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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8598#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1033 fasta sequence
[ATTGGTNTTCACCNTCAGGTTAGCCTTAAGATAATAATATGGTAGAGTATAAATAAAGTTTAGTTTATCCATGACCTAACTTNNGGGGTGGCTAGCTTGAGGACAACCATGTAAAAATTAGGTCCAAATNTACGACATGCTAAAGGACGACNTATTCTGCAATAAAAAATNGANTAAAATAAAACCTTAACAAGCAGAAATGTTATAGCAANTCAA-TACAAATTTTAGTAACATATT---ATAATTCATACAGGNCTGATTGCATGGAATAAATTAGTCAGCCCTACGCCTGCGTATCTTC-AATTCTCCATGTCTACTTGACAACTTCATCAAGTCATAAACATGGCTTCATATAGTGATACCATCTAAGTATATTTGCCTAATTTACATACAAACCATTTAAGTTCTCTTTTAACACCACCTATATGATACAAGCTTGGCTAGCTTAGCCAGTTTTGCTACGAGGAACTGCATGACAAACCAAAGGTTTCTTCATCTCCATAGAAAGACGGAGGCACTCCGTAAGTTTAACCGGCTGAGCCGGTGACCACTTATACTCTTGCAACATCCGGCCAAACCATAGATAGGAAGTGGAGAGACCCATCATCCGTCCAGGGCACACCCGACGACCTGATCCAAACGGTGCCAACCTCAAATCTGATCCCAACACATTGATATCCTCTTCCATAAACCTTTCGGGTCGAAACACCCATGGGTCACCCCATATCGTCTCATCATGCGATATGGCCCACATATTCACCATTGCCGTAGTCCCCGCGGGTACTAGGTGCTTGCCCACATAGGTATCATGCACCGCCAAGCGGGCCCATGAGAGAAGTGGGCCAGGCGGGTGCATGCGGAGAGTTTCCTTGATGACACAATGGAGGAAGCGAAGGCTGGGGATGTCCGAGTCGGTCATGGGCCGGTGGCACACCGCCCTATCTAGTTCTTCTTGCACCTTGGACTGGATGTCTGGGTGGAGTACCATCCGGGCCATGGCCCATTCCAGGAGTATTGCACTACATCTGTCCCACGA]
[-] EMBL AA753214 [ATTGGTNTTCACCNTCAGGTTAGCCTTAAGATAATAATATGGTAGAGTATAAATAAAGTTTAGTTTATCCATGACCTAACTTNNGGGGTGGCTAGCTTGAGGACAACCATGTAAAAATTAGGTCCAAATNTACGACATGCTAAAGGACGACNTATTCTGCAATAAAAAATNGANTAAAATAAAACCTTAACAAGCAGAAATGTTATAGCAANTCAAGTACAAATTTTAGTAACATATTATAATAATTCATACAGGNCTGATTGCATGGAATAAATTAGTCAGCCCTACGCCTGCGTATCTTCTAATTCTCCATGTCTACTNGACAANTTCATAAAGTCAAAAACATGGCTTCACATAGTGATACCATCTctcca ]
[+] EMBL CB618435 [ t ccttttTTTTAGTAACATATT ATAATTCATACAGGGCTGATTGCATGGAATAAATTAGTCAGCCCTACGCCTGCGTATCTTC AATTCTCCATGTCTACTTGACAACTTCATCAAGTCATAAACATGGCTTCATATAGTGATACCATCTAAGTATATTTGCCTAATTTACATACAAACCATTTAAGTTCTCTTTTAACACCACCTATATGATACAAGCTTGGCTAGCTTAGCCAGTTTTGCTACGAGGAACTGCATGACAAACCAAAGGTTTCTTCATCTCCATAAAAAGACGGAGGCACTCCGTAAGTTTAACCGGCTGAGCCGGTGACCACTTATACTCTTGCAACATCCGGCCAAACCATAGATAGGAAGTGGAGAGACCCATCATCCGTCCAGGGCACACCCGACGACCTGATCCAAACGGTGCCAACCTCAAATCTGATCCCAACACATTGATATCCTCTTCCATAAACCTTTCGGGTCGAAACACCCATGGGTCACCCCATATCGTCTCATCATGCGATATGGCCCACATATTCACCATTGCCGTAGTCCCCGCGGGTACTAGGTGCTTGCCCACATAGGTATCATGCACCGCCAAGCGGGCCCATGAGAGAAGTGGGCCAGGCGGGTGCATGCGGAGAGTTTCCTTGATGACACAATGGAGGAAGCGAAGGCTGGGGATGTCCGAGTCGGTCATGGGCCGGTGGCACA ]
[+] EMBL CB618477 [ CCTGCGTATCTTC AATTCTCCATGTCTACTTGACAACTTCATCAACCCATAAACATGGCTTCATATAGTGATACCATCTAAGTATATTTGCCTAATTTACATACAAACCATTTAAGTTCTCTTTTAACACCACCTATATGATACAAGCTTGGCTAGCTTAGCCAGTTTTGCTACGAGGAACTGCATGACAAACCAAAGGTTTCTTCATCTCCATAGAAAGACGGAGGCACTCCGTAAGTTTAACCGGCTGAGCCGGTGACCACTTATACTCTTGCAACATCCGGCCAAACCATAGATAGGAAGTGGAGAGACCCATCATCCGTCCAGGGCACACCCGACGACCTGATCCAAACGGTGCCAACCTCAAATCTGATCCCAACACATTGATATCCTCTTCCATAAACCTTTCGGGTCGAAACACCCATGGGTCACCCCATATCGTCTCATCATGCGATATGGCCCACATATTCACCATTGCCGTAGTCCCCGCGGGTACTAGGTGCTTGCCCACATAGGTATCATGCACCGCCAAGCGGGCCCATGAGAGAAGTGGGCCAGGCGGGTGCATGCGGAGAGTTTCCTTGATGACACAATGGAGGAAGCGAAGGCTGGGGATGTCCGAGTCGGTC ]
[+] EMBL CA759862 [ tttttttTATAGTGATACCATCTAAGTATATTTGCCTAATTTACATACAAACCATTTAAGTTCTCTTTTAACACCACCTATATGATACAAGCTTGGCTAGCTTAGCCAGTTTTGCTACGAGGAACTGCATGACAAACCAAAGGTTTCTTCATCTCCATAGAAAGACGGAGGCACTCCGTAAGTTTAACCGGCTGAGCCGGTGACCACTTATACTCTTGCAACATCCGGCCAAACCATAGATAGGAAGTGGAGAGACCCATCATCCGTCCAGGGCACACCCGACGACCTGATCCAAACGGTGCCAACCTCAAATCTGATCCCAACACATTGATATCCTCTTCCATAAACCTTTCGGGTCGAAACACCCATGGGTCACCCCATATCGTCTCATCATGCGATATGGCCCACATATTCACCATTGCCGTAGTCCCCGCGGGTACTAGGTGCTTGCCCACATAGGTATCATGCACCGCCNAGCGGGCCCATGAGAGAAGTGGGCCAGGCGGGTGCATGCGGAGAGTTTCCTTGATGACACAATGGAGGAAGCGAAGGCTGGGGATGTCCGAGTCGGTCATGGGCCGGTGGCCCACCGCCCTATCTAGTTCTTCTTGCACCTTGGACTGGATGTCTGGGTGGAGTACCATCCGGGCCATGGCCCATTCCAGGAGTATTGCACTACATCTGTCCCACGA]
consensusID : consensus_8598#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 366 fasta sequence
[ACGCCTGNGTATTTTNTAATTCTCCATGTNTACTTGACAACTTNATCAAGTCAAAAACATGGCTTCACATAGTGATACCATNTAAGTATATTTGCCTAATTTACANACAAACCATTTAAGTTNTNTTTTAACACCACCTATATGATACAAGCTTGGCTAGCTTAGCCAGTTTTGNTACGAGGAACTGCATGACAAACCAAAGGTTTNTTCATCTCCATAGAAAGACGGAGGCACTCCGTAAGTTTAACCGGCTGAGCCGCTGCCCACTTATACTCTTGCAACATCCGGCCAAACCATAGATAGGCAGTGGAGAGACCCATCATCCGTCCAGGGCACACCTNTCTGCTGATGAAGAGCACGGNGAGG]
[-] EMBL AA751892 [ACGCCTGNGTATTTTNTAATTCTCCATGTNTACTTGACAACTTNATCAAGTCAAAAACATGGCTTCACATAGTGATACCATNTAAGTATATTTGCCTAATTTACANACAAACCATTTAAGTTNTNTTTTAACACCACCTATATGATACAAGCTTGGCTAGCTTAGCCAGTTTTGNTACGAGGAACTGCATGACAAACCAAAGGTTTNTTCATCTCCATAGAAAGACGGAGGCACTCCGTAAGTTTAACCGGCTGAGCCGCTGCCCACTTATACTCTTGCAACATCCGGCCAAACCATAGATAGGCAGTGGAGAGACCCATCATCCGTCCAGGGCACACCTNTCTGCTGATGAAGAGCACGGNGAGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8598#0 ATTGGTNTTCACCNTCAGGTTAGCCTTAAGATAATAATATGGTAGAGTATAAATAAAGTT 60
consensus_8598#1 ------------------------------------------------------------
consensus_8598#0 TAGTTTATCCATGACCTAACTTNNGGGGTGGCTAGCTTGAGGACAACCATGTAAAAATTA 120
consensus_8598#1 ------------------------------------------------------------
consensus_8598#0 GGTCCAAATNTACGACATGCTAAAGGACGACNTATTCTGCAATAAAAAATNGANTAAAAT 180
consensus_8598#1 ------------------------------------------------------------
consensus_8598#0 AAAACCTTAACAAGCAGAAATGTTATAGCAANTCAATACAAATTTTAGTAACATATTATA 240
consensus_8598#1 ------------------------------------------------------------
consensus_8598#0 ATTCATACAGGNCTGATTGCATGGAATAAATTAGTCAGCCCTACGCCTGCGTATCTTC-A 299
consensus_8598#1 ------------------------------------------ACGCCTGNGTATTTTNTA 18
******* **** ** *
consensus_8598#0 ATTCTCCATGTCTACTTGACAACTTCATCAAGTCATAAACATGGCTTCATATAGTGATAC 359
consensus_8598#1 ATTCTCCATGTNTACTTGACAACTTNATCAAGTCAAAAACATGGCTTCACATAGTGATAC 78
*********** ************* ********* ************* **********
consensus_8598#0 CATCTAAGTATATTTGCCTAATTTACATACAAACCATTTAAGTTCTCTTTTAACACCACC 419
consensus_8598#1 CATNTAAGTATATTTGCCTAATTTACANACAAACCATTTAAGTTNTNTTTTAACACCACC 138
*** *********************** **************** * *************
consensus_8598#0 TATATGATACAAGCTTGGCTAGCTTAGCCAGTTTTGCTACGAGGAACTGCATGACAAACC 479
consensus_8598#1 TATATGATACAAGCTTGGCTAGCTTAGCCAGTTTTGNTACGAGGAACTGCATGACAAACC 198
************************************ ***********************
consensus_8598#0 AAAGGTTTCTTCATCTCCATAGAAAGACGGAGGCACTCCGTAAGTTTAACCGGCTGAGCC 539
consensus_8598#1 AAAGGTTTNTTCATCTCCATAGAAAGACGGAGGCACTCCGTAAGTTTAACCGGCTGAGCC 258
******** ***************************************************
consensus_8598#0 GGTGACCACTTATACTCTTGCAACATCCGGCCAAACCATAGATAGGAAGTGGAGAGACCC 599
consensus_8598#1 GCTGCCCACTTATACTCTTGCAACATCCGGCCAAACCATAGATAGGCAGTGGAGAGACCC 318
* ** ***************************************** *************
consensus_8598#0 ATCATCCGTCCAGGGCACACCCGACGACCTGATCCAAACGGTGCCAACCTCAAATCTGAT 659
consensus_8598#1 ATCATCCGTCCAGGGCACACCTNTCTGC-TGATGAAGAGCACGGNGAGG----------- 366
********************* * * **** * * * *
consensus_8598#0 CCCAACACATTGATATCCTCTTCCATAAACCTTTCGGGTCGAAACACCCATGGGTCACCC 719
consensus_8598#1 ------------------------------------------------------------
consensus_8598#0 CATATCGTCTCATCATGCGATATGGCCCACATATTCACCATTGCCGTAGTCCCCGCGGGT 779
consensus_8598#1 ------------------------------------------------------------
consensus_8598#0 ACTAGGTGCTTGCCCACATAGGTATCATGCACCGCCAAGCGGGCCCATGAGAGAAGTGGG 839
consensus_8598#1 ------------------------------------------------------------
consensus_8598#0 CCAGGCGGGTGCATGCGGAGAGTTTCCTTGATGACACAATGGAGGAAGCGAAGGCTGGGG 899
consensus_8598#1 ------------------------------------------------------------
consensus_8598#0 ATGTCCGAGTCGGTCATGGGCCGGTGGCACACCGCCCTATCTAGTTCTTCTTGCACCTTG 959
consensus_8598#1 ------------------------------------------------------------
consensus_8598#0 GACTGGATGTCTGGGTGGAGTACCATCCGGGCCATGGCCCATTCCAGGAGTATTGCACTA 1019
consensus_8598#1 ------------------------------------------------------------
consensus_8598#0 CATCTGTCCCACGA 1033
consensus_8598#1 --------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||