These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_858#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1325 fasta sequence [TCACTAAATGCTGGGGATCGGATATGAGAGCAACCATGGATTAAGATCCTAGGCTAACCGAACGTGCCGGAGGTATATTTACCATGCTACCCCTAAAGGGAATGCCCGTAGTGCAGCGATTTCCTGATGTGTTCCCAGAAGATTTACCTGGAATGCCACCAGATCGTGACATAGAGTTCATTATTGACCTGATACCCGGAACTGCCCCCATATCCAAGAGACCATATCGGATGCCGGTCAATGAGTTAGAAGAACTTAAAAAGCAAATTAGGGAGTTGCAAGAAAAGGGATTTGTACGCCCCAGTTCGTCACCTTGGGGAGCCCCAGTGCTATTCGTCAAGAAGAAAGATGGTAGCATGAGAATGTGTGTGGACTACCGCTCACTGAACGAAGTAACTATCAAAAACAAGTATCCACTACCACGGATTGATGATCTCTTCGATCAACTTAAGGGAGCTAAGGTGTTTTCAAAGATTGACCTTCGGTCAGGATGCCACCAATTGAAAATTAGAACCGGGGACATACCCAAAACCGCGTTCTCAACACGCTATGGGTCATATGAGTTCACCGTAATGTCGTTTGGTTTAACCAACGCTCCGGCATACTTTATGAATCTTATGAACAAAGTGTTCATGGACTACTTGGACAAATTTGTGGTGGTATTCATCGATGATATTTTAATCTACTCCAAAGATGAGGAAGAACATGCGGAACACTTGCGATTGGTACTCGAGAAACTTCGGAAGCATAAGTTATATGCAAAATTCAGCAAGTGTGAGTTCTGGTTAAAAGAAGTCGCTTTTCTAGGCCACGTAATCTCGGCCGGTGGAGTAGCAGTGGATCCTGCTAAAGTGGAGGCTGTCACGGAATGGAAAGCACCCAAATCTGTGACTGAAATTCGGAGTTTTCTAGGCTTGGCTAGATACTACCGAAGGTTCATTGAAGGGTTCTCTAAGATAGCCCGACCAATGACACAACTACTCAAGAAGGAAAAGAAGTTTGTGTGGTCAGAGCAGTGTCAGGAAAGCTTTGAGCAGCTCAAAGAAAAGCTGACCTCGGCGCCTATTTTAGTTCTTCCCGACATCAGGAAAGACTTTGTTATATATTGTGATGCTTCAAGGCAAGGACTAGGAGGAGTACTGATGCAGGACGGAAAAGTTGTGGCCTATGCGTCGCGACAATTGCGACCACATGAGGAGAACTACCCTACCCATGACCTAGAACTCGCAGCTGTGGTTCATGCGCTAAAGATTTGGAGACATTATCTGATTGGAAACCATTGCGATATCTACACTGACCACAAGAGTCTGAAGTATATCTTCACC] [+] EMBL AB021952 [TCACTAAATGCTGGGGATCGGATATGAGAGCAACCATGGATTAAGATCCTAGGCTAACCGAACGTGCCGGAGGTATATTTACCATGCTACCCCTAAAGGGAATGCCCGTAGTGCAGCGATTTCCTGATGTGTTCCCAGAAGATTTACCTGGAATGCCACCAGATCGTGACATAGAGTTCATTATTGACCTGATACCCGGAACTGCCCCCATATCCAAGAGACCATATCGGATGCCGGTCAATGAGTTAGAAGAACTTAAAAAGCAAATTAGGGAGTTGCAAGAAAAGGGATTTGTACGCCCCAGTTCGTCACCTTGGGGAGCCCCAGTGCTATTCGTCAAGAAGAAAGATGGTAGCATGAGAATGTGTGTGGACTACCGCTCACTGAACGAAGTAACTATCAAAAACAAGTATCCACTACCACGGATTGATGATCTCTTCGATCAACTTAAGGGAGCTAAGGTGTTTTCAAAGATTGACCTTCGGTCAGGATGCCACCAATTGAAAATTAGAACCGGGGACATACCCAAAACCGCGTTCTCAACACGCTATGGGTCATATGAGTTCACCGTAATGTCGTTTGGTTTAACCAACGCTCCGGCATACTTTATGAATCTTATGAACAAAGTGTTCATGGACTACTTGGACAAATTTGTGGTGGTATTCATCGATGATATTTTAATCTACTCCAAAGATGAGGAAGAACATGCGGAACACTTGCGATTGGTACTCGAGAAACTTCGGAAGCATAAGTTATATGCAAAATTCAGCAAGTGTGAGTTCTGGTTAAAAGAAGTCGCTTTTCTAGGCCACGTAATCTCGGCCGGTGGAGTAGCAGTGGATCCTGCTAAAGTGGAGGCTGTCACGGAATGGAAAGCACCCAAATCTGTGACTGAAATTCGGAGTTTTCTAGGCTTGGCTAGATACTACCGAAGGTTCATTGAAGGGTTCTCTAAGATAGCCCGACCAATGACACAACTACTCAAGAAGGAAAAGAAGTTTGTGTGGTCAGAGCAGTGTCAGGAAAGCTTTGAGCAGCTCAAAGAAAAGCTGACCTCGGCGCCTATTTTAGTTCTTCCCGACATCAGGAAAGACTTTGTTATATATTGTGATGCTTCAAGGCAAGGACTAGGAGGAGTACTGATGCAGGACGGAAAAGTTGTGGCCTATGCGTCGCGACAATTGCGACCACATGAGGAGAACTACCCTACCCATGACCTAGAACTCGCAGCTGTGGTTCATGCGCTAAAGATTTGGAGACATTATCTGATTGGAAACCATTGCGATATCTACACTGACCACAAGAGTCTGAAGTATATCTTCACC] consensusID : consensus_858#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1155 fasta sequence [AACGTTATTATTGATGATTCTGTATATTAAATTGTCAGTTTGTGTACCTCGGCTGATTCCTGGACGAGGGTTTTATGCACAAATTAGTTTGGAAATTACTAGTGAATTTCTGGGCGTGACAACCAGGGCGTATTGATGGGTATGTTTTCTATCAACTCCACTCCAGTTAAAGTTCTCTTCGATTCAGGAGCATCGTATTCATTTATATCTTTGAAAGCAAGCCAACAACACAATTTGACCAGAGTTAAACTAAGGCAACCAATGTTAGTACATTCACCTGGGGGTGAAATAGCCGTGGATACAGCTTGCATTGACGTACCCATTCGCCTTAGGGATGTGGTATTTCCCTCCAACCTTATGGTGCTGATGCCTCAGACCCTTGATGTCATATTGGGTATGGATTGGTTAACAAAGAATAGAGGAGTAATCGACTGTAGACGTAGAGAAGTTACCCTGACCACACCCTGGGGATCGGATATGAGAGCAACCATGGATCAAGATCCTAGACTAACTGAACGTGCCGGAGGCATATTTACCATGCTACCCCTGAAAGGAATGCCCGTAGTGTAGCGATTCCCCGATGTGTTCCCAGAAGATTTACCTGGAATGCCACTAGATCGTGACATAGAGTTCACTATTGACCTGATACCCGGGACTACCCCCATATCCAAGAGACCATATCGGATGCCGGTCAATGAGTTCGAGGAACTTAAAAAGCAAATCAGAGAGTTGCAAGAGAAGGGATTTGTACGTCCTAGTTCGTCACCTTGGGGCGCCCCAGTGTTATTCGTCAAGAAGAAGGATGGTAGCATGAGAATGTGTGTGGACTACCGCTCACTGAACGAAGTCACTATCAAAAACAAGTATCCATTACCACGAATTGATGATCTTTTTGATCAACTCAAAGGAGCTAAGGTGTTCTCTAAGATTGACCTTCGATCAGGATACCACCAATTGAAAATTAGGATCGGGGATATACCCAAGACCGCGTTCTCAACGCGCTATGGATTGTATGAGTTCACAGTAATGTCGTTTGGATTAACCAACGCCCCGGCATACTTTATGAATCTTATGAACAAAGTGTTCATGGATTACTTGGGCAAATTTGTGGTAGTATTCATCGATGATATCTTAATCTACTCCAAAGACGAGGAA] [-] EMBL AK062744 [AACGTTATTATTGATGATTCTGTATATTAAATTGTCAGTTTGTGTACCTCGGCTGATTCCTGGACGAGGGTTTTATGCACAAATTAGTTTGGAAATTACTAGTGAATTTCTGGGCGTGACAACCAGGGCGTATTGATGGGTATGTTTTCTATCAACTCCACTCCAGTTAAAGTTCTCTTCGATTCAGGAGCATCGTATTCATTTATATCTTTGAAAGCAAGCCAACAACACAATTTGACCAGAGTTAAACTAAGGCAACCAATGTTAGTACATTCACCTGGGGGTGAAATAGCCGTGGATACAGCTTGCATTGACGTACCCATTCGCCTTAGGGATGTGGTATTTCCCTCCAACCTTATGGTGCTGATGCCTCAGACCCTTGATGTCATATTGGGTATGGATTGGTTAACAAAGAATAGAGGAGTAATCGACTGTAGACGTAGAGAAGTTACCCTGACCACACCCTGGGGATCGGATATGAGAGCAACCATGGATCAAGATCCTAGACTAACTGAACGTGCCGGAGGCATATTTACCATGCTACCCCTGAAAGGAATGCCCGTAGTGTAGCGATTCCCCGATGTGTTCCCAGAAGATTTACCTGGAATGCCACTAGATCGTGACATAGAGTTCACTATTGACCTGATACCCGGGACTACCCCCATATCCAAGAGACCATATCGGATGCCGGTCAATGAGTTCGAGGAACTTAAAAAGCAAATCAGAGAGTTGCAAGAGAAGGGATTTGTACGTCCTAGTTCGTCACCTTGGGGCGCCCCAGTGTTATTCGTCAAGAAGAAGGATGGTAGCATGAGAATGTGTGTGGACTACCGCTCACTGAACGAAGTCACTATCAAAAACAAGTATCCATTACCACGAATTGATGATCTTTTTGATCAACTCAAAGGAGCTAAGGTGTTCTCTAAGATTGACCTTCGATCAGGATACCACCAATTGAAAATTAGGATCGGGGATATACCCAAGACCGCGTTCTCAACGCGCTATGGATTGTATGAGTTCACAGTAATGTCGTTTGGATTAACCAACGCCCCGGCATACTTTATGAATCTTATGAACAAAGTGTTCATGGATTACTTGGGCAAATTTGTGGTAGTATTCATCGATGATATCTTAATCTACTCCAAAGACGAGGAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_858#0 ------------------------------------------------------------ consensus_858#1 AACGTTATTATTGATGATTCTGTATATTAAATTGTCAGTTTGTGTACCTCGGCTGATTCC 60 consensus_858#0 ------------------------------------------------------------ consensus_858#1 TGGACGAGGGTTTTATGCACAAATTAGTTTGGAAATTACTAGTGAATTTCTGGGCGTGAC 120 consensus_858#0 ------------------------------------------------------------ consensus_858#1 AACCAGGGCGTATTGATGGGTATGTTTTCTATCAACTCCACTCCAGTTAAAGTTCTCTTC 180 consensus_858#0 ------------------------------------------------------------ consensus_858#1 GATTCAGGAGCATCGTATTCATTTATATCTTTGAAAGCAAGCCAACAACACAATTTGACC 240 consensus_858#0 ------------------------------------------------------------ consensus_858#1 AGAGTTAAACTAAGGCAACCAATGTTAGTACATTCACCTGGGGGTGAAATAGCCGTGGAT 300 consensus_858#0 ------------------------------------------------------------ consensus_858#1 ACAGCTTGCATTGACGTACCCATTCGCCTTAGGGATGTGGTATTTCCCTCCAACCTTATG 360 consensus_858#0 ------------------------------------------------------------ consensus_858#1 GTGCTGATGCCTCAGACCCTTGATGTCATATTGGGTATGGATTGGTTAACAAAGAATAGA 420 consensus_858#0 ----------------------------------TCACTAAATGCTGGGGATCGGATATG 26 consensus_858#1 GGAGTAATCGACTGTAGACGTAGAGAAGTTACCCTGACCACACCCTGGGGATCGGATATG 480 * ** * * **************** consensus_858#0 AGAGCAACCATGGATTAAGATCCTAGGCTAACCGAACGTGCCGGAGGTATATTTACCATG 86 consensus_858#1 AGAGCAACCATGGATCAAGATCCTAGACTAACTGAACGTGCCGGAGGCATATTTACCATG 540 *************** ********** ***** ************** ************ consensus_858#0 CTACCCCTAAAGGGAATGCCCGTAGTGCAGCGATTTCCTGATGTGTTCCCAGAAGATTTA 146 consensus_858#1 CTACCCCTGAAAGGAATGCCCGTAGTGTAGCGATTCCCCGATGTGTTCCCAGAAGATTTA 600 ******** ** *************** ******* ** ********************* consensus_858#0 CCTGGAATGCCACCAGATCGTGACATAGAGTTCATTATTGACCTGATACCCGGAACTGCC 206 consensus_858#1 CCTGGAATGCCACTAGATCGTGACATAGAGTTCACTATTGACCTGATACCCGGGACTACC 660 ************* ******************** ****************** *** ** consensus_858#0 CCCATATCCAAGAGACCATATCGGATGCCGGTCAATGAGTTAGAAGAACTTAAAAAGCAA 266 consensus_858#1 CCCATATCCAAGAGACCATATCGGATGCCGGTCAATGAGTTCGAGGAACTTAAAAAGCAA 720 ***************************************** ** *************** consensus_858#0 ATTAGGGAGTTGCAAGAAAAGGGATTTGTACGCCCCAGTTCGTCACCTTGGGGAGCCCCA 326 consensus_858#1 ATCAGAGAGTTGCAAGAGAAGGGATTTGTACGTCCTAGTTCGTCACCTTGGGGCGCCCCA 780 ** ** *********** ************** ** ***************** ****** consensus_858#0 GTGCTATTCGTCAAGAAGAAAGATGGTAGCATGAGAATGTGTGTGGACTACCGCTCACTG 386 consensus_858#1 GTGTTATTCGTCAAGAAGAAGGATGGTAGCATGAGAATGTGTGTGGACTACCGCTCACTG 840 *** **************** *************************************** consensus_858#0 AACGAAGTAACTATCAAAAACAAGTATCCACTACCACGGATTGATGATCTCTTCGATCAA 446 consensus_858#1 AACGAAGTCACTATCAAAAACAAGTATCCATTACCACGAATTGATGATCTTTTTGATCAA 900 ******** ********************* ******* *********** ** ****** consensus_858#0 CTTAAGGGAGCTAAGGTGTTTTCAAAGATTGACCTTCGGTCAGGATGCCACCAATTGAAA 506 consensus_858#1 CTCAAAGGAGCTAAGGTGTTCTCTAAGATTGACCTTCGATCAGGATACCACCAATTGAAA 960 ** ** ************** ** ************** ******* ************* consensus_858#0 ATTAGAACCGGGGACATACCCAAAACCGCGTTCTCAACACGCTATGGGTCATATGAGTTC 566 consensus_858#1 ATTAGGATCGGGGATATACCCAAGACCGCGTTCTCAACGCGCTATGGATTGTATGAGTTC 1020 ***** * ****** ******** ************** ******** * ********* consensus_858#0 ACCGTAATGTCGTTTGGTTTAACCAACGCTCCGGCATACTTTATGAATCTTATGAACAAA 626 consensus_858#1 ACAGTAATGTCGTTTGGATTAACCAACGCCCCGGCATACTTTATGAATCTTATGAACAAA 1080 ** ************** *********** ****************************** consensus_858#0 GTGTTCATGGACTACTTGGACAAATTTGTGGTGGTATTCATCGATGATATTTTAATCTAC 686 consensus_858#1 GTGTTCATGGATTACTTGGGCAAATTTGTGGTAGTATTCATCGATGATATCTTAATCTAC 1140 *********** ******* ************ ***************** ********* consensus_858#0 TCCAAAGATGAGGAAGAACATGCGGAACACTTGCGATTGGTACTCGAGAAACTTCGGAAG 746 consensus_858#1 TCCAAAGACGAGGAA--------------------------------------------- 1155 ******** ****** consensus_858#0 CATAAGTTATATGCAAAATTCAGCAAGTGTGAGTTCTGGTTAAAAGAAGTCGCTTTTCTA 806 consensus_858#1 ------------------------------------------------------------ consensus_858#0 GGCCACGTAATCTCGGCCGGTGGAGTAGCAGTGGATCCTGCTAAAGTGGAGGCTGTCACG 866 consensus_858#1 ------------------------------------------------------------ consensus_858#0 GAATGGAAAGCACCCAAATCTGTGACTGAAATTCGGAGTTTTCTAGGCTTGGCTAGATAC 926 consensus_858#1 ------------------------------------------------------------ consensus_858#0 TACCGAAGGTTCATTGAAGGGTTCTCTAAGATAGCCCGACCAATGACACAACTACTCAAG 986 consensus_858#1 ------------------------------------------------------------ consensus_858#0 AAGGAAAAGAAGTTTGTGTGGTCAGAGCAGTGTCAGGAAAGCTTTGAGCAGCTCAAAGAA 1046 consensus_858#1 ------------------------------------------------------------ consensus_858#0 AAGCTGACCTCGGCGCCTATTTTAGTTCTTCCCGACATCAGGAAAGACTTTGTTATATAT 1106 consensus_858#1 ------------------------------------------------------------ consensus_858#0 TGTGATGCTTCAAGGCAAGGACTAGGAGGAGTACTGATGCAGGACGGAAAAGTTGTGGCC 1166 consensus_858#1 ------------------------------------------------------------ consensus_858#0 TATGCGTCGCGACAATTGCGACCACATGAGGAGAACTACCCTACCCATGACCTAGAACTC 1226 consensus_858#1 ------------------------------------------------------------ consensus_858#0 GCAGCTGTGGTTCATGCGCTAAAGATTTGGAGACATTATCTGATTGGAAACCATTGCGAT 1286 consensus_858#1 ------------------------------------------------------------ consensus_858#0 ATCTACACTGACCACAAGAGTCTGAAGTATATCTTCACC 1325 consensus_858#1 --------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||