cluster # 8594

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Oryza sativa
cluster # 8594 cluster # 8594 Sequences # 5 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8594#0 length = 823 sequences # 3

consensus_8594#1 length = 568 sequences # 1
consensus_8594#2 length = 418 sequences # 1

consensusID : consensus_8594#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 823
fasta sequence

                              [CGCTGGGCTCTGGAGGAGCGCCGGGATGGAGGTGGCAATCGCCACCGCGGCGGTCGTGGCCATGGGTACGGGGAACCGCGTCCTCTACAAGCTCGCCCTCGTGCCGCTCCGCGACTACCCCTTCTTCCTCGCCCAGCTCGCCACGTTCGGCTATGTGGTTGTCTATTTCTCGATCCTGTATCTTCGCCATCAAGCTGGCATTGTCACTGATGAGATGCTGTCTCTACCACAAAAACCTTTTCTGGCTGTAGGCCTCTTGGAGGCTTTATCAGCAGCATCAGGGATGGCTGCTGGAGCCGTTCTTTCTGGGGCTTCGATACCAATACTGTCACAGACGTATCTTGTTTGGCAGCTTCTTTTATCTGCTATTTTTTTGAAGAGGCGCTATAGAATAAATGAGATAACTGGATGCTTTCTTGTGACGGTTGGCGTAATAATAACTGTAGCAAGTGGATCTAGTGCTGGTGCTTCATTAAAAGGTACTGGAATTTTGTGGCCACTGCTCATGATAATATCGTTCTTTCTCCAAGCCGCTGATACAGTA-TTGAAGGAGATAATATTTCTGAATGCTGCCAAGAAATTGAAGGGTGGCTCGGTTGATCTTTTTGTCGTCAACTCATATGGCTCTGCTTATCAAGCTCTTTTCATGTGTCTCTTGTTGCCATTCTTGTCAAAGTTATGGGGAGTGCCATTCCATCAACTACCAACATACGTCAGAGATGGCACCGCCTGCTTTCTGAACATGGGATCACTATCTTCTGGCTGTGAAGGGGCACCACTATTACCACTACTATTTGTGTTTGGTTAATATGGGCTTCAATAT]

[+] EMBL CB620062             [CGCTGGGCTCTGGAGGAGCGCCGGGATGGAGGTGGCAATCGCCACCGCGGCGGTCGTGGCCATGGGTACGGGGAACCGCGTCCTCTACAAGCTCGCCCTCGTGCCGCTCCGCGACTACCCCTTCTTCCTCGCCCAGCTCGCCACGTTCGGCTATGTGGTTGTCTATTTCTCGATCCTGTATCTTCGCCATCAAGCTGGCATTGTCACTGATGAGATGCTGTCTCTACCACAAAAACCTTTTCTGGCTGTAGGCCTCTTGGAGGCTTTATCAGCAGCATCAGGGATGGCTGCTGGAGCCGTTCTTTCTGGGGCTTCGATACCAATACTGTCACAGACGTATCTTGTTTGGCAGCTTCTTTTATCTGCTATTTTTTTGAAGAGGCGCTATAGAATAAATGAGATAACTGGATGCTTTCTTGTGACGGTTGGCGTAATAATAACTGTAGCAAGTGGATCTAGTGCTGGTGCTTCATTAAAAGGTACTGGAATTTTGTGGCCACTGCTCATGATAATATCGTTCTTTCTCCAAGCCGCTGATACAGTA TTGAAGGAGATAATATTTCTGAATGCTGCCAAGAAATTGAAGGGTGGCTCGGTTGATCTTTTTGTCGTCAACTCATATGGCTCTGCTTATCAAGCTCTTTTCATGTGTCTCTTGTTGCCATTCTTGTCAAAGTTATGGGGAGTGCCATTCCATCAACTACCAACATACGTCAGAGATGGCACCGCCTGCTTTCTGAACATGGGATCACTATCTTCTGGCTGTGAAGGGGCACCACTATTACCACTACTATTTGTGTTTGGTTAATATGGGCTTCAATAT]
[+] EMBL CB647624             [           GGAGGAGCGCCGGGATGGAGGTGGCAATCGCCACCGCGGCGGTCGTGGCCATGGGTACGGGGAACCGCGTCCTCTACAAGCTCGCCCTCGTGCCGCTCCGCGACTACCCCTTCTTCCTCGCCCAGCTCGCCACGTTCGGCTATGTGGTTGTCTATTTCTCGATCCTGTATCTTCGCCATCAAGCTGGCATTGTCACTGATGAGATGCTGTCTCTACCACAAAAACCTTTTCTGGCTGTAGGCCTCTTGGAGGCTTTATCAGCAGCATCAGGGATGGCTGCTGGAGCCGTTCTTTCTGGGGCTTCGATACCAATACTGTCACAGACGTATCTTGTTTGGCAGCTTCTTTTATCTGCTATTTTTTTGAAGAGGCGCTATAGAATAAATGAGATAACTGGATGCTTTCTTGTGACGGTTGGTGTAATAATAACTGTAGCAAGTGGATCTAGTGCTGGTGCTTCATTAAAAGGTACTGGAATTTTGTGGCCACTGCTCATGATAATATCGTTCTTTCTCCAAGCCGCTGATACAGTA TTGAAGGAGATAATATTTCTGAATGCTGCCAAGAAATTGAAGGGTGGCTCGGTTGATCTTTTTGTCGTCAACTCATATGGCTCTGCTTATCAAGCTCTTTTCATGTGTCTCTTGTTGCCATTCTTGTCAAAGTTATGGGGAGTGCCATTCCATCAACTACCAACATACATCAGAGATGGCACCGCCTGCTTTCTGAACATGGGATCACTAT                                                                    ]
[+] EMBL CB634635             [                                                                                                                                                                 TCTATTTATGGATCCTGTATCTTCGCTGTCAGGGTGGCCTTGATGCTGATGAGATGCTGTCTCTACTTTATGGACCTTTTCTGGCTGTAGGTCTCTTGGAGGCTTTATCAGCAGCATCAGGGATGGCTGCTGGAGCCGTTCTTTCTGGGGCTTCGATACCAATACTGTCACAGACGTATCTTGTTTGGCAGCTTCTTTTATCTGCTATTTTTTTGAAGAGGCGCTATAGAATAAATGAGATAACTGGATGCTTTCTTGTGACGGTTGGCGTAATAATAACTGTAGCAAGTGGATCTAGTGCTGGTGCTTCATTAAAAGGTACTGGAATTTTGTGGCCACTGCTCATGATAATATCGTTCTTTCTCCAAGCCGCTGATACAGTATTTGAACGAGATAATATTTCTGAATGCTGCCAAGAAATTGAAGGGTGGCTCGG                                                                                                                                                                                                                                   ]




>consensus_8594#0
CGCTGGGCTCTGGAGGAGCGCCGGGATGGAGGTGGCAATCGCCACCGCGGCGGTCGTGGC
CATGGGTACGGGGAACCGCGTCCTCTACAAGCTCGCCCTCGTGCCGCTCCGCGACTACCC
CTTCTTCCTCGCCCAGCTCGCCACGTTCGGCTATGTGGTTGTCTATTTCTCGATCCTGTA
TCTTCGCCATCAAGCTGGCATTGTCACTGATGAGATGCTGTCTCTACCACAAAAACCTTT
TCTGGCTGTAGGCCTCTTGGAGGCTTTATCAGCAGCATCAGGGATGGCTGCTGGAGCCGT
TCTTTCTGGGGCTTCGATACCAATACTGTCACAGACGTATCTTGTTTGGCAGCTTCTTTT
ATCTGCTATTTTTTTGAAGAGGCGCTATAGAATAAATGAGATAACTGGATGCTTTCTTGT
GACGGTTGGCGTAATAATAACTGTAGCAAGTGGATCTAGTGCTGGTGCTTCATTAAAAGG
TACTGGAATTTTGTGGCCACTGCTCATGATAATATCGTTCTTTCTCCAAGCCGCTGATAC
AGTATTGAAGGAGATAATATTTCTGAATGCTGCCAAGAAATTGAAGGGTGGCTCGGTTGA
TCTTTTTGTCGTCAACTCATATGGCTCTGCTTATCAAGCTCTTTTCATGTGTCTCTTGTT
GCCATTCTTGTCAAAGTTATGGGGAGTGCCATTCCATCAACTACCAACATACGTCAGAGA
TGGCACCGCCTGCTTTCTGAACATGGGATCACTATCTTCTGGCTGTGAAGGGGCACCACT
ATTACCACTACTATTTGTGTTTGGTTAATATGGGCTTCAATAT

consensusID : consensus_8594#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 568
fasta sequence

                              [ACATGCCCTTCAATCTTCTGGCTGTGAAGGGGCACCACTATTACCACTACTATTTGTGTTGGTTAATATGCGGCTTCAATATATCACTTCTACACTTACTAAAGATTTCTTCAGCAGTTGTATCTTCTCTGGCCTCTACATTTTCAGTTCCACTGTCCATCTACGCCTTCACCCTACCGTTGCCGTACATCGGTGTGGCGTCTACTCTCCCTCCTGGCTTTGTTGCAGGCGCCATGTCTTCACAACCATGGTTCATATATATAGGCTTGAGGCATGGTTCATATAGGCTTGAGGTAGAACAGAAGTTCTCCTGAGGAACCGGCCATCTGCCTGCTGTTGCATACTGTATCATATATCACACGAGTAAACTCCTACCCAATAAGTGTGAGGAAATGCCACACGGATAAGGAATAAGACTCAAAAGAAGGTACCTGATCAACCATCAGGCGTTCTTATTCTGATGTTACTGACTGAAGTTGGGGGATGCCAGTACAGTTTCTAGACGGGACAAGAACCAGGGAGAAAAGAAGGAGCATCATCACGACGGGGATGAAGAGCAAGAATGGCG]

[+] EMBL CB652139             [ACATGCCCTTCAATCTTCTGGCTGTGAAGGGGCACCACTATTACCACTACTATTTGTGTTGGTTAATATGCGGCTTCAATATATCACTTCTACACTTACTAAAGATTTCTTCAGCAGTTGTATCTTCTCTGGCCTCTACATTTTCAGTTCCACTGTCCATCTACGCCTTCACCCTACCGTTGCCGTACATCGGTGTGGCGTCTACTCTCCCTCCTGGCTTTGTTGCAGGCGCCATGTCTTCACAACCATGGTTCATATATATAGGCTTGAGGCATGGTTCATATAGGCTTGAGGTAGAACAGAAGTTCTCCTGAGGAACCGGCCATCTGCCTGCTGTTGCATACTGTATCATATATCACACGAGTAAACTCCTACCCAATAAGTGTGAGGAAATGCCACACGGATAAGGAATAAGACTCAAAAGAAGGTACCTGATCAACCATCAGGCGTTCTTATTCTGATGTTACTGACTGAAGTTGGGGGATGCCAGTACAGTTTCTAGACGGGACAAGAACCAGGGAGAAAAGAAGGAGCATCATCACGACGGGGATGAAGAGCAAGAATGGCG]




>consensus_8594#1
ACATGCCCTTCAATCTTCTGGCTGTGAAGGGGCACCACTATTACCACTACTATTTGTGTT
GGTTAATATGCGGCTTCAATATATCACTTCTACACTTACTAAAGATTTCTTCAGCAGTTG
TATCTTCTCTGGCCTCTACATTTTCAGTTCCACTGTCCATCTACGCCTTCACCCTACCGT
TGCCGTACATCGGTGTGGCGTCTACTCTCCCTCCTGGCTTTGTTGCAGGCGCCATGTCTT
CACAACCATGGTTCATATATATAGGCTTGAGGCATGGTTCATATAGGCTTGAGGTAGAAC
AGAAGTTCTCCTGAGGAACCGGCCATCTGCCTGCTGTTGCATACTGTATCATATATCACA
CGAGTAAACTCCTACCCAATAAGTGTGAGGAAATGCCACACGGATAAGGAATAAGACTCA
AAAGAAGGTACCTGATCAACCATCAGGCGTTCTTATTCTGATGTTACTGACTGAAGTTGG
GGGATGCCAGTACAGTTTCTAGACGGGACAAGAACCAGGGAGAAAAGAAGGAGCATCATC
ACGACGGGGATGAAGAGCAAGAATGGCG

consensusID : consensus_8594#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 418
fasta sequence

                              [CCACGCGTCCGATACAGTATGCAACAGCAGGCAGATGGCCGGTTCCTCCAGGAGAACTTCTNGTTCTACCTCAAGCCTATATGAACCATGCCTCAAGCCTATATATATGANCCATGGTTGTGAAGACTGGGAAGAAAAAAAATGAACAAATGAATGTTAGCTAGGAATTCCTGCTGGTGAAGGATTTCCAGGATTTTTTTGTGCCTGTGGAAAGCTGTAGAGTAGTAGGCCGGCGGTCAGCACCATGGCGCCTGCAACAAAGCCAGGAGGGAGAGTAGACGCCACACCGATGTACGGCAACGGTAGGGTGAAGGCGTAGATGGACAGTGGAACTGCATGCACCAAGAAATTTAGGCATCAGAAATGATTATAGTTCTCTCTGCAGGTCTGCAGTTTACATTTATTAATATTTAAAAAA]

[+] EMBL AU031256             [CCACGCGTCCGATACAGTATGCAACAGCAGGCAGATGGCCGGTTCCTCCAGGAGAACTTCTNGTTCTACCTCAAGCCTATATGAACCATGCCTCAAGCCTATATATATGANCCATGGTTGTGAAGACTGGGAAGAAAAAAAATGAACAAATGAATGTTAGCTAGGAATTCCTGCTGGTGAAGGATTTCCAGGATTTTTTTGTGCCTGTGGAAAGCTGTAGAGTAGTAGGCCGGCGGTCAGCACCATGGCGCCTGCAACAAAGCCAGGAGGGAGAGTAGACGCCACACCGATGTACGGCAACGGTAGGGTGAAGGCGTAGATGGACAGTGGAACTGCATGCACCAAGAAATTTAGGCATCAGAAATGATTATAGTTCTCTCTGCAGGTCTGCAGTTTACATTTATTAATATTTAAAAAA]




>consensus_8594#2
CCACGCGTCCGATACAGTATGCAACAGCAGGCAGATGGCCGGTTCCTCCAGGAGAACTTC
TNGTTCTACCTCAAGCCTATATGAACCATGCCTCAAGCCTATATATATGANCCATGGTTG
TGAAGACTGGGAAGAAAAAAAATGAACAAATGAATGTTAGCTAGGAATTCCTGCTGGTGA
AGGATTTCCAGGATTTTTTTGTGCCTGTGGAAAGCTGTAGAGTAGTAGGCCGGCGGTCAG
CACCATGGCGCCTGCAACAAAGCCAGGAGGGAGAGTAGACGCCACACCGATGTACGGCAA
CGGTAGGGTGAAGGCGTAGATGGACAGTGGAACTGCATGCACCAAGAAATTTAGGCATCA
GAAATGATTATAGTTCTCTCTGCAGGTCTGCAGTTTACATTTATTAATATTTAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8594#0      CGCTGGGCTCTGGAGGAGCGCCGGGATGGAGGTGGCAATCGCCACCGCGGCGGTCGTGGC 60
consensus_8594#1      ------------------------------------------------------------
consensus_8594#2      ------------------------------------------------------------
                                                                                  

consensus_8594#0      CATGGGTACGGGGAACCGCGTCCTCTACAAGCTCGCCCTCGTGCCGCTCCGCGACTACCC 120
consensus_8594#1      ------------------------------------------------------------
consensus_8594#2      ------------------------------------------------------------
                                                                                  

consensus_8594#0      CTTCTTCCTCGCCCAGCTCGCCACGTTCGGCTATGTGGTTGTCTATTTCTCGATCCTGTA 180
consensus_8594#1      ------------------------------------------------------------
consensus_8594#2      ------------------------------------------------------------
                                                                                  

consensus_8594#0      TCTTCGCCATCAAGCTGGCATTGTCACTGATGAGATGCTGTCTCTACCACAAAAACCTTT 240
consensus_8594#1      ACATGCCCTTCAATCTT---CTGGCTGTGAAGGGGCACCACTATTACCACTACTATTTGT 57
consensus_8594#2      ------------------------------------------------------------
                                                                                  

consensus_8594#0      TCTGGCTG-TAGGCCTCTTGGAGGCTTTA--TCAGCAGC---ATCAGGGATGGCTGCTGG 294
consensus_8594#1      GTTGGTTAATATGCGGCTTCAATATATCACTTCTACACTT--ACTAAAGATTTCTTCAGC 115
consensus_8594#2      --------CCACGCGTCCGATACAGTATGCAACAGCAGGCAGATGGCCGGTTCCTCCAGG 52
                                * **  *    *          *  **     *     * *  ** * * 

consensus_8594#0      AGCCGTTCTTTCTGGGGCTTCGATACCAATACTGTCACAGACGTATCTTGTTTGGCAGCT 354
consensus_8594#1      AGTTGTATCTTCTCTGGCCTCTACATTTTCAGTTCCAC----------TGTCCATCTACG 165
consensus_8594#2      AGAACTTCTNGTTCTA-CCTCAAGCCTATATGAACCA-----------TGCCTCAAGCCT 100
                      **   *      *    * ** *            **           **        * 

consensus_8594#0      TCTTTTATCTGCTATTTTTTTGAAGAGGCGCTATAGAATAAATGAGATAACTGGATGCTT 414
consensus_8594#1      CCTTCACCCTACCGTTGCCGTACATCGGTGT-----GGCGTCTACTCTCCCTCCTGGCTT 220
consensus_8594#2      ATATATATGANCCATGGTTGTGAAGACTGGGAAGAAAAAAAATGA-ACAAATGAATGTTA 159
                         *       *  *     *  *     *            *        *    * * 

consensus_8594#0      TCTTGTGACGGTTGGCGTAATAATAACTGTAGCAAGTGGATCTAGTGCTGGTGCTTCATT 474
consensus_8594#1      TGTTGCAGGCGCCA-TGTCTTCACAACCATGGTTCATATATATAGGCTTGAGGCATGGTT 279
consensus_8594#2      GCTAGGAATTCCTGCTGGTGAAGGATTTCCAGGATTT---TTTTGTGCCTGTGGAAAGCT 216
                        * *           *       *      *    *   * * *       *      *

consensus_8594#0      AAAAGGTACTGGAATTTTGTGGCCACTGCTCATGATAATATCGTTCTTTCTCCAAGCCGC 534
consensus_8594#1      CATATAGGCTTGAGGTAGAACAGAAGTTCTCCTGAGGA-ACCGGCCAT-CTGCCTGCTGT 337
consensus_8594#2      GTAGAGTAGT--AGGCCGGCGGTCAGCAC-CATGGCGCCTGCAACAAAGCCAGGAGGGAG 273
                               *  *           *   * * **       *       *     *    

consensus_8594#0      TG-ATACAGTATTGAAGGAGATAATATTTCTGAATGCTGCCAAGAAATTGAAGGGTGGCT 593
consensus_8594#1      TGCATACTGTATCATATATCACACGAGT--AAACTCCTACCCAATAAGTGTGAGGAAATG 395
consensus_8594#2      AGTAGACGCCACACCGATGTACGGCAAC----GGTAGGGTGAAGGCGTAGATGGACAGTG 329
                       * * **   *         *    *        *       *      *   *      

consensus_8594#0      CGGTTGATCTTTTTGTCGTCA-ACTCATATGGCTCTGCTT-ATCAAGCTCTTTTCATGTG 651
consensus_8594#1      CCAC--ACGGATAAGGAATAAGACTCAAAAGAAGGTACCTGATCAACCATCAGGCGTTCT 453
consensus_8594#2      GAAC---TGCATGCACCAAGAAATTTAGGCATCAGAAATGATTATAGTTCTCTCTGCAGG 386
                                 *        * * * *               *  *              

consensus_8594#0      TCTCTTGTTGCCATTCTTGTCAAAGTTATGGGGAGTGCCATTCCATCAACTACCAACATA 711
consensus_8594#1      TATTCTGATGTTA--CTGACTGAAGT--TGGGGGATGCCAGTACAGTTTCTA-------- 501
consensus_8594#2      TCTGCAGTTTACA--TTTATTAATATT-TAAAAAA------------------------- 418
                      * *   * *   *   *     *  *  *                               

consensus_8594#0      CGTCAGAGATGGCACCGCCTGCTTTCTGAACATGGGATCACTATCTTCTGGCTGTGAAGG 771
consensus_8594#1      -GACGGGACAAGAACCAGG--------GAGAAAAGAAGGAGCATCATCACGACGGGGATG 552
consensus_8594#2      ------------------------------------------------------------
                                                                                  

consensus_8594#0      GGCACCACTATTACCACTACTATTTGTGTTTGGTTAATATGGGCTTCAATAT 823
consensus_8594#1      AAGAGCAAGAATGGCG------------------------------------ 568
consensus_8594#2      ----------------------------------------------------