCCGAGAAAAGGATGCTTCAACTGGTTGGCAGATCACCAAAGCTGGCAACAGAAAATTCCACCAATGNTGTTCACACCCCAATGTAGACTAAATGGTGGGAAAAAGAACATGAGATCCCTGCAACATGAAAAACATTGAATCACAAGACGGTTTTGACAAGCAGCTCCTGTTGGCCAGCGGTTAGGTCACCGTGGNGCACTTCTTTTTCCCCTAGGTTNTGGGGCTTT]

[+] EMBL OSC402               [CCAGCTCTTGAAAAGTTCGTGTGGATACGTTGTGGCATTTGAAGGATGGCAATGGCTTCTGCTCTGACGAACTGTTGGGCTATTTCTCGTTCATCTCAGCGTGGATCCAAGAATAATAGTTCTGATGGTTCCTTCATGGTGCCAGCTCGGAACCACAATCGGATCAACAGAAAGCACCTCTTGCTCCGAGAAAAGGATGCTTCAACTGGTTGGCAGATCACCAAAGCTGGCAACAGAAAATTCCACCAATGNTGTTCACACCCCAATGTAGACTAAATGGTGGGAAAAAGAACATGAGATCCCTGCAACATGA                                                                                                   ]
[+] EMBL OSC337               [          AAAAGTTCGTGTGGATACGTTGTGGCATTTGAAGGATGGCAATGGCTTCTGCTCTGACGAACTGTTGGGCTATTTCTCGTTCATCTCAGCGTGGATCCAAGAATAATAGTTCTGATGGTTCCTTCATGGTGCCAGCTCGGAACCACAATCGGATCAACAGAAAGCACCTCTTGCTCCGAGAAAAGGATGCTTCAACTGGTTGGCAGATCACCAAAGCT GCAACAGAAAATTCCACCAATGCTGTTCACACCCCAATGAAGACTAAATGGTGGG AAAAGAACATGNAAT CCTGCAACATGNAAAACATTGAATCACAAGACGGTTTTGACAAGCAGCTCCTGTTGGCCAGCGGTTAGGTCACCGTGGNGCACTTCTTTTTCCCCTAGGTTNTGGGGCTTT]


>consensus_8575#0 CCAGCTCTTGAAAAGTTCGTGTGGATACGTTGTGGCATTTGAAGGATGGCAATGGCTTCT GCTCTGACGAACTGTTGGGCTATTTCTCGTTCATCTCAGCGTGGATCCAAGAATAATAGT TCTGATGGTTCCTTCATGGTGCCAGCTCGGAACCACAATCGGATCAACAGAAAGCACCTC TTGCTCCGAGAAAAGGATGCTTCAACTGGTTGGCAGATCACCAAAGCTGGCAACAGAAAA TTCCACCAATGNTGTTCACACCCCAATGTAGACTAAATGGTGGGAAAAAGAACATGAGAT CCCTGCAACATGAAAAACATTGAATCACAAGACGGTTTTGACAAGCAGCTCCTGTTGGCC AGCGGTTAGGTCACCGTGGNGCACTTCTTTTTCCCCTAGGTTNTGGGGCTTT



consensusID : consensus_8575#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 384
fasta sequence
                              [AAAAAAAGAAGCAAAAGGGGCTCTGTTTTAGGGAGGATGAGGTATCCTTTGCTTCTGAAGCAACTTTTCTTCAGCTATAAATACCATACCATGGACCATTCCCATATCACCATCACAACATTTCCAGCTCTTGAAAAGTTCGTGTGGATACGTTGTGGCATTTGAAGGATGGCCATGGCTTCTGCTCTGACGAACTGTTGGGCTATTTCTCGTTCATCTCAGCGTGGATCCAAGAATAATAGTTCTGATGGTTCCTTCATGGTGCCAGCTCGGAACCACATCGGATCACAGAAAGCACCTCTTGCTCCGAGAAAAGGATGCTTCAACTGGTTGCAGATCACCAAGCTGCACAGAAAATTCCACCATGTAATTTCTTACACAAAA]

[+] EMBL BI794862             [AAAAAAAGAAGCAAAAGGGGCTCTGTTTTAGGGAGGATGAGGTATCCTTTGCTTCTGAAGCAACTTTTCTTCAGCTATAAATACCATACCATGGACCATTCCCATATCACCATCACAACATTTCCAGCTCTTGAAAAGTTCGTGTGGATACGTTGTGGCATTTGAAGGATGGCCATGGCTTCTGCTCTGACGAACTGTTGGGCTATTTCTCGTTCATCTCAGCGTGGATCCAAGAATAATAGTTCTGATGGTTCCTTCATGGTGCCAGCTCGGAACCACATCGGATCACAGAAAGCACCTCTTGCTCCGAGAAAAGGATGCTTCAACTGGTTGCAGATCACCAAGCTGCACAGAAAATTCCACCATGTAATTTCTTACACAAAA]


>consensus_8575#1 AAAAAAAGAAGCAAAAGGGGCTCTGTTTTAGGGAGGATGAGGTATCCTTTGCTTCTGAAG CAACTTTTCTTCAGCTATAAATACCATACCATGGACCATTCCCATATCACCATCACAACA TTTCCAGCTCTTGAAAAGTTCGTGTGGATACGTTGTGGCATTTGAAGGATGGCCATGGCT TCTGCTCTGACGAACTGTTGGGCTATTTCTCGTTCATCTCAGCGTGGATCCAAGAATAAT AGTTCTGATGGTTCCTTCATGGTGCCAGCTCGGAACCACATCGGATCACAGAAAGCACCT CTTGCTCCGAGAAAAGGATGCTTCAACTGGTTGCAGATCACCAAGCTGCACAGAAAATTC CACCATGTAATTTCTTACACAAAA



consensusID : consensus_8575#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 245
fasta sequence
                              [CGAGGAAAAGAACATGAAATCCTGCAACATGAAAAACATTGAATCACAAGAAGATTTTGACAAGCAGCTCCTGTTGGCCAGCGATAAGCTCACCGTGGTGCACTTCTTTTCCCCTAGTTGTGGAGCTTGCAAGGCCCTACACCCTAAGGTATGTCAATTGGCTGGCATGCATCCGGAACTGCAGTTTCTTATGGTCAACTCCAATGAACAAAAGGAGATGTGCCGCAGTCAAAT-GTTCATGTATT]

[+] EMBL AA752468             [CGAGGAAAAGAACATGAAATCCTGCAACATGAAAAACATTGAATCACAAGAAGATTTTGACAAGCAGCTCCTGTTGGCCAGCGATAAGCTCACCGTGGTGCACTTCTTTTCCCCTAGTTGTGGAGCTTGCAAGGCCCTACACCCTAAGGTATGTCAATTGGCTGGCATGCATCCGGAACTGCAGTTTCTTATGGTCAACTCCAATGAACAAAAGGAGATGTGCCGCAGTCAAAT GTTCATGTATT]
[+] EMBL AA752459             [CGAGGAAAAGAACATGAAATCCTGCAACATGAAAAACATTGAATCACAAGAAGATTTTGACAAGCAGCTCCTGTTGGCCAGCGATAAGCTCACCGTGGTGCACTTCTTTTCCCCTAGTTGTGGAGCTTGCAAGGCCCTACACCCTAAGGTATGTCAATTGGCTGGCATGCATCCGGAACTGCAGTTTCTTATGGTCAACTCCAATGAACAAAAGGAGATGTGCCGCAGGCCAATGGTTCcaag   ]


>consensus_8575#2 CGAGGAAAAGAACATGAAATCCTGCAACATGAAAAACATTGAATCACAAGAAGATTTTGA CAAGCAGCTCCTGTTGGCCAGCGATAAGCTCACCGTGGTGCACTTCTTTTCCCCTAGTTG TGGAGCTTGCAAGGCCCTACACCCTAAGGTATGTCAATTGGCTGGCATGCATCCGGAACT GCAGTTTCTTATGGTCAACTCCAATGAACAAAAGGAGATGTGCCGCAGTCAAATGTTCAT GTATT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8575#0      ------------------------------------------------------------
consensus_8575#1      AAAAAAAGAAGCAAAAGGGGCTCTGTTTTAGGGAGGATGAGGTATCCTTTGCTTCTGAAG 60
consensus_8575#2      ------------------------------------------------------------
                                                                                  

consensus_8575#0      ------------------------------------------------------------
consensus_8575#1      CAACTTTTCTTCAGCTATAAATACCATACCATGGACCATTCCCATATCACCATCACAACA 120
consensus_8575#2      -----------------CGAGGAAAAGAACATGAAATCCTGCAACATGA-----AAAACA 38
                                                                                  

consensus_8575#0      ---CCAGCTCTTGAAAAGTTCGTGTGGATACGTTGTGGCATTTGAAGGATGGCAATGGCT 57
consensus_8575#1      TTTCCAGCTCTTGAAAAGTTCGTGTGGATACGTTGTGGCATTTGAAGGATGGCCATGGCT 180
consensus_8575#2      TT---GAATCACAAGAAGATTTTGACAA------GCAGCTCCTGTTGGCCAGCGATAAGC 89
                              **   * *** *  **   *      *  **   **  **   ** **    

consensus_8575#0      TCTGCTCTGACGAACTGTTGGGCTATTTCTCGTTCATCTCAGCGTGGATCCAAGAATAAT 117
consensus_8575#1      TCTGCTCTGACGAACTGTTGGGCTATTTCTCGTTCATCTCAGCGTGGATCCAAGAATAAT 240
consensus_8575#2      TC-ACCGTGGTGCACTTCTTTTCCCCTAGTTGTGGAGCTT-GCAAGGCCCTACACCCTAA 147
                      **  *  **  * ***  *   *   *  * **  * **  **  **  * *      * 

consensus_8575#0      AGTTCTGATGGTTCCTTCATGGTGCCAGCTCGGAACCACAATCGGATCAACAGAAAGCAC 177
consensus_8575#1      AGTTCTGATGGTTCCTTCATGGTGCCAGCTCGGAACCACA-TCGGATCA-CAGAAAGCAC 298
consensus_8575#2      GGT----ATGTCAATTGGCTGGCATGCATCCGGAACTGCAGTTTC-TTA-TGGTCAAC-T 200
                       **    ***     *   ***        ******  ** *    * *   *  * *  

consensus_8575#0      CTCTTGCTCCGAGAAAAGGATGCTTCAACTGGTTGGCAGATCACCAAAGCTGGCAACAGA 237
consensus_8575#1      CTCTTGCTCCGAGAAAAGGATGCTTCAACTGGTTG-CAGATCACCAA-GCTG--CACAGA 354
consensus_8575#2      CCAATGAACAAAAGGAGATGTGCCGCAGTCAAATGTTCATGTATT--------------- 245
                      *   **  *  *   *    ***  **      **       *                 

consensus_8575#0      AAATTCCACCAATGNTGTTCACACCCCAATGTAGACTAAATGGTGGGAAAAAGAACATGA 297
consensus_8575#1      AAATTCCACCATGTAATTTCTTACACAAAA------------------------------ 384
consensus_8575#2      ------------------------------------------------------------
                                                                                  

consensus_8575#0      GATCCCTGCAACATGAAAAACATTGAATCACAAGACGGTTTTGACAAGCAGCTCCTGTTG 357
consensus_8575#1      ------------------------------------------------------------
consensus_8575#2      ------------------------------------------------------------
                                                                                  

consensus_8575#0      GCCAGCGGTTAGGTCACCGTGGNGCACTTCTTTTTCCCCTAGGTTNTGGGGCTTT 412
consensus_8575#1      -------------------------------------------------------
consensus_8575#2      -------------------------------------------------------
                                                                             




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)