cluster # 8575

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 8575 cluster # 8575 Sequences # 5 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8575#0 length = 412 sequences # 2

consensus_8575#1 length = 384 sequences # 1
consensus_8575#2 length = 245 sequences # 2

consensusID : consensus_8575#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 412
fasta sequence

                              [CCAGCTCTTGAAAAGTTCGTGTGGATACGTTGTGGCATTTGAAGGATGGCAATGGCTTCTGCTCTGACGAACTGTTGGGCTATTTCTCGTTCATCTCAGCGTGGATCCAAGAATAATAGTTCTGATGGTTCCTTCATGGTGCCAGCTCGGAACCACAATCGGATCAACAGAAAGCACCTCTTGCTCCGAGAAAAGGATGCTTCAACTGGTTGGCAGATCACCAAAGCTGGCAACAGAAAATTCCACCAATGNTGTTCACACCCCAATGTAGACTAAATGGTGGGAAAAAGAACATGAGATCCCTGCAACATGAAAAACATTGAATCACAAGACGGTTTTGACAAGCAGCTCCTGTTGGCCAGCGGTTAGGTCACCGTGGNGCACTTCTTTTTCCCCTAGGTTNTGGGGCTTT]

[+] EMBL OSC402               [CCAGCTCTTGAAAAGTTCGTGTGGATACGTTGTGGCATTTGAAGGATGGCAATGGCTTCTGCTCTGACGAACTGTTGGGCTATTTCTCGTTCATCTCAGCGTGGATCCAAGAATAATAGTTCTGATGGTTCCTTCATGGTGCCAGCTCGGAACCACAATCGGATCAACAGAAAGCACCTCTTGCTCCGAGAAAAGGATGCTTCAACTGGTTGGCAGATCACCAAAGCTGGCAACAGAAAATTCCACCAATGNTGTTCACACCCCAATGTAGACTAAATGGTGGGAAAAAGAACATGAGATCCCTGCAACATGA                                                                                                   ]
[+] EMBL OSC337               [          AAAAGTTCGTGTGGATACGTTGTGGCATTTGAAGGATGGCAATGGCTTCTGCTCTGACGAACTGTTGGGCTATTTCTCGTTCATCTCAGCGTGGATCCAAGAATAATAGTTCTGATGGTTCCTTCATGGTGCCAGCTCGGAACCACAATCGGATCAACAGAAAGCACCTCTTGCTCCGAGAAAAGGATGCTTCAACTGGTTGGCAGATCACCAAAGCT GCAACAGAAAATTCCACCAATGCTGTTCACACCCCAATGAAGACTAAATGGTGGG AAAAGAACATGNAAT CCTGCAACATGNAAAACATTGAATCACAAGACGGTTTTGACAAGCAGCTCCTGTTGGCCAGCGGTTAGGTCACCGTGGNGCACTTCTTTTTCCCCTAGGTTNTGGGGCTTT]




>consensus_8575#0
CCAGCTCTTGAAAAGTTCGTGTGGATACGTTGTGGCATTTGAAGGATGGCAATGGCTTCT
GCTCTGACGAACTGTTGGGCTATTTCTCGTTCATCTCAGCGTGGATCCAAGAATAATAGT
TCTGATGGTTCCTTCATGGTGCCAGCTCGGAACCACAATCGGATCAACAGAAAGCACCTC
TTGCTCCGAGAAAAGGATGCTTCAACTGGTTGGCAGATCACCAAAGCTGGCAACAGAAAA
TTCCACCAATGNTGTTCACACCCCAATGTAGACTAAATGGTGGGAAAAAGAACATGAGAT
CCCTGCAACATGAAAAACATTGAATCACAAGACGGTTTTGACAAGCAGCTCCTGTTGGCC
AGCGGTTAGGTCACCGTGGNGCACTTCTTTTTCCCCTAGGTTNTGGGGCTTT

consensusID : consensus_8575#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 384
fasta sequence

                              [AAAAAAAGAAGCAAAAGGGGCTCTGTTTTAGGGAGGATGAGGTATCCTTTGCTTCTGAAGCAACTTTTCTTCAGCTATAAATACCATACCATGGACCATTCCCATATCACCATCACAACATTTCCAGCTCTTGAAAAGTTCGTGTGGATACGTTGTGGCATTTGAAGGATGGCCATGGCTTCTGCTCTGACGAACTGTTGGGCTATTTCTCGTTCATCTCAGCGTGGATCCAAGAATAATAGTTCTGATGGTTCCTTCATGGTGCCAGCTCGGAACCACATCGGATCACAGAAAGCACCTCTTGCTCCGAGAAAAGGATGCTTCAACTGGTTGCAGATCACCAAGCTGCACAGAAAATTCCACCATGTAATTTCTTACACAAAA]

[+] EMBL BI794862             [AAAAAAAGAAGCAAAAGGGGCTCTGTTTTAGGGAGGATGAGGTATCCTTTGCTTCTGAAGCAACTTTTCTTCAGCTATAAATACCATACCATGGACCATTCCCATATCACCATCACAACATTTCCAGCTCTTGAAAAGTTCGTGTGGATACGTTGTGGCATTTGAAGGATGGCCATGGCTTCTGCTCTGACGAACTGTTGGGCTATTTCTCGTTCATCTCAGCGTGGATCCAAGAATAATAGTTCTGATGGTTCCTTCATGGTGCCAGCTCGGAACCACATCGGATCACAGAAAGCACCTCTTGCTCCGAGAAAAGGATGCTTCAACTGGTTGCAGATCACCAAGCTGCACAGAAAATTCCACCATGTAATTTCTTACACAAAA]




>consensus_8575#1
AAAAAAAGAAGCAAAAGGGGCTCTGTTTTAGGGAGGATGAGGTATCCTTTGCTTCTGAAG
CAACTTTTCTTCAGCTATAAATACCATACCATGGACCATTCCCATATCACCATCACAACA
TTTCCAGCTCTTGAAAAGTTCGTGTGGATACGTTGTGGCATTTGAAGGATGGCCATGGCT
TCTGCTCTGACGAACTGTTGGGCTATTTCTCGTTCATCTCAGCGTGGATCCAAGAATAAT
AGTTCTGATGGTTCCTTCATGGTGCCAGCTCGGAACCACATCGGATCACAGAAAGCACCT
CTTGCTCCGAGAAAAGGATGCTTCAACTGGTTGCAGATCACCAAGCTGCACAGAAAATTC
CACCATGTAATTTCTTACACAAAA

consensusID : consensus_8575#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 245
fasta sequence

                              [CGAGGAAAAGAACATGAAATCCTGCAACATGAAAAACATTGAATCACAAGAAGATTTTGACAAGCAGCTCCTGTTGGCCAGCGATAAGCTCACCGTGGTGCACTTCTTTTCCCCTAGTTGTGGAGCTTGCAAGGCCCTACACCCTAAGGTATGTCAATTGGCTGGCATGCATCCGGAACTGCAGTTTCTTATGGTCAACTCCAATGAACAAAAGGAGATGTGCCGCAGTCAAAT-GTTCATGTATT]

[+] EMBL AA752468             [CGAGGAAAAGAACATGAAATCCTGCAACATGAAAAACATTGAATCACAAGAAGATTTTGACAAGCAGCTCCTGTTGGCCAGCGATAAGCTCACCGTGGTGCACTTCTTTTCCCCTAGTTGTGGAGCTTGCAAGGCCCTACACCCTAAGGTATGTCAATTGGCTGGCATGCATCCGGAACTGCAGTTTCTTATGGTCAACTCCAATGAACAAAAGGAGATGTGCCGCAGTCAAAT GTTCATGTATT]
[+] EMBL AA752459             [CGAGGAAAAGAACATGAAATCCTGCAACATGAAAAACATTGAATCACAAGAAGATTTTGACAAGCAGCTCCTGTTGGCCAGCGATAAGCTCACCGTGGTGCACTTCTTTTCCCCTAGTTGTGGAGCTTGCAAGGCCCTACACCCTAAGGTATGTCAATTGGCTGGCATGCATCCGGAACTGCAGTTTCTTATGGTCAACTCCAATGAACAAAAGGAGATGTGCCGCAGGCCAATGGTTCcaag   ]




>consensus_8575#2
CGAGGAAAAGAACATGAAATCCTGCAACATGAAAAACATTGAATCACAAGAAGATTTTGA
CAAGCAGCTCCTGTTGGCCAGCGATAAGCTCACCGTGGTGCACTTCTTTTCCCCTAGTTG
TGGAGCTTGCAAGGCCCTACACCCTAAGGTATGTCAATTGGCTGGCATGCATCCGGAACT
GCAGTTTCTTATGGTCAACTCCAATGAACAAAAGGAGATGTGCCGCAGTCAAATGTTCAT
GTATT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8575#0      ------------------------------------------------------------
consensus_8575#1      AAAAAAAGAAGCAAAAGGGGCTCTGTTTTAGGGAGGATGAGGTATCCTTTGCTTCTGAAG 60
consensus_8575#2      ------------------------------------------------------------
                                                                                  

consensus_8575#0      ------------------------------------------------------------
consensus_8575#1      CAACTTTTCTTCAGCTATAAATACCATACCATGGACCATTCCCATATCACCATCACAACA 120
consensus_8575#2      -----------------CGAGGAAAAGAACATGAAATCCTGCAACATGA-----AAAACA 38
                                                                                  

consensus_8575#0      ---CCAGCTCTTGAAAAGTTCGTGTGGATACGTTGTGGCATTTGAAGGATGGCAATGGCT 57
consensus_8575#1      TTTCCAGCTCTTGAAAAGTTCGTGTGGATACGTTGTGGCATTTGAAGGATGGCCATGGCT 180
consensus_8575#2      TT---GAATCACAAGAAGATTTTGACAA------GCAGCTCCTGTTGGCCAGCGATAAGC 89
                              **   * *** *  **   *      *  **   **  **   ** **    

consensus_8575#0      TCTGCTCTGACGAACTGTTGGGCTATTTCTCGTTCATCTCAGCGTGGATCCAAGAATAAT 117
consensus_8575#1      TCTGCTCTGACGAACTGTTGGGCTATTTCTCGTTCATCTCAGCGTGGATCCAAGAATAAT 240
consensus_8575#2      TC-ACCGTGGTGCACTTCTTTTCCCCTAGTTGTGGAGCTT-GCAAGGCCCTACACCCTAA 147
                      **  *  **  * ***  *   *   *  * **  * **  **  **  * *      * 

consensus_8575#0      AGTTCTGATGGTTCCTTCATGGTGCCAGCTCGGAACCACAATCGGATCAACAGAAAGCAC 177
consensus_8575#1      AGTTCTGATGGTTCCTTCATGGTGCCAGCTCGGAACCACA-TCGGATCA-CAGAAAGCAC 298
consensus_8575#2      GGT----ATGTCAATTGGCTGGCATGCATCCGGAACTGCAGTTTC-TTA-TGGTCAAC-T 200
                       **    ***     *   ***        ******  ** *    * *   *  * *  

consensus_8575#0      CTCTTGCTCCGAGAAAAGGATGCTTCAACTGGTTGGCAGATCACCAAAGCTGGCAACAGA 237
consensus_8575#1      CTCTTGCTCCGAGAAAAGGATGCTTCAACTGGTTG-CAGATCACCAA-GCTG--CACAGA 354
consensus_8575#2      CCAATGAACAAAAGGAGATGTGCCGCAGTCAAATGTTCATGTATT--------------- 245
                      *   **  *  *   *    ***  **      **       *                 

consensus_8575#0      AAATTCCACCAATGNTGTTCACACCCCAATGTAGACTAAATGGTGGGAAAAAGAACATGA 297
consensus_8575#1      AAATTCCACCATGTAATTTCTTACACAAAA------------------------------ 384
consensus_8575#2      ------------------------------------------------------------
                                                                                  

consensus_8575#0      GATCCCTGCAACATGAAAAACATTGAATCACAAGACGGTTTTGACAAGCAGCTCCTGTTG 357
consensus_8575#1      ------------------------------------------------------------
consensus_8575#2      ------------------------------------------------------------
                                                                                  

consensus_8575#0      GCCAGCGGTTAGGTCACCGTGGNGCACTTCTTTTTCCCCTAGGTTNTGGGGCTTT 412
consensus_8575#1      -------------------------------------------------------
consensus_8575#2      -------------------------------------------------------