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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8585#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1599 fasta sequence
[GCCAACATCTGCCGAGGAAGAACAACCGCAATGCTCTACCCCTATTGCATTATCTCCTTGGGATGAAACAAGTGACTATCAAGGTGAAGCTGTTGATTCTGCTCTATGGGGTGTCCAAGATGACCAAAACAATGAAATGTGGTCATTGTCTTCACCAACACCTACTCTCCAACCTTCAGGTATTGGAGCTGATACCAAAGGTGCTTCCTGTGCTATAGAAGAGGTGATAGTAGCCCAAGGAAATAGTGGTGTTGTTGAACCGTCACCAGCACTGGAGAAGAAAAGGATTGAAAAAGTACCAAGTGCTTCCATAGATCGTGGAGTACCAGAGCAGGTAAAACCAAAATCAGATGCTGCATTATCTCCAGAAGAGAGCAGAAAACCTTCAGGTTTGCAACTATCAAGCACATATCTACAAGGGAGCACAAAATCTTCAGGTTTGCCACCGTCAGGCACATCTCTAGATGGGGGCATAGAACCTTCAGGTTTGCTACCTTCAGGAACTTCTTTGGAGTGGGGTACAAAAATTTCAGGTGTGCAATCCTCGGCCTCATCTCTAGAGGGGAGCAAAAAGGCTTTTGTTAGGCAACCATCAGGCTCTTCACTAGAGGGAAACACAAAAGCGTCAGGTAGGCAGCCGTCAGGTTCATCTATAGAGGGGAGTAAGAAACCTTCTGATAGGCAGCCATCAGGTGCATCTCAAGAGGGGAATACAAAGCCTTCAGGCTGGCAACAATCTGTGTCGTCTCTTGAAGGTGGCACGAAACCTTCAGGCTGGAAACCTTCAATTTCTATAGACACGAATACAAAAGCTTCAGGTTGGCTGCGATCGAGCTCATCTCCTGATGTGGGCAGAAAAGCTTCAGCATGGCAATCATCAGGTTCTTCGCCTGTTGCAGGGAGCTCAAAAGCATCAGGTTGGCAGCCATCACCTCGCGAGAGCTCGAAATCTAAGCCTAATTCCACATGGGGTGCCGGCCAAAGCCGCAACTCGTCTTCGCACCAATCAACAACACCAACAGCTAAATACTCATCAGAAACCCCAAGGAGACAAGGAAACAACAACACAAATTCTGCTGGCTGGGGAGACTCTCTCGGAAACAAGAGCTGGCATTCACCCTCAGGCAATGCGAGCAGCCGAGGCAGCCATTCTAGCCACCACCATGACCGGCACAATCAGAGCAGCGAACCATGGCGTGGTGGCTCAAATCATTCCAGGAGATCAGATCATCGTCAAGAACATGGCAACGGTGGCTCGTCGAGATCATCGTCGTCGAGGGGGCAATCTCAAAGGGGGATCTGTAGATACTACGAGAATGGCTACTGCAGGAAGGGCACTTCCTGCCAGTTCCTCCACCGTTGAAAACGCCCTCACATTTTTGTACAGCCCTAAATGATTTCTCACTCACTCCGTAGTCAGCACAGAAGTGACCTTTATTTAACCTTCTCGGCACCACTCAGCTGTTAGTAAGTATATACATATCCATCAGCACAGGAGTATGATTAAGTTAGCATTTTATGCTTGGAAAAACAGCCACTGATGTGCGGCCACGACTGTAGATCCTTCTCTTTAGGTGAATGATGCATTTTGATTGATCC]
[+] EMBL AK060521 [GCCAACATCTGCCGAGGAAGAACAACCGCAATGCTCTACCCCTATTGCATTATCTCCTTGGGATGAAACAAGTGACTATCAAGGTGAAGCTGTTGATTCTGCTCTATGGGGTGTCCAAGATGACCAAAACAATGAAATGTGGTCATTGTCTTCACCAACACCTACTCTCCAACCTTCAGGTATTGGAGCTGATACCAAAGGTGCTTCCTGTGCTATAGAAGAGGTGATAGTAGCCCAAGGAAATAGTGGTGTTGTTGAACCGTCACCAGCACTGGAGAAGAAAAGGATTGAAAAAGTACCAAGTGCTTCCATAGATCGTGGAGTACCAGAGCAGGTAAAACCAAAATCAGATGCTGCATTATCTCCAGAAGAGAGCAGAAAACCTTCAGGTTTGCAACTATCAAGCACATATCTACAAGGGAGCACAAAATCTTCAGGTTTGCCACCGTCAGGCACATCTCTAGATGGGGGCATAGAACCTTCAGGTTTGCTACCTTCAGGAACTTCTTTGGAGTGGGGTACAAAAATTTCAGGTGTGCAATCCTCGGCCTCATCTCTAGAGGGGAGCAAAAAGGCTTTTGTTAGGCAACCATCAGGCTCTTCACTAGAGGGAAACACAAAAGCGTCAGGTAGGCAGCCGTCAGGTTCATCTATAGAGGGGAGTAAGAAACCTTCTGATAGGCAGCCATCAGGTGCATCTCAAGAGGGGAATACAAAGCCTTCAGGCTGGCAACAATCTGTGTCGTCTCTTGAAGGTGGCACGAAACCTTCAGGCTGGAAACCTTCAATTTCTATAGACACGAATACAAAAGCTTCAGGTTGGCTGCGATCGAGCTCATCTCCTGATGTGGGCAGAAAAGCTTCAGCATGGCAATCATCAGGTTCTTCGCCTGTTGCAGGGAGCTCAAAAGCATCAGGTTGGCAGCCATCACCTCGCGAGAGCTCGAAATCTAAGCCTAATTCCACATGGGGTGCCGGCCAAAGCCGCAACTCGTCTTCGCACCAATCAACAACACCAACAGCTAAATACTCATCAGAAACCCCAAGGAGACAAGGAAACAACAACACAAATTCTGCTGGCTGGGGAGACTCTCTCGGAAACAAGAGCTGGCATTCACCCTCAGGCAATGCGAGCAGCCGAGGCAGCCATTCTAGCCACCACCATGACCGGCACAATCAGAGCAGCGAACCATGGCGTGGTGGCTCAAATCATTCCAGGAGATCAGATCATCGTCAAGAACATGGCAACGGTGGCTCGTCGAGATCATCGTCGTCGAGGGGGCAATCTCAAAGGGGGATCTGTAGATACTACGAGAATGGCTACTGCAGGAAGGGCACTTCCTGCCAGTTCCTCCACCGTTGAAAACGCCCTCACATTTTTGTACAGCCCTAAATGATTTCTCACTCACTCCGTAGTCAGCACAGAAGTGACCTTTATTTAACCTTCTCGGCACCACTCAGCTGTTAGTAAGTATATACATATCCATCAGCACAGGAGTATGATTAAGTTAGCATTTTATGCTTGGAAAAACAGCCACTGATGTGCGGCCACGACTGTAGATCCTTCTCTTTAGGTGAATGATGCATTTTGATTGATCC]
[+] EMBL AF140485 [ GTCTTCGCACCAATCAACAACACCAACAGCTAAATACTCATCAGAAACCCCAAGGAGACAAGGAAACAACAACACAAATTCTGCTGGCTGGGGAGACTCTCTCGGAAACAAGAGCTGGCATTCACCCTCAGGCAATGCGAGCAGCCGAGGCAGCCATTCTAGCCACCACCATGACCGGCACAATCAGAGCAGCGAACCATGGCGTGGTGGCTCAAATCATTCCAGGAGATCAGATCATCGTCAAGAACATGGCAACGGTGGCTCGTCGAGATCATCGTCGTCGAGGGGGCAATCTCAAAGGGGGATCTGTAGATACTACGAGAATGGCTACTGCAGGAAGGGCACTTCCTGCCAGTTCCTCCACCGTTGAAAACGCCCTC ]
[+] EMBL AA752314 [ AACACCAACAGCTAAATACTCATCAGAAACCCC AGGAGACAAGGAGACAACAACACAAATTCTGCTGGCTGGGGAGACTCTCTCGGAAACACGAGCTGGCATTCACCCTCAGGCAATGCGAGCAGCCGAGGCAGCCATTCTAGCCACCACCATGACCGGCACATTCAGAGCAGCGAACCATGG ]
consensusID : consensus_8585#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 679 fasta sequence
[CGGCCGCCGGGCGGCGCCGCGCGAGTCTCACTCCCCGTCTCGATCCACTCATCCGGCCTACGTCTCGCCTCAGCCGGCCCGCCGAGCCCACGCACGCCGCGGCCCGCGTGCGAAGCAGCCGCCGCCGAACGCGCCTCCGCCGGCCGCGGCGCCCGCCGCGCAGGCACCGATCGCCCGCGCCCCCACTCGGCCCCCACCGCGCTCTAAGGCGGACCGCTGAGAGCCGATGAGAGGCCGCCCCGCGCGACCGGATTAGATTCTTTTTTGCTCTCCCAAAAAAAAAACCCCAGGGGNCAACCCGGTGGGCTCTGTCCGAGATCATTGTTGTCGAGGGGGCAATCTCAAAGGGGGATCTGTAGATACTACGAGAATGGCTACTGCAGGAAGGGCACTTCCTGCCAGTTCCTCCACCGTTGAAAACGCCCTCGCATTTTTGTACAGCCCTAAATGATTTCTCACTCACTCCGTAGTCAGCACAGAAGTGACCTTTATTTAACCTTCTGGGCACCACTCAGCTGTTAGTAAGTATATACATATCCATCAGCACAGGAGTATGATTAAGTTAGCATTTTATGCTTGGAAAAACAGCCACTGATGTACGGCCCCGACTGTAGATCCTTCTCTTTAGGTGAATGATGCATTTTGATTGATCCTGTTAGGTTTAGTGGAAAAAAAAAAA]
[-] EMBL CA763316 [CGGCCGCCGGGCGGCGCCGCGCGAGTCTCACTCCCCGTCTCGATCCACTCATCCGGCCTACGTCTCGCCTCAGCCGGCCCGCCGAGCCCACGCACGCCGCGGCCCGCGTGCGAAGCAGCCGCCGCCGAACGCGCCTCCGCCGGCCGCGGCGCCCGCCGCGCAGGCACCGATCGCCCGCGCCCCCACTCGGCCCCCACCGCGCTCTAAGGCGGACCGCTGAGAGCCGATGAGAGGCCGCCCCGCGCGACCGGATTAGATTCTTTTTTGCTCTCCCAAAAAAAAAACCCCAGGGGNCAACCCGGTGGGCTCTGTCCGAGATCATTGTTGTCGAGGGGGCAATCTCAAAGGGGGATCTGTAGATACTACGAGAATGGCTACTGCAGGAAGGGCACTTCCTGCCAGTTCCTCCACCGTTGAAAACGCCCTCGCATTTTTGTACAGCCCTAAATGATTTCTCACTCACTCCGTAGTCAGCACAGAAGTGACCTTTATTTAACCTTCTGGGCACCACTCAGCTGTTAGTAAGTATATACATATCCATCAGCACAGGAGTATGATTAAGTTAGCATTTTATGCTTGGAAAAACAGCCACTGATGTACGGCCCCGACTGTAGATCCTTCTCTTTAGGTGAATGATGCATTTTGATTGATCCTGTTAGGTTTAGTGGAAAAAAAAAAA]
[-] EMBL CA763317 [CGGCCGCCGGGCGGCGCCGCGCGAGTCTCACTCCCCGTCTCGATCCACTCATCCGGCCTACGTCTCGCCTCAGCCGGCCCGCCGAGCCCACGCACGCCGCGGCCCGCGTGCGAAGCAGCCGCCGCCGAACGCGCCTCCGCCGGCCGCGGCGCCCGCCGCGCAGGCACCGATCGCCCGCGCCCCCACTCGGCCCCCACCGCGCTCTAAGGCGGACCGCTGAGAGCCGATGAGAGGCCGCCCCGCGCGACCGGATTAGATTCTTTTTTGCTCTCCCAAAAAAAAAACCCCAGGGGNCAACCCGGTGGGCTCTGTCCGAGATCATTGTTGTCGAGGGGGCAATCTCAAAGGGGGATCTGTAGATACTACGAGAATGGCTACTGCAGGAAGGGCACTTCCTGCCAGTTCCTCCACCGTTGAAAACGCCCTCGCATTTTTGTACAGCCCTAAATGATTTCTCACTCACTCCGTAGTCAGCACAGAAGTGACCTTTATTTAACCTTCTGGGCACCACTCAGCTGTTAGTAAGTATATACATATCCATCAGCACAGGAGTATGATTAAGTTAGCATTTTATGCTTGGAAAAACAGCCACTGATGTACGGCCCCGACTGTAGATCCTTCTCTTTAGGTGAATGATGCATTTTGATTGATCCTGTTAGGTTTAGTGGAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8585#0 GCCAACATCTGCCGAGGAAGAACAACCGCAATGCTCTACCCCTATTGCATTATCTCCTTG 60
consensus_8585#1 ------------------------------------------------------------
consensus_8585#0 GGATGAAACAAGTGACTATCAAGGTGAAGCTGTTGATTCTGCTCTATGGGGTGTCCAAGA 120
consensus_8585#1 ------------------------------------------------------------
consensus_8585#0 TGACCAAAACAATGAAATGTGGTCATTGTCTTCACCAACACCTACTCTCCAACCTTCAGG 180
consensus_8585#1 ------------------------------------------------------------
consensus_8585#0 TATTGGAGCTGATACCAAAGGTGCTTCCTGTGCTATAGAAGAGGTGATAGTAGCCCAAGG 240
consensus_8585#1 ------------------------------------------------------------
consensus_8585#0 AAATAGTGGTGTTGTTGAACCGTCACCAGCACTGGAGAAGAAAAGGATTGAAAAAGTACC 300
consensus_8585#1 ------------------------------------------------------------
consensus_8585#0 AAGTGCTTCCATAGATCGTGGAGTACCAGAGCAGGTAAAACCAAAATCAGATGCTGCATT 360
consensus_8585#1 ------------------------------------------------------------
consensus_8585#0 ATCTCCAGAAGAGAGCAGAAAACCTTCAGGTTTGCAACTATCAAGCACATATCTACAAGG 420
consensus_8585#1 ------------------------------------------------------------
consensus_8585#0 GAGCACAAAATCTTCAGGTTTGCCACCGTCAGGCACATCTCTAGATGGGGGCATAGAACC 480
consensus_8585#1 ------------------------------------------------------------
consensus_8585#0 TTCAGGTTTGCTACCTTCAGGAACTTCTTTGGAGTGGGGTACAAAAATTTCAGGTGTGCA 540
consensus_8585#1 ------------------------------------------------------------
consensus_8585#0 ATCCTCGGCCTCATCTCTAGAGGGGAGCAAAAAGGCTTTTGTTAGGCAACCATCAGGCTC 600
consensus_8585#1 ------------------------------------------------------------
consensus_8585#0 TTCACTAGAGGGAAACACAAAAGCGTCAGGTAGGCAGCCGTCAGGTTCATCTATAGAGGG 660
consensus_8585#1 ------------------------------------------------------------
consensus_8585#0 GAGTAAGAAACCTTCTGATAGGCAGCCATCAGGTGCATCTCAAGAGGGGAATACAAAGCC 720
consensus_8585#1 ------------------------------------------------------------
consensus_8585#0 TTCAGGCTGGCAACAATCTGTGTCGTCTCTTGAAGGTGGCACGAAACCTTCAGGCTGGAA 780
consensus_8585#1 ------------------------------------------------------------
consensus_8585#0 ACCTTCAATTTCTATAGACACGAATACAAAAGCTTCAGGTTGGCTGCGATCGAGCTCATC 840
consensus_8585#1 ------------------------------------------------------------
consensus_8585#0 TCCTGATGTGGGCAGAAAAGCTTCAGCATGGCAATCATCAGGTTCTTCGCCTGTTGCAGG 900
consensus_8585#1 ------------------------------------------------------------
consensus_8585#0 GAGCTCAAAAGCATCAGGTTGGCAGCCATCACCTCGCGAGAGCTCGAAATCTAAGCCTAA 960
consensus_8585#1 ---------------CGGCCGCCGGGCGGCGCCGCGCGAG---TCTCACTCCCCGTCTCG 42
** * * * * * ** ****** ** * ** * **
consensus_8585#0 TTCCACATGGGGTGCCGGCCAAAGCCGCAACTCGTCTTCGCACCAATCAACAACACCAAC 1020
consensus_8585#1 ATCCACTCAT----CCGGCCTACGTC-----------TCGCCTCAGCCGGC----CCGCC 83
***** ****** * * * **** ** * * ** *
consensus_8585#0 AGCTAAATACTCATCAGAAACCCCAAGGAGACAAGGAAACAACAACACAAATTCTGCTGG 1080
consensus_8585#1 GAGCCCACGCACGCCGCGGCCCGCGTGCGAAGCAGCCGCCGCCGAACGCGCCTCCGCCGG 143
* * * * ** * * * ** * * * ** ** **
consensus_8585#0 CTGGGGAGACTCTCTCGGAAACA---AGAGCTGGCATTCACCCTCAGGCAATGCGAGCAG 1137
consensus_8585#1 CCGCGGCGCCCGCCGCGCAGGCACCGATCGCCCGCGCCCCCACTCGGCCCCCACCGCGCT 203
* * ** * * * ** * ** * ** ** * * *** * * *
consensus_8585#0 CCGAGGCAGCCATTCTAGCCACCACCATGACCGGCACAATCAGAGCAGCGAACCATGGCG 1197
consensus_8585#1 CTAAGGCGGAC-CGCTGAGAGCCG--ATGAGAGGC-CGCCCCGCGCG----ACCGGATTA 255
* **** * * ** ** **** *** * * * ** ***
consensus_8585#0 TGGTGGCTCAAATCATTCCAGGAGATCAGATCATCGTCAAGAACATGGCAACGGTGGCTC 1257
consensus_8585#1 GATTCTTTTTTGCTCTCCCAAAA----AAAAAACCCCAGGGGNCAACCCGGTGGGCTCTG 311
* * * *** * * * * * * ** * ** **
consensus_8585#0 GTCGAGATCATCGTCGTCGAGGGGGCAATCTCAAAGGGGGATCTGTAGATACTACGAGAA 1317
consensus_8585#1 TCCGAGATCATTGTTGTCGAGGGGGCAATCTCAAAGGGGGATCTGTAGATACTACGAGAA 371
********* ** *********************************************
consensus_8585#0 TGGCTACTGCAGGAAGGGCACTTCCTGCCAGTTCCTCCACCGTTGAAAACGCCCTCACAT 1377
consensus_8585#1 TGGCTACTGCAGGAAGGGCACTTCCTGCCAGTTCCTCCACCGTTGAAAACGCCCTCGCAT 431
******************************************************** ***
consensus_8585#0 TTTTGTACAGCCCTAAATGATTTCTCACTCACTCCGTAGTCAGCACAGAAGTGACCTTTA 1437
consensus_8585#1 TTTTGTACAGCCCTAAATGATTTCTCACTCACTCCGTAGTCAGCACAGAAGTGACCTTTA 491
************************************************************
consensus_8585#0 TTTAACCTTCTCGGCACCACTCAGCTGTTAGTAAGTATATACATATCCATCAGCACAGGA 1497
consensus_8585#1 TTTAACCTTCTGGGCACCACTCAGCTGTTAGTAAGTATATACATATCCATCAGCACAGGA 551
*********** ************************************************
consensus_8585#0 GTATGATTAAGTTAGCATTTTATGCTTGGAAAAACAGCCACTGATGTGCGGCCACGACTG 1557
consensus_8585#1 GTATGATTAAGTTAGCATTTTATGCTTGGAAAAACAGCCACTGATGTACGGCCCCGACTG 611
*********************************************** ***** ******
consensus_8585#0 TAGATCCTTCTCTTTAGGTGAATGATGCATTTTGATTGATCC------------------ 1599
consensus_8585#1 TAGATCCTTCTCTTTAGGTGAATGATGCATTTTGATTGATCCTGTTAGGTTTAGTGGAAA 671
******************************************
consensus_8585#0 --------
consensus_8585#1 AAAAAAAA 679
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||