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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8586#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 682 fasta sequence
[AGCAGAACCCTAGGTGGCGGCGGTGGTATCCCGTTCGCGGTGGCGGCGGCACATCCATAGCTGCCGACGGCAGCAT-CCCGTTCGCGGCTGCGGCGGCACATCCGTAGCTACCGACGGCGGCATCCCGTTCGCGGCGGCGGCGGCGCATCCGTAGCTGCCGACGGCGGCA-ACCCGTTCGCGGCGGCGGCGGCGCA-TCCTTGGTTCTCTGGGAAGAGCTATCGGTTTGCCTTTCTCCCCTTCGCGGCGGCGCCTCATCCATTCCTCTCGACACCGCCTTTTTCCCCTTGTCCAAATCGTCGCGGGACTTCGATGCATGCGTGCGTGCGTGTTCGGCCATGGATGAGTGAAGCTTACAATTTCGGGAAAGTACAAGAAGATGTTTGAGATGGATATGAAGTACAAGCACACAATTTGTTCTGGACGTTTGATAAATTTGTCATGCTCTTGTCCGTTCCTGTAGTATTGGAGGCATGTTATAATGGAGTCATTGGACTGGTATCAATCTTGGCGTGTTTTCCTGTAATATTACGNTTTCCAGCTGGGTTTTGGTATTGGTTACTTCTGGAATTGGAGAGATGAG-TTGATGACATGGCGGCA-CTGAAATTTATATTTCTGTATGTTTTATGGTACATGCAATGCTTGGTGATTTCTGGAATTGAAGATATGATGGATGTATTGCAAT]
[+] EMBL CA754404 [AGCAGAACCCTAGGTGGCGGCGGTGGTATCCCGTTCGCGGTGGCGGCGGCACATCCATAGCTGCCGACGGCAGCAT CCCGTTCGCGGCTGCGGCGGCACATCCGTAGCTACCGACGGCGGCATCCCGTTCGCGGCGGCGGCGGCGCATCCGTAGCTGCCGACGGCGGCN ACCCGTTCGCGGCGGCGGCGGCGCA TCCTTGGTTCTCTGGGAAGAGCTATCGGTTTGCCTTTCTCCCCTTCGCGGCGGCGCCTCATCCATTCCTCTCGACACCGCCTTTTTCCCCTTGTCCAAATCGTCGCGGGACTTCGATGCATGCGTGCGTGCGTGTTCGGCCATGGATGAGTGAAGCTTACAATTTCGGGAAAGTACAAGAAGATGTTTGAGATGGATATGAAGTACAAGCACACAATTTGTTCTGGACGTTTGATAAATTTGTCATGCTCTTGTCCGTTCCTGTAGTATTGGAGGCATGTTATAATGGAGTCATTGGACTGGTATCAATCTTGGCGTGTTTTCCTGTAATATTACGNTTTCCAGCTGGGTTTTGGTATTGGTTACTTCTGGAATTGGAGAGATGAG TTGATGACATGGCGGCA CTGAAA ]
[+] EMBL AU081345 [ GTGGCGGCGGTGGTATCCCGTTCGCGGTGGCGGCGGCACATCCATAGCTGCCGACGGAA ATNCCCGTTCGCGGCTGCGGCGGCACATCCGTAGCTACCGACGGCGGCATCCCGTTCGCGGCGGCGGCGGCGCATCCGTAGCTGCCGACGG GGCA ACCCGTTCGCGGCGGCGGCGGCGCA TCCTTGGTTCTCTGGGAAGAGCTATCGGTTTGCCTTTCTCCCCTTCGCGGCGGCGCCTCATCCATTCCTCTCGACACCGCCTTTTTCCCCTTGTCCAAATCGTCGCGGGACTTCGATGCATGCGTGCGTGCGTGTTCGGCCATGGATGAGTGAAGCTTACAATTTCGGGAAAGTACAAGAAGATGTTTGAGATGGATATGAAGTACAAG ACAC ]
[+] EMBL AK105329 [ GTTCGCGGTGGCGGCGGCACATCCATAGCTGCCGACGGCAGCAT CCCGTTCGCGGCTGCGGCGGCACATCCGTAGCTACCGACGGCGGCATCCCGTTCGCGGCGGCGGCGGCGCATCCGTAGCTGCCGACGGCGGCA ACCCGTTCGCGGCGGCGGCGGCGCA TCCTTGGTTCTCTGGGAAGAGCTATCGGTTTGCCTTTCTCCCCTTCGCGGCGGCGCCTCATCCATTCCTCTCGACACCGCCTTTTTCCCCTTGTCCAAATCGTCGCGGGACTTCGATGCATGCGTGCGTGCGTGTTCGGCCATGGATGAGTGAAGCTTACAATTTCGGGAAAGTACAAGAAGATGTTTGAGATGGATATGAAGTACAAGCACACAATTTGTTCTGGACGTTTGATAAATTTGTCATGCTCTTGTCCGTTCCTGTAGTATTGGAGGCATTTTATAATGGAGTCATTGGACTGTAATCAATCTTGGTGTGTTTTCCTGTAATATTACGTTTTCAAGCTGTGTTTTGGTATTGGTTACTTCTGGAATTGAAGAGATGAGTTTAATGACATGGTTGCAGCT AGTTTTATATTTCTGTATGTTTTATGGTACATGCAATGCTTGGTGATTTCTGGAATTGAAGATATGATGGATGTATTGCAAT]
[+] EMBL AU063698 [ GGTGGC GCGGCACATCCATAGCTGCCGACG ANTNC CCTGTTCGCGGCTG NGCGGCACATCCGTAGCTACCGACGGCGGCATCCCGTTCGCGGCGGC GCGGCGCATCCGTAGCTGCCGAC GNGGCANACCCGTTCGCGGCGGC GCGGCGCANTCCTTGGTTCTCTGGGAAGAGCTATCGGTTTGCCTTTCTCCCCTTCGCGGCGGC NCTCATCCATTCCTCTCGACACCGCCTTTTTCCCCTTGTCCAAATCGTCGCGGGACTTCGATGCATGCGTGCGTNCGTGTTCGGCCATGGATGAGTGAAGCTTACAATTTCGGGAAAGTACAAGAAGATGTTTGAG ]
consensusID : consensus_8586#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 255 fasta sequence
[GATATGAAGTNCAAGCCCCCAATTTGTTCTGGNCGTTTGATAAATTTGTCATGCTCTTGTCCGTTCCTGTAGTATTGGNGGCNTTTTATAATGGNGTCNTTGGACTGTAATCAATCTTGGTGTGTTTTCCTGTAATATTNCGTTTTCAAGCTGTGTTTTGGTATTGGTTNCTTCTGGAATTGAAGNGATGNGTTTNNTGNCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AU081346 [GATATGAAGTNCAAGCCCCCAATTTGTTCTGGNCGTTTGATAAATTTGTCATGCTCTTGTCCGTTCCTGTAGTATTGGNGGCNTTTTATAATGGNGTCNTTGGACTGTAATCAATCTTGGTGTGTTTTCCTGTAATATTNCGTTTTCAAGCTGTGTTTTGGTATTGGTTNCTTCTGGAATTGAAGNGATGNGTTTNNTGNCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8586#0 AGCAGAACCCTAGGTGGCGGCGGTGGTATCCCGTTCGCGGTGGCGGCGGCACATCCATAG 60
consensus_8586#1 ------------------------------------------------------------
consensus_8586#0 CTGCCGACGGCAGCATCCCGTTCGCGGCTGCGGCGGCACATCCGTAGCTACCGACGGCGG 120
consensus_8586#1 ------------------------------------------------------------
consensus_8586#0 CATCCCGTTCGCGGCGGCGGCGGCGCATCCGTAGCTGCCGACGGCGGCAACCCGTTCGCG 180
consensus_8586#1 ------------------------------------------------------------
consensus_8586#0 GCGGCGGCGGCGCATCCTTGGTTCTCTGGGAAGAGCTATCGGTTTGCCTTTCTCCCCTTC 240
consensus_8586#1 ------------------------------------------------------------
consensus_8586#0 GCGGCGGCGCCTCATCCATTCCTCTCGACACCGCCTTTTTCCCCTTGTCCAAATCGTCGC 300
consensus_8586#1 ------------------------------------------------------------
consensus_8586#0 GGGACTTCGATGCATGCGTGCGTGCGTGTTCGGCCATGGATGAGTGAAGCTTACAATTTC 360
consensus_8586#1 ------------------------------------------------------------
consensus_8586#0 GGGAAAGTACAAGAAGATGTTTGAGATGGATATGAAGTACAAGCACACAATTTGTTCTGG 420
consensus_8586#1 ----------------------------GATATGAAGTNCAAGCCCCCAATTTGTTCTGG 32
********** ***** * *************
consensus_8586#0 ACGTTTGATAAATTTGTCATGCTCTTGTCCGTTCCTGTAGTATTGGAGGCATGTTATAAT 480
consensus_8586#1 NCGTTTGATAAATTTGTCATGCTCTTGTCCGTTCCTGTAGTATTGGNGGCNTTTTATAAT 92
********************************************* *** * *******
consensus_8586#0 GGAGTCATTGGACTGGTATCAATCTTGGCGTGTTTTCCTGTAATATTACGNTTTCCAGCT 540
consensus_8586#1 GGNGTCNTTGGACTGTAATCAATCTTGGTGTGTTTTCCTGTAATATTNCGTTTTCAAGCT 152
** *** ******** *********** ****************** ** **** ****
consensus_8586#0 GGGTTTTGGTATTGGTTACTTCTGGAATTGGAGAGATGAGTT-GATGACATGGCGGCACT 599
consensus_8586#1 GTGTTTTGGTATTGGTTNCTTCTGGAATTGAAGNGATGNGTTTNNTGNCAAAAAAAAAAA 212
* *************** ************ ** **** *** ** ** *
consensus_8586#0 GAAATTTATATTTCTGTATGTTTTATGGTACATGCAATGCTTGGTGATTTCTGGAATTGA 659
consensus_8586#1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA----------------- 255
*** * * * * * * **
consensus_8586#0 AGATATGATGGATGTATTGCAAT 682
consensus_8586#1 -----------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||