These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8594#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 823 fasta sequence [CGCTGGGCTCTGGAGGAGCGCCGGGATGGAGGTGGCAATCGCCACCGCGGCGGTCGTGGCCATGGGTACGGGGAACCGCGTCCTCTACAAGCTCGCCCTCGTGCCGCTCCGCGACTACCCCTTCTTCCTCGCCCAGCTCGCCACGTTCGGCTATGTGGTTGTCTATTTCTCGATCCTGTATCTTCGCCATCAAGCTGGCATTGTCACTGATGAGATGCTGTCTCTACCACAAAAACCTTTTCTGGCTGTAGGCCTCTTGGAGGCTTTATCAGCAGCATCAGGGATGGCTGCTGGAGCCGTTCTTTCTGGGGCTTCGATACCAATACTGTCACAGACGTATCTTGTTTGGCAGCTTCTTTTATCTGCTATTTTTTTGAAGAGGCGCTATAGAATAAATGAGATAACTGGATGCTTTCTTGTGACGGTTGGCGTAATAATAACTGTAGCAAGTGGATCTAGTGCTGGTGCTTCATTAAAAGGTACTGGAATTTTGTGGCCACTGCTCATGATAATATCGTTCTTTCTCCAAGCCGCTGATACAGTA-TTGAAGGAGATAATATTTCTGAATGCTGCCAAGAAATTGAAGGGTGGCTCGGTTGATCTTTTTGTCGTCAACTCATATGGCTCTGCTTATCAAGCTCTTTTCATGTGTCTCTTGTTGCCATTCTTGTCAAAGTTATGGGGAGTGCCATTCCATCAACTACCAACATACGTCAGAGATGGCACCGCCTGCTTTCTGAACATGGGATCACTATCTTCTGGCTGTGAAGGGGCACCACTATTACCACTACTATTTGTGTTTGGTTAATATGGGCTTCAATAT] [+] EMBL CB620062 [CGCTGGGCTCTGGAGGAGCGCCGGGATGGAGGTGGCAATCGCCACCGCGGCGGTCGTGGCCATGGGTACGGGGAACCGCGTCCTCTACAAGCTCGCCCTCGTGCCGCTCCGCGACTACCCCTTCTTCCTCGCCCAGCTCGCCACGTTCGGCTATGTGGTTGTCTATTTCTCGATCCTGTATCTTCGCCATCAAGCTGGCATTGTCACTGATGAGATGCTGTCTCTACCACAAAAACCTTTTCTGGCTGTAGGCCTCTTGGAGGCTTTATCAGCAGCATCAGGGATGGCTGCTGGAGCCGTTCTTTCTGGGGCTTCGATACCAATACTGTCACAGACGTATCTTGTTTGGCAGCTTCTTTTATCTGCTATTTTTTTGAAGAGGCGCTATAGAATAAATGAGATAACTGGATGCTTTCTTGTGACGGTTGGCGTAATAATAACTGTAGCAAGTGGATCTAGTGCTGGTGCTTCATTAAAAGGTACTGGAATTTTGTGGCCACTGCTCATGATAATATCGTTCTTTCTCCAAGCCGCTGATACAGTA TTGAAGGAGATAATATTTCTGAATGCTGCCAAGAAATTGAAGGGTGGCTCGGTTGATCTTTTTGTCGTCAACTCATATGGCTCTGCTTATCAAGCTCTTTTCATGTGTCTCTTGTTGCCATTCTTGTCAAAGTTATGGGGAGTGCCATTCCATCAACTACCAACATACGTCAGAGATGGCACCGCCTGCTTTCTGAACATGGGATCACTATCTTCTGGCTGTGAAGGGGCACCACTATTACCACTACTATTTGTGTTTGGTTAATATGGGCTTCAATAT] [+] EMBL CB647624 [ GGAGGAGCGCCGGGATGGAGGTGGCAATCGCCACCGCGGCGGTCGTGGCCATGGGTACGGGGAACCGCGTCCTCTACAAGCTCGCCCTCGTGCCGCTCCGCGACTACCCCTTCTTCCTCGCCCAGCTCGCCACGTTCGGCTATGTGGTTGTCTATTTCTCGATCCTGTATCTTCGCCATCAAGCTGGCATTGTCACTGATGAGATGCTGTCTCTACCACAAAAACCTTTTCTGGCTGTAGGCCTCTTGGAGGCTTTATCAGCAGCATCAGGGATGGCTGCTGGAGCCGTTCTTTCTGGGGCTTCGATACCAATACTGTCACAGACGTATCTTGTTTGGCAGCTTCTTTTATCTGCTATTTTTTTGAAGAGGCGCTATAGAATAAATGAGATAACTGGATGCTTTCTTGTGACGGTTGGTGTAATAATAACTGTAGCAAGTGGATCTAGTGCTGGTGCTTCATTAAAAGGTACTGGAATTTTGTGGCCACTGCTCATGATAATATCGTTCTTTCTCCAAGCCGCTGATACAGTA TTGAAGGAGATAATATTTCTGAATGCTGCCAAGAAATTGAAGGGTGGCTCGGTTGATCTTTTTGTCGTCAACTCATATGGCTCTGCTTATCAAGCTCTTTTCATGTGTCTCTTGTTGCCATTCTTGTCAAAGTTATGGGGAGTGCCATTCCATCAACTACCAACATACATCAGAGATGGCACCGCCTGCTTTCTGAACATGGGATCACTAT ] [+] EMBL CB634635 [ TCTATTTATGGATCCTGTATCTTCGCTGTCAGGGTGGCCTTGATGCTGATGAGATGCTGTCTCTACTTTATGGACCTTTTCTGGCTGTAGGTCTCTTGGAGGCTTTATCAGCAGCATCAGGGATGGCTGCTGGAGCCGTTCTTTCTGGGGCTTCGATACCAATACTGTCACAGACGTATCTTGTTTGGCAGCTTCTTTTATCTGCTATTTTTTTGAAGAGGCGCTATAGAATAAATGAGATAACTGGATGCTTTCTTGTGACGGTTGGCGTAATAATAACTGTAGCAAGTGGATCTAGTGCTGGTGCTTCATTAAAAGGTACTGGAATTTTGTGGCCACTGCTCATGATAATATCGTTCTTTCTCCAAGCCGCTGATACAGTATTTGAACGAGATAATATTTCTGAATGCTGCCAAGAAATTGAAGGGTGGCTCGG ] consensusID : consensus_8594#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 568 fasta sequence [ACATGCCCTTCAATCTTCTGGCTGTGAAGGGGCACCACTATTACCACTACTATTTGTGTTGGTTAATATGCGGCTTCAATATATCACTTCTACACTTACTAAAGATTTCTTCAGCAGTTGTATCTTCTCTGGCCTCTACATTTTCAGTTCCACTGTCCATCTACGCCTTCACCCTACCGTTGCCGTACATCGGTGTGGCGTCTACTCTCCCTCCTGGCTTTGTTGCAGGCGCCATGTCTTCACAACCATGGTTCATATATATAGGCTTGAGGCATGGTTCATATAGGCTTGAGGTAGAACAGAAGTTCTCCTGAGGAACCGGCCATCTGCCTGCTGTTGCATACTGTATCATATATCACACGAGTAAACTCCTACCCAATAAGTGTGAGGAAATGCCACACGGATAAGGAATAAGACTCAAAAGAAGGTACCTGATCAACCATCAGGCGTTCTTATTCTGATGTTACTGACTGAAGTTGGGGGATGCCAGTACAGTTTCTAGACGGGACAAGAACCAGGGAGAAAAGAAGGAGCATCATCACGACGGGGATGAAGAGCAAGAATGGCG] [+] EMBL CB652139 [ACATGCCCTTCAATCTTCTGGCTGTGAAGGGGCACCACTATTACCACTACTATTTGTGTTGGTTAATATGCGGCTTCAATATATCACTTCTACACTTACTAAAGATTTCTTCAGCAGTTGTATCTTCTCTGGCCTCTACATTTTCAGTTCCACTGTCCATCTACGCCTTCACCCTACCGTTGCCGTACATCGGTGTGGCGTCTACTCTCCCTCCTGGCTTTGTTGCAGGCGCCATGTCTTCACAACCATGGTTCATATATATAGGCTTGAGGCATGGTTCATATAGGCTTGAGGTAGAACAGAAGTTCTCCTGAGGAACCGGCCATCTGCCTGCTGTTGCATACTGTATCATATATCACACGAGTAAACTCCTACCCAATAAGTGTGAGGAAATGCCACACGGATAAGGAATAAGACTCAAAAGAAGGTACCTGATCAACCATCAGGCGTTCTTATTCTGATGTTACTGACTGAAGTTGGGGGATGCCAGTACAGTTTCTAGACGGGACAAGAACCAGGGAGAAAAGAAGGAGCATCATCACGACGGGGATGAAGAGCAAGAATGGCG] consensusID : consensus_8594#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 418 fasta sequence [CCACGCGTCCGATACAGTATGCAACAGCAGGCAGATGGCCGGTTCCTCCAGGAGAACTTCTNGTTCTACCTCAAGCCTATATGAACCATGCCTCAAGCCTATATATATGANCCATGGTTGTGAAGACTGGGAAGAAAAAAAATGAACAAATGAATGTTAGCTAGGAATTCCTGCTGGTGAAGGATTTCCAGGATTTTTTTGTGCCTGTGGAAAGCTGTAGAGTAGTAGGCCGGCGGTCAGCACCATGGCGCCTGCAACAAAGCCAGGAGGGAGAGTAGACGCCACACCGATGTACGGCAACGGTAGGGTGAAGGCGTAGATGGACAGTGGAACTGCATGCACCAAGAAATTTAGGCATCAGAAATGATTATAGTTCTCTCTGCAGGTCTGCAGTTTACATTTATTAATATTTAAAAAA] [+] EMBL AU031256 [CCACGCGTCCGATACAGTATGCAACAGCAGGCAGATGGCCGGTTCCTCCAGGAGAACTTCTNGTTCTACCTCAAGCCTATATGAACCATGCCTCAAGCCTATATATATGANCCATGGTTGTGAAGACTGGGAAGAAAAAAAATGAACAAATGAATGTTAGCTAGGAATTCCTGCTGGTGAAGGATTTCCAGGATTTTTTTGTGCCTGTGGAAAGCTGTAGAGTAGTAGGCCGGCGGTCAGCACCATGGCGCCTGCAACAAAGCCAGGAGGGAGAGTAGACGCCACACCGATGTACGGCAACGGTAGGGTGAAGGCGTAGATGGACAGTGGAACTGCATGCACCAAGAAATTTAGGCATCAGAAATGATTATAGTTCTCTCTGCAGGTCTGCAGTTTACATTTATTAATATTTAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8594#0 CGCTGGGCTCTGGAGGAGCGCCGGGATGGAGGTGGCAATCGCCACCGCGGCGGTCGTGGC 60 consensus_8594#1 ------------------------------------------------------------ consensus_8594#2 ------------------------------------------------------------ consensus_8594#0 CATGGGTACGGGGAACCGCGTCCTCTACAAGCTCGCCCTCGTGCCGCTCCGCGACTACCC 120 consensus_8594#1 ------------------------------------------------------------ consensus_8594#2 ------------------------------------------------------------ consensus_8594#0 CTTCTTCCTCGCCCAGCTCGCCACGTTCGGCTATGTGGTTGTCTATTTCTCGATCCTGTA 180 consensus_8594#1 ------------------------------------------------------------ consensus_8594#2 ------------------------------------------------------------ consensus_8594#0 TCTTCGCCATCAAGCTGGCATTGTCACTGATGAGATGCTGTCTCTACCACAAAAACCTTT 240 consensus_8594#1 ACATGCCCTTCAATCTT---CTGGCTGTGAAGGGGCACCACTATTACCACTACTATTTGT 57 consensus_8594#2 ------------------------------------------------------------ consensus_8594#0 TCTGGCTG-TAGGCCTCTTGGAGGCTTTA--TCAGCAGC---ATCAGGGATGGCTGCTGG 294 consensus_8594#1 GTTGGTTAATATGCGGCTTCAATATATCACTTCTACACTT--ACTAAAGATTTCTTCAGC 115 consensus_8594#2 --------CCACGCGTCCGATACAGTATGCAACAGCAGGCAGATGGCCGGTTCCTCCAGG 52 * ** * * * ** * * * ** * * consensus_8594#0 AGCCGTTCTTTCTGGGGCTTCGATACCAATACTGTCACAGACGTATCTTGTTTGGCAGCT 354 consensus_8594#1 AGTTGTATCTTCTCTGGCCTCTACATTTTCAGTTCCAC----------TGTCCATCTACG 165 consensus_8594#2 AGAACTTCTNGTTCTA-CCTCAAGCCTATATGAACCA-----------TGCCTCAAGCCT 100 ** * * * ** * ** ** * consensus_8594#0 TCTTTTATCTGCTATTTTTTTGAAGAGGCGCTATAGAATAAATGAGATAACTGGATGCTT 414 consensus_8594#1 CCTTCACCCTACCGTTGCCGTACATCGGTGT-----GGCGTCTACTCTCCCTCCTGGCTT 220 consensus_8594#2 ATATATATGANCCATGGTTGTGAAGACTGGGAAGAAAAAAAATGA-ACAAATGAATGTTA 159 * * * * * * * * * * consensus_8594#0 TCTTGTGACGGTTGGCGTAATAATAACTGTAGCAAGTGGATCTAGTGCTGGTGCTTCATT 474 consensus_8594#1 TGTTGCAGGCGCCA-TGTCTTCACAACCATGGTTCATATATATAGGCTTGAGGCATGGTT 279 consensus_8594#2 GCTAGGAATTCCTGCTGGTGAAGGATTTCCAGGATTT---TTTTGTGCCTGTGGAAAGCT 216 * * * * * * * * * * * consensus_8594#0 AAAAGGTACTGGAATTTTGTGGCCACTGCTCATGATAATATCGTTCTTTCTCCAAGCCGC 534 consensus_8594#1 CATATAGGCTTGAGGTAGAACAGAAGTTCTCCTGAGGA-ACCGGCCAT-CTGCCTGCTGT 337 consensus_8594#2 GTAGAGTAGT--AGGCCGGCGGTCAGCAC-CATGGCGCCTGCAACAAAGCCAGGAGGGAG 273 * * * * * ** * * * consensus_8594#0 TG-ATACAGTATTGAAGGAGATAATATTTCTGAATGCTGCCAAGAAATTGAAGGGTGGCT 593 consensus_8594#1 TGCATACTGTATCATATATCACACGAGT--AAACTCCTACCCAATAAGTGTGAGGAAATG 395 consensus_8594#2 AGTAGACGCCACACCGATGTACGGCAAC----GGTAGGGTGAAGGCGTAGATGGACAGTG 329 * * ** * * * * * * * consensus_8594#0 CGGTTGATCTTTTTGTCGTCA-ACTCATATGGCTCTGCTT-ATCAAGCTCTTTTCATGTG 651 consensus_8594#1 CCAC--ACGGATAAGGAATAAGACTCAAAAGAAGGTACCTGATCAACCATCAGGCGTTCT 453 consensus_8594#2 GAAC---TGCATGCACCAAGAAATTTAGGCATCAGAAATGATTATAGTTCTCTCTGCAGG 386 * * * * * * * consensus_8594#0 TCTCTTGTTGCCATTCTTGTCAAAGTTATGGGGAGTGCCATTCCATCAACTACCAACATA 711 consensus_8594#1 TATTCTGATGTTA--CTGACTGAAGT--TGGGGGATGCCAGTACAGTTTCTA-------- 501 consensus_8594#2 TCTGCAGTTTACA--TTTATTAATATT-TAAAAAA------------------------- 418 * * * * * * * * * consensus_8594#0 CGTCAGAGATGGCACCGCCTGCTTTCTGAACATGGGATCACTATCTTCTGGCTGTGAAGG 771 consensus_8594#1 -GACGGGACAAGAACCAGG--------GAGAAAAGAAGGAGCATCATCACGACGGGGATG 552 consensus_8594#2 ------------------------------------------------------------ consensus_8594#0 GGCACCACTATTACCACTACTATTTGTGTTTGGTTAATATGGGCTTCAATAT 823 consensus_8594#1 AAGAGCAAGAATGGCG------------------------------------ 568 consensus_8594#2 ---------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||