These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8590#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1366 fasta sequence [CCACTCCTCCGCCCTTTTGACCCAACCCCACCGACCCAACGAACGCGAGGCCGCTTCGGCAACCTCCTCCGCGCGATCCCCCAACGCCCGCGAAACCCTAGCTCTCGCTCGCGCGGGGTGCGCCGATGCGGAGGTGGCTGGCGGAGGGGGTCATGGAGCTGGCGGTGGGGGCGCCGGAGTCGAACTCCTCCTTCTCCTCCTCCCCCTCGGGCGCGACGCCGTCGTCGGGGGGCCCGATTGGTGGGTGTCGGGGTGCCACGGGACGGTGTACAGCCTGGCGGTGATGCTCCCGTCGTTGGCGTTCGTCGGGTTCCTGGCGTGGCAGGCGCGCCGGAGCTTCCGCCGCCTCAGCTACGGCCGCTCCCACGTCGTCGTCGTCGCCTACTACGCGCTCCTCTGGGCCGTCGCCGTCCTCAACCTCCTCTGGTGCTTCCTGCAGGCGTGGCAATGTATGCCTGATAGGGCGTTCTCATGGAATGTGCTGTCTCTGTTTACCAAATCAGGGATGTTATTCTTGGAAGTTAGTCTCATAGCATTTCTGCTTCAAGGAAACGAAACCAGTGGTTTTGAATCTTTGGCACGTACGTTTGTTATCTCTGGAGCTGTAGTTGCTGCTGATGTATTGCTCAAGACTATATATGTTTTTGGGTTTGGTGTCTCTTTGTTCATTGATGTTGACCAAGGAACTGGTGGGAAGTGGGGCCTATGGTTTCTACACAAATTGGTGCTTACTGGTGTCTATGGCCTGATTGTGTTCATGTATCACTCAAGGTGGAGAGACAGGTTACCTGCAAAACCAGCATATTATAACTATGTCTGTGCGATGTTACTACTGAATGGCATATCACTGTTTGGATGTTTCCTTGTTGCAACTGGAGCTGGATTTGGTTTATGGTTGTACAATCTCACCAGTGTATGTTATCATTCTCTTTACCTTCCACTTCTCTATGTGACTTTCCTAGCAGACTTTTTCCAGGAGGAAGATATGCTCCTAGAGAACGTCTACTACTCAGAGATGAAAGACGCTGGGTTCTTTGATGCTGACTGGGATTGATCTGCAGATACCACGCCGTATGACCACTTTCATGTGAATTTGCAGTCGTAGCTTTCATTTCTGGAACTTAATCTTAGATGGGAAAATTGTATGTAAACAACCGTTATAATCAAATGAAATATGTAAATTGATATCGATATGCTTAATCTGTAGTAGGTATCTTTTATGACAGGTGGTTAGCAGCCCAACTTAGACAATGGATGAGGAAGGGTGTTTTTAACAACTACGAAACTATCACCCTGATGAATGAATTTACGTTTCTGTAGCCTCGTAAAAATTCCATACTAATCACCTCGATATGCTGTTGGAAAA] [+] EMBL AK099399 [CCACTCCTCCGCCCTTTTGACCCAACCCCACCGACCCAACGAACGCGAGGCCGCTTCGGCAACCTCCTCCGCGCGATCCCCCAACGCCCGCGAAACCCTAGCTCTCGCTCGCGCGGGGTGCGCCGATGCGGAGGTGGCTGGCGGAGGGGGTCATGGAGCTGGCGGTGGGGGCGCCGGAGTCGAACTCCTCCTTCTCCTCCTCCCCCTCGGGCGCGACGCCGTCGTCGGGGGGCCCGATTGGTGGGTGTCGGGGTGCCACGGGACGGTGTACAGCCTGGCGGTGATGCTCCCGTCGTTGGCGTTCGTCGGGTTCCTGGCGTGGCAGGCGCGCCGGAGCTTCCGCCGCCTCAGCTACGGCCGCTCCCACGTCGTCGTCGTCGCCTACTACGCGCTCCTCTGGGCCGTCGCCGTCCTCAACCTCCTCTGGTGCTTCCTGCAGGCGTGGCAATGTATGCCTGATAGGGCGTTCTCATGGAATGTGCTGTCTCTGTTTACCAAATCAGGGATGTTATTCTTGGAAGTTAGTCTCATAGCATTTCTGCTTCAAGGAAACGAAACCAGTGGTTTTGAATCTTTGGCACGTACGTTTGTTATCTCTGGAGCTGTAGTTGCTGCTGATGTATTGCTCAAGACTATATATGTTTTTGGGTTTGGTGTCTCTTTGTTCATTGATGTTGACCAAGGAACTGGTGGGAAGTGGGGCCTATGGTTTCTACACAAATTGGTGCTTACTGGTGTCTATGGCCTGATTGTGTTCATGTATCACTCAAGGTGGAGAGACAGGTTACCTGCAAAACCAGCATATTATAACTATGTCTGTGCGATGTTACTACTGAATGGCATATCACTGTTTGGATGTTTCCTTGTTGCAACTGGAGCTGGATTTGGTTTATGGTTGTACAATCTCACCAGTGTATGTTATCATTCTCTTTACCTTCCACTTCTCTATGTGACTTTCCTAGCAGACTTTTTCCAGGAGGAAGATATGCTCCTAGAGAACGTCTACTACTCAGAGATGAAAGACGCTGGGTTCTTTGATGCTGACTGGGATTGATCTGCAGATACCACGCCGTATGACCACTTTCATGTGAATTTGCAGTCGTAGCTTTCATTTCTGGAACTTAATCTTAGATGGGAAAATTGTATGTAAACAACCGTTATAATCAAATGAAATATGTAAATTGATATCGATATGCTTAATCTGTAGTAGGTATCTTTTATGACAGGTGGTTAGCAGCCCAACTTAGACAATGGATGAGGAAGGGTGTTTTTAACAACTACGAAACTATCACCCTGATGAATGAATTTACGTTTCTGTAGCCTCG ] [+] EMBL AU068750 [ CGTCTACTACTCAGAGATGAAAGACGCTGGGTTCTTTGATGCTGACTGGGATTGATCTGCAGATACCACGCCGTATGACCACTTTCATGTGAATTTGCAGTCGTAGCTTTCATTTCTGGAACTTAATCTTAGATGGGAAAATTGTATGTAAACAACCGTTATAATCAAATGAAATATGTAAATTGATATCGATATGCTTAATCTGTAGTAGGTATCTTTTATGACAGGTGGTTAGCAGCCCAACTTAGACAATGGATGAGGAAGGGTGTTTTTAACAACTACGAAACTATCACCCTGATGAATGAATTTACGTTTCTGTAGCCTCGTAAAAATTCCATACTAATCACCTCGATATGCTGTTGGAAAA] consensusID : consensus_8590#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1178 fasta sequence [ATAACTTTGTACTACCTCCATCCCAGAATATAAGGATTTTTAGAGTTGGACATGTAGGTAGAATTAAATGGGGGAACGTTGTGATTGGATGAGAAGTGGAGGTAGAGTGGGGAAATTGAATGGTGGAGGGTTGTGATTGGTTGCGAAGAGAATGTTGTTGGAGTATTTGTTATATTTTGTGACAAATTCTAAAGGCTAAACATTGTTATATTTTGGGATAGAGGGAGTATTGCAAGTTTGCAACTCGTGCACATTTTCTATTGATATTTGCCTGCACTCGTCTCATCATACTGTAGAAGAAGTATTTGACTGCTCAAAAGAAAACAAGGCCCTGTGACTGAACCTTTTAAGCCTTCCATTGTTGCTATGTGTTTTAGTTATCATACTGTAGGTAGAGCCTAGGGAATACTATGTTAGCTTTGAACTCACATTTGCTCCTTCTACAGACTATATATGTTTTTGGGTTTGGTGTCTCTTTGTTCATTGATGTTGACCAAGGAACTGGTGGGAAGTGGGGCCTATGGTTTCTACACAAATTGGTGCTTACTGGTGTCTATGGCCTGATTGTGTTCATGTATCACTCAAGGTGGAGAGACAGGTTACCTGGTAATTGGTTACAATTTACAGCACAGTTATGTTTGTTTAGGTTGTGTGTTTGCTGTTCCATAATCAGCATTTTTTATTATTTTGTTGCAGCAAAACCAGCATATTATAACTATGTCTGTGCGATGTTACTACTGAATGGCATATCACTGTTTGGATGTTTCCTTGTTGCAACTGGAGCTGGATTTGGTTTATGGTAAACACTAGCCCTTTTGTAGTATTTCAGTGTGATGCTAATTCAACATTTGAGAGCATTATTTGAGCAAATATTTCTTGTTACAGGTTGTACAATCTCACCAGTGTATGTTATCATTCTCTTTACCTTCCACTTCTCTATGTGACTTTCCTAGCAGACTTTTTCCAGGTACTAGGGTATCTTCTGTTCTATCAACTTATTACTACGCTGCTTTCTTGATCTTGTACATTGGGATATTCTACGTACCCTCTTGTTCTTATATAGCTTTTCTTCATCAAAAATTGCTGGTTCATGTCTGAGTGTAGGAGGAAGATATGCTCCTAGAGAACGTCTACTACTCAGAGATGAAAGACGCTGGGTTCTTCGACGCTGACTGGGA] [+] EMBL CB678987 [ATAACTTTGTACTACCTCCATCCCAGAATATAAGGATTTTTAGAGTTGGACATGTAGGTAGAATTAAATGGGGGAACGTTGTGATTGGATGAGAAGTGGAGGTAGAGTGGGGAAATTGAATGGTGGAGGGTTGTGATTGGTTGCGAAGAGAATGTTGTTGGAGTATTTGTTATATTTTGTGACAAATTCTAAAGGCTAAACATTGTTATATTTTGGGATAGAGGGAGTATTGCAAGTTTGCAACTCGTGCACATTTTCTATTGATATTTGCCTGCACTCGTCTCATCATACTGTAGAAGAAGTATTTGACTGCTCAAAAGAAAACAAGGCCCTGTGACTGAACCTTTTAAGCCTTCCATTGTTGCTATGTGTTTTAGTTATCATACTGTAGGTAGAGCCTAGGGAATACTATGTTAGCTTTGAACTCACATTTGCTCCTTCTACAGACTATATATGTTTTTGGGTTTGGTGTCTCTTTGTTCATTGATGTTGACCAAGGAACTGGTGGGAAGTGGGGCCTATGGTTTCTACACAAATTGGTGCTTACTGGTGTCTATGGCCTGATTGTGTTCATGTATCACTCAAGGTGGAGAGACAGGTTACCTGGTAATTGGTTACAATTTACAGCACAGTTATGTTTGTTTAGGTTGTGTGTTTGCTGTTCCATAATCAGCATTTTTTATTATTTTGTTGCAGCAAAACCAGCATATTATAACTATGTCTGTGCGATGTTACTACTGAATG ] [-] EMBL CB678988 [ TGTGTTCATGTATCACTCAAGGTGGAGAGACAGGTTACCTGGTAATTGGTTACAATTTACAGCACAGTTATGTTTGTTTAGGTTGTGTGTTTGCTGTTCCATAATCAGCATTTTTTATTATTTTGTTGCAGCAAAACCAGCATATTATAACTATGTCTGTGCGATGTTACTACTGAATGGCATATCACTGTTTGGATGTTTCCTTGTTGCAACTGGAGCTGGATTTGGTTTATGGTAAACACTAGCCCTTTTGTAGTATTTCAGTGTGATGCTAATTCAACATTTGAGAGCATTATTTGAGCAAATATTTCTTGTTACAGGTTGTACAATCTCACCAGTGTATGTTATCATTCTCTTTACCTTCCACTTCTCTATGTGACTTTCCTAGCAGACTTTTTCCAGGTACTAGGGTATCTTCTGTTCTATCAACTTATTACTACGCTGCTTTCTTGATCTTGTACATTGGGATATTCTACGTACCCTCTTGTTCTTATATAGCTTTTCTTCATCAAAAATTGCTGGTTCATGTCTGAGTGTAGGAGGAAGATATGCTCCTAGAGAACGTCTACTACTCAGAGATGAAAGACGCTGGGTTCTTCGACGCTGACTGGGA] consensusID : consensus_8590#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 460 fasta sequence [TATGCTTACGTCAGTTCTCTTGTTACCCCGTGTCCCACCTTTCTTCTATGTTGACCTTTTCCTGGCCAGACTTTGTTCCAGGAGGAAGATATGCTCCTAGAGAACGTCTACTACTCAGAGTATTGAAAGACGCCTGGGTTCTTTGATGCTGACTGGGACTTGATCTGCAGATACCACAGCCTTATGACCACTTTCATGTGAATTTGGCAGTCGTAGCTTTCATTTCTGGGAACTTGAATCTTAGATGGGAAAATTGTGATGTAAACAACCGTTATAATCAAATGAAATATGTAAATTGATATCGATATGCTTAATCTGTAGTAGGTATCTTTTATGACAGGTGGTTAGCAGCCCAACTTAGACAATGGATGAGGAAGGATGTTTTTAACAACTACGTAACTGTCACCCTGATGAATGAATTTACGTTTCCGTAGCCTCGTAAAAATTCCGTACTAAAAAA] [+] EMBL BQ907116 [TATGCTTACGTCAGTTCTCTTGTTACCCCGTGTCCCACCTTTCTTCTATGTTGACCTTTTCCTGGCCAGACTTTGTTCCAGGAGGAAGATATGCTCCTAGAGAACGTCTACTACTCAGAGTATTGAAAGACGCCTGGGTTCTTTGATGCTGACTGGGACTTGATCTGCAGATACCACAGCCTTATGACCACTTTCATGTGAATTTGGCAGTCGTAGCTTTCATTTCTGGGAACTTGAATCTTAGATGGGAAAATTGTGATGTAAACAACCGTTATAATCAAATGAAATATGTAAATTGATATCGATATGCTTAATCTGTAGTAGGTATCTTTTATGACAGGTGGTTAGCAGCCCAACTTAGACAATGGATGAGGAAGGATGTTTTTAACAACTACGTAACTGTCACCCTGATGAATGAATTTACGTTTCCGTAGCCTCGTAAAAATTCCGTACTAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8590#0 CCACTCCTCCGCCCTTTTGACCCAACCCCACCGACCCAACGAACGCGAGGCCGCTTCGGC 60 consensus_8590#2 ------------------------------------------------------------ consensus_8590#1 ------------------------------------------------------------ consensus_8590#0 AACCTCCTCCGCGCGATCCCCCAACGCCCGCGAAACCCTAGCTCTCGCTCGCGCGGGGTG 120 consensus_8590#2 ------------------------------------------------------------ consensus_8590#1 ------------------------------------------------------------ consensus_8590#0 CGCCGATGCGGAGGTGGCTGGCGGAGGGGGTCATGGAGCTGGCGGTGGGGGCGCCGGAGT 180 consensus_8590#2 ------------------------------------------------------------ consensus_8590#1 ------------------------------------------------------------ consensus_8590#0 CGAACTCCTCCTTCTCCTCCTCCCCCTCGGGCGCGACGCCGTCGTCGGGGGGCCCGATTG 240 consensus_8590#2 ------------------------------------------------------------ consensus_8590#1 ---ATAACTTTGTACTACCTCCATCCCAGAATATAAGGATTTTTAGAGTTGGACATGTAG 57 consensus_8590#0 GTGGGTGTCGG-GGTGCCACGGGACGGTGTACAGCCTGGCGGTGATGCTCCCGTCGTTGG 299 consensus_8590#2 ------------------------------------------------------------ consensus_8590#1 GTAGAATTAAATGGGGGAACGTTGTGATTGGATGAGAAGTGGAGGTAGAGTGGGGAAATT 117 consensus_8590#0 CGTTCGTCGGGTTCCTGGCGTGGCAGGCGCGCCGGAGCTTCCGCCGCCTCAGCTACGGCC 359 consensus_8590#2 ------------------------------------------------------------ consensus_8590#1 GAATGGTGGAGGGTTGTGATTGGTTGCGAAGAGAATGTTGTTGGAGTATTTGTTATATTT 177 consensus_8590#0 GCTCCCACGTCGTCGTCGTCGCCTACTACGCGCTCCTCTGGGCCGTCGCCGTCCTCAACC 419 consensus_8590#2 ------------------------------------------------------------ consensus_8590#1 TGTGACAAATTCTAAAGGCTAAACATTGTTATATTTTGGGATAGAGGGAGTATTGCAAGT 237 consensus_8590#0 TCCTCTGGTGCTTCCTGCAGGCGTGGCAATGTATGCCTGATAGGGCGTTCTCATGGAATG 479 consensus_8590#2 ------------------------------------------------------------ consensus_8590#1 TTGCAACTCGTGCACATTTTCTATTGATATTTGCCTGCACTCGTCTCATCATACTGTAGA 297 consensus_8590#0 TGCTGTCTCTGTTTACCAAATCAGGGATGTTATTCTTGGAAGTTAGTCTCATAGCATTTC 539 consensus_8590#2 ------------------------------------------------------------ consensus_8590#1 AGAAGTATTTGACTGCTCAAA-AGAAAACAAGGCCCTGTGACTGAACCTTTTAAGCCTTC 356 consensus_8590#0 TGCTTCAAGGAAACGAAACCAGTGGTTTTGAATCTTTGGCACGTACGTTTGTTATCTCTG 599 consensus_8590#2 ------------------------------------------------------------ consensus_8590#1 CATTGTTGCTATGTGTTTTAGTTATCATACTGTAGGTAGAGCCTAGGGAATACTATGTTA 416 consensus_8590#0 GAGCTGTAGTTGCTGCTGATGTATTGCTCAAGACTATATATGTTTTTGGGTTTGGTGTCT 659 consensus_8590#2 ------------------------------------------------------------ consensus_8590#1 GCTTTGAACTCACATTTGCTCC--TTCTACAGACTATATATGTTTTTGGGTTTGGTGTCT 474 consensus_8590#0 CTTTGTTCATTGATGTTGACCAAGGAACTGGTGGGAAGTGGGGCCTATGGTTTCTACACA 719 consensus_8590#2 ------------------------------------------------------------ consensus_8590#1 CTTTGTTCATTGATGTTGACCAAGGAACTGGTGGGAAGTGGGGCCTATGGTTTCTACACA 534 consensus_8590#0 AATTGGTGCTTACTGGTGTCTATGGCCTGATTGTGTTCATGTATCACTCAAGGTGGAGAG 779 consensus_8590#2 ------------------------------------------------------------ consensus_8590#1 AATTGGTGCTTACTGGTGTCTATGGCCTGATTGTGTTCATGTATCACTCAAGGTGGAGAG 594 consensus_8590#0 ACAGGTTACCTGCAAAACCAGCATATT-------ATAACTATGTCTGTGCGATGTTACTA 832 consensus_8590#2 ------------------------------------------------------------ consensus_8590#1 ACAGGTTACCTGGTAATTGGTTACAATTTACAGCACAGTTATGTTTGTTTAGGTTGTGTG 654 consensus_8590#0 CTGAATGGCATATCACTGT--TTGGATGTTTCCTTGTTGCAACTGGAGCTGGATTTGGT- 889 consensus_8590#2 ------------------------------------------------------------ consensus_8590#1 TTTGCTGTTCCATAATCAGCATTTTTTATTATTTTGTTGCAGCAAAACCAGCATATTATA 714 consensus_8590#0 -TTATGGTTGTACAATCTCACCAGTG--TATGTTATCATTCTCTTTACCTTCCACTTCTC 946 consensus_8590#2 ----------TATGCTTACGTCAGT---TCTCTTGTTACCCCGTGT-CCCACCTTTCTTC 46 consensus_8590#1 ACTATGTCTGTGCGATGTTACTACTGAATGGCATATCACTGTTTGGATGTTTCCTTGTTG 774 * * * * * * * * * * * * consensus_8590#0 TATGT-GAC--TTTCCTAGC-------AGACTTT-TTCCAGGAGGAAGATATGCTCCTAG 995 consensus_8590#2 TATGTTGACCTTTTCCTGGCC------AGACTTTGTTCCAGGAGGAAGATATGCTCCTAG 100 consensus_8590#1 CAACTGGAGCTGGATTTGGTTTATGGTAAACACTAGCCCTTTTGTAGTATTTCAGTGTGA 834 * * ** * * * ** * ** * * ** * * consensus_8590#0 AGAACGTCTACTACTCAGAGA--TGAAAGACGC-TGGGTTCTTTGATGCTGACTGGG--A 1050 consensus_8590#2 AGAACGTCTACTACTCAGAGTATTGAAAGACGCCTGGGTTCTTTGATGCTGACTGGG--A 158 consensus_8590#1 TGCTAATTCAACATTTGAGAGCATTATTTGAGCAAATATTTCTTGTTACAGGTTGTACAA 894 * * * * * * * ** ** *** * * * ** * consensus_8590#0 -TTGATCTGCAGATACCA-C-GCCGTATGACCACTTTCATGTGAATTTG-CAGTCGTAGC 1106 consensus_8590#2 CTTGATCTGCAGATACCA-CAGCCTTATGACCACTTTCATGTGAATTTGGCAGTCGTAGC 217 consensus_8590#1 TCTCACCAGTGTATGTTATCATTCTCTTTACCTTCCACTTCTCTATGTGACTTTCCTAGC 954 * * * * ** * * * * *** * * * ** ** * ** **** consensus_8590#0 TTTCATTT-CTGG-AACTT-A--ATCTTAGATGGGA--AAATTGT-ATGTAAACAACCGT 1158 consensus_8590#2 TTTCATTT-CTGGGAACTTGA--ATCTTAGATGGGA--AAATTGTGATGTAAACAACCGT 272 consensus_8590#1 AGACTTTTTCCAGGTACTAGGGTATCTTCTGTTCTATCAACTTATTAC-TACGCTGCTTT 1013 * *** * * *** ***** * * ** ** * * ** * * * consensus_8590#0 TATAATCAAATGAAATATGTAAATTGATATCGATATGCTTAATCTGTAGTAGGTATCTTT 1218 consensus_8590#2 TATAATCAAATGAAATATGTAAATTGATATCGATATGCTTAATCTGTAGTAGGTATCTTT 332 consensus_8590#1 CTTGATCTTGTACATTGGGATATTCTACGT--ACCCTCTTGTTCTTATATAGCTTTTCTT 1071 * *** * * * * * * * * * *** *** *** * * ** consensus_8590#0 TATGACAGGTGGTTAGCAGCCCAACTTAGACAATGGATGAGGAAGG-GTGTTTTTAACAA 1277 consensus_8590#2 TATGACAGGTGGTTAGCAGCCCAACTTAGACAATGGATGAGGAAGG-ATGTTTTTAACAA 391 consensus_8590#1 CATCAAAAATTGCTG---GTTCATGTCTGA--GTGTAGGAGGAAGATATGCTCCTAGAGA 1126 ** * * * * * * ** * ** ** * ******* ** * ** * consensus_8590#0 CTACGAAACTATCACCCTGATGAATGAATTTACGTTTCTGTAGCCTCGTAAAAATTCCAT 1337 consensus_8590#2 CTACGTAACTGTCACCCTGATGAATGAATTTACGTTTCCGTAGCCTCGTAAAAATTCCGT 451 consensus_8590#1 ACGTCTACTACTCAG--AGATGAAAGACGCTGGGTTCTTCGACGCTGACTGGGA------ 1178 * *** ****** ** * *** * ** * consensus_8590#0 ACTAATCACCTCGATATGCTGTTGGAAAA 1366 consensus_8590#2 ACTAAAAAA-------------------- 460 consensus_8590#1 ----------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||