These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8604#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 744 fasta sequence [GAAACGCCAGTTCAACTCCCAGCACGGAAACCGCCCACCAACTTTCGCCGCATGGCCGCCGGTCGCCGGGGCGGCGTCTGAGAGGGCGCCCGCGCGGCGCGCGGCGCGGGTCGGAAGCGGAGGAGGGCGATCGAGATGAGGGAGCTCGCCGGCAGCCCCGGGACGTGGAGCGGCCTCTCGCTGCGGGTGGGGCAGCTCGTCTTCGCCGCCGCGTCCGTCTGCGCCACGGCCTCCGCCCTCGGCTTCGCCGCATACACCGCCTTCTGTTACTTGATTGCATCGATGGGACTACAGGCACTCTGGAGCTTGGGACTTGCTTGCCTTGATTGCTATGCCTTGAAATTCAAGAAAGATCTCCACAGTGCTGTTCTCCTGAGCTTATTTGTTGTTGGCGACTGGGTAACAGCAATCCTGTCGTTCGCGGCATCATGCTCAGCAGCAGGTGTAGTTGTTCTCTTCGATAGGGACATATACGCTTGCAGGAATCCCCAACTCCCTTGTGGAAGATTTGAACTAGCCATAGCATGTGCTTTTCTTTCTTGGGCGTTTAGTGCCACATCTGCTCTCGTAATGTTTTGGCTCCTCGCTTCATTGTGAATAAATTTGTACAACCTCTGTCTGTAGCTCCCCTCTGTTTGATCCCTTCTCTGTATACGAACTAATTTTTGAAGACGACAACACAACAGAAGTTCTGAAATGTCATACAAGCTCCATGAACTCTGTTTCCGAGAAACTAATTGAATG] [+] EMBL AK071164 [GAAACGCCAGTTCAACTCCCAGCACGGAAACCGCCCACCAACTTTCGCCGCATGGCCGCCGGTCGCCGGGGCGGCGTCTGAGAGGGCGCCCGCGCGGCGCGCGGCGCGGGTCGGAAGCGGAGGAGGGCGATCGAGATGAGGGAGCTCGCCGGCAGCCCCGGGACGTGGAGCGGCCTCTCGCTGCGGGTGGGGCAGCTCGTCTTCGCCGCCGCGTCCGTCTGCGCCACGGCCTCCGCCCTCGGCTTCGCCGCATACACCGCCTTCTGTTACTTGATTGCATCGATGGGACTACAGGCACTCTGGAGCTTGGGACTTGCTTGCCTTGATTGCTATGCCTTGAAATTCAAGAAAGATCTCCACAGTGCTGTTCTCCTGAGCTTATTTGTTGTTGGCGACTGGGTAACAGCAATCCTGTCGTTCGCGGCATCATGCTCAGCAGCAGGTGTAGTTGTTCTCTTCGATAGGGACATATACGCTTGCAGGAATCCCCAACTCCCTTGTGGAAGATTTGAACTAGCCATAGCATGTGCTTTTCTTTCTTGGGCGTTTAGTGCCACATCTGCTCTCGTAATGTTTTGGCTCCTCGCTTCATTGTGAATAAATTTGTACAACCTCTGTCTGTAGCTCCCCTCTGTTTGATCCCTTCTCTGTATACGAACTAATTTTTGAAGACGACAACACAACAGAAGTTCTGAAATGTCATACAAGCTCCATGAACTCTGTTTCCGAGAAACTAATTGAATG] [+] EMBL AK104027 [ ACCGCCCACCAACTTTCGCCGCATGGCCGCCGGTCGCCGGGGCGGCGTCTGAGAGGGCGCCCGCGCGGCGCGCGGCGCGGGTCGGAAGCGGAGGAGGGCGATCGAGATGAGGGAGCTCGCCGGCAGCCCCGAGACGTGGAGCGGCCTCTCGCTGCGGGTGGGGCAGCTCGTCTTCGCCGCCGCGTCCGTCTGCGCCACGGCCTCCGCCCTCGGCTTCGCCGCATACACCGCCTTCTGTTACTTGATTGCATCGATGGGACTACAGGCACTCTGGAGCTTGGGACTTGCTTGCCTTGATTGCTATGCCTTGAAATTCAAGAAAGATCTCCACAGTGCTGTTCTCCTGAGCTTATTTGTTGTTGGCGACTGGGTAACAGCAATCCTGTCGTTCGCGGCATCATGCTCAGCAGCAGGTGTAGTTGTTCTCTTCGATAGGGACATATACGCTTGCAGGAATCCCCAACTCCCTTGTGGAAGATTTGAACTAGCCATAGCATGTGCTTTTCTTTCTTGGGCGTTTAGTGCCACATCTGCTCTCGTAATGTTTTGGCTCCTCGCTTCATTGTGAATAAATTTGTACAACCTCTGTCTGTAGCTCCCCTCTGTTTGATCCCTTCTCTGTATACGAACTAATTTTTGAAGACGACAACACAACAGAAGTT ] [+] EMBL CA767188 [ aggggGATGGGACTACAGGCACTCTGGAGCTTGGGACTTGCTTGCCTTGATTGCTATGCCTTGAAATTCAAGAAAGATCTCCACAGTGCTGTTCTCCTGAGCTTATTTGTTGTTGGCGACTGGGTAACAGCAATCCTGTCGTTCGCGGCATCATGCTCAGCAGCAGGTGTAGTTGTTCTCTTCGATAGGGACATATACGCTTGCAGGAATCCCCAACTCCCTTGTGGAAGATTTGAACTAGCCATAGCATGTGCTTTTCTTTCTTGGGCGTTTAGTGCCACATCTGCTCTCGTAATGTTTTGGCTCCTCGCTTCATTGTGAATAAATTTGTACAACTTCTGT ] consensusID : consensus_8604#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 566 fasta sequence [ATATNTCCCATGAACCTTGCGAATCTTCCATTACTATACACGTTTCCATCCATCTTACCGCACCATTTGAATTGGGGCATAAAGAACACTTAACACTTTTGT-CCATATCTAAACACTTTAAAGTGTGTTTTCTGATGTACTAAAGCCACAGTTGTACATGATGCAGGTAACAGCAATCCTGTCGTTCGCGGCATCATGCTCAGCAGCAGGTGTAGTTGTTCTCTTCGATAGGGACATATACGCTTGCAGGAATCCCCAACTCCCTTGTGGAAGATTTGAACTAGCCATAGCATGTGCTTTTCTTTCTTGGGCGTTTAGTGCCACATCTGCTCTCGTAATGTTTTGGCTCCTCGCTTCATTGTGAATAAATTTGTACAACTTCTGTCTGTAGCTCCCCTCTGTTTGATCCCTTCTCTGTATACGAACTAATTTTTGAAGACAACACACAGAAGTTCTGAAATGTCATACAAGCTCCATGAACTCTGTTTCCGAGAAACTAATTGAATGGGACATCTGCAGAAAATTTATGTTCCATATGCTCCAGCACGTTTCCTTCTCAAAAAAAA] [+] EMBL BM420629 [ATATNTCCCATGAACCTTGCGAATCTTCCATTACTATACACGTTTCCATCCATCTTACCGCACCATTTGAATTGGGGCATAAAGAACACTTAACACTTTTGT CCATATCTAAACACTTTAAAGTGTGTTTTCTGATGTACTAAAGCCACAGTTGTACATGATGCAGGTAACAGCAATCCTGTCGTTCGCGGCATCATGCTCAGCAGCAGGTGTAGTTGTTCTCTTCGATAGGGACATATACGCTTGCAGGAATCCCCAACTCCCTTGTGGAAGATTTGAACTAGCCATAGCATGTGCTTTTCTTTCTTGGGCGTTTAGTGCCACATCTGCTCTCGTAATGTTTTGGCTCCTCGCTTCATTGTGAATAAATTTGTACAACTTCTGTCTGTAGCTCCCCTCTGTTTGATCCCTTCTCTGTATACGAACTAATTTTTGAAGACAACACACAGAAGTTCTGAAATGTCATACAAGCTCCATGAACTCTGTTTCCGAGAAACTAATTGAATGGGACATCTGCAGAAAATTTATGTTCCATATGCTCCAGCACGTTTCCTTCTCAAAAAAAA] [+] EMBL BM420190 [ cataaAACACTTTTGTGCCATATCTAAACA TTTAAAGTGTGTTTTCTGATGTACTAAAGCCACAGTTGTACATGATGCAGGTAACAGCAATCCTGTCGTTCGCGGCATCATGCTCAGCAGCAGGTGTAGTTGTTCTCTTCGATAGGGACATATACGCTTGCAGGAATCCCCAACTCCCTTGTGGAAGATTTGAACTAGCCATAGCATGTGCTTTTCTTTCTTGGGCGTTTAGTGCCACATCTGCTCTCGTAATGTTTTGGCTCCTCGCTTCATTGTGAATAAATTTGTACAACTTCTGTCTGTAGCTCCCCTCTGTTTGATCCCTTCTCTGTATACGAACTAATTTTTGAAGAC ACACACAGAAGTTCTGAAATGTCATACAAGCTCCATGAACTCTGTTTCCGAGAAACTAATTGAATGGGACATCTGCAGAAAATTTATGTTCCATATGCTCAAGCACGTTTCCTTCTCAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8604#0 GAAACGCCAGTTCAACTCCCAGCACGGAAACCGCCCACCAACTTTCGCCGCATGGCCGCC 60 consensus_8604#1 ------------------------------------------------------------ consensus_8604#0 GGTCGCCGGGGCGGCGTCTGAGAGGGCGCCCGCGCGGCGCGCGGCGCGGGTCGGAAGCGG 120 consensus_8604#1 ------------------------------------------------------------ consensus_8604#0 AGGAGGGCGATCGAGATGAGGGAGCTCGCCGGCAGCCCCGGGACGTGGAGCGGCCTCTCG 180 consensus_8604#1 ------------------------------------------------------------ consensus_8604#0 CTGCGGGTGGGGCAGCTCGTCTTCGCCGCCGCGTCCGTCTGCGCCACGGCCTCCGCCCTC 240 consensus_8604#1 ------------------------------------ATATNTCCCATGAACCTTGCGAAT 24 * * *** * * ** consensus_8604#0 GGCTTCGCCGCATACACCGCCTTCTGTTACTTGATTGCATCGATGGGACTACAGGCACTC 300 consensus_8604#1 CTTCCATTACTATACAC-GTTTCCATCCATCTTACCGCACCATTTGAATTG-GGGCATAA 82 ****** * * * * * * *** * * * * * **** consensus_8604#0 TGGA-GCTTGGGACTTGCTTGCCTTGATTGCTATGCCTTGAAATTCAAGAAAGATCTCCA 359 consensus_8604#1 AGAACACTTAACACTT--TTGTCCATATCTAAACACTTTAAAGTGT------GTTTTCTG 134 * * *** **** *** * ** * * ** ** * * * ** consensus_8604#0 CAGTGCTGTTCTCCTGAGCTTATTTGTTGTTGGCGACTGGGTAACAGCAATCCTGTCGTT 419 consensus_8604#1 ATGTACTAAAGCCACAGTTGTACATGATGC--------AGGTAACAGCAATCCTGTCGTT 186 ** ** * ** ** ** ********************* consensus_8604#0 CGCGGCATCATGCTCAGCAGCAGGTGTAGTTGTTCTCTTCGATAGGGACATATACGCTTG 479 consensus_8604#1 CGCGGCATCATGCTCAGCAGCAGGTGTAGTTGTTCTCTTCGATAGGGACATATACGCTTG 246 ************************************************************ consensus_8604#0 CAGGAATCCCCAACTCCCTTGTGGAAGATTTGAACTAGCCATAGCATGTGCTTTTCTTTC 539 consensus_8604#1 CAGGAATCCCCAACTCCCTTGTGGAAGATTTGAACTAGCCATAGCATGTGCTTTTCTTTC 306 ************************************************************ consensus_8604#0 TTGGGCGTTTAGTGCCACATCTGCTCTCGTAATGTTTTGGCTCCTCGCTTCATTGTGAAT 599 consensus_8604#1 TTGGGCGTTTAGTGCCACATCTGCTCTCGTAATGTTTTGGCTCCTCGCTTCATTGTGAAT 366 ************************************************************ consensus_8604#0 AAATTTGTACAACCTCTGTCTGTAGCTCCCCTCTGTTTGATCCCTTCTCTGTATACGAAC 659 consensus_8604#1 AAATTTGTACAACTTCTGTCTGTAGCTCCCCTCTGTTTGATCCCTTCTCTGTATACGAAC 426 ************* ********************************************** consensus_8604#0 TAATTTTTGAAGACGACAACACAACAGAAGTTCTGAAATGTCATACAAGCTCCATGAACT 719 consensus_8604#1 TAATTTTTGAAGACAACAC----ACAGAAGTTCTGAAATGTCATACAAGCTCCATGAACT 482 ************** *** ************************************* consensus_8604#0 CTGTTTCCGAGAAACTAATTGAATG----------------------------------- 744 consensus_8604#1 CTGTTTCCGAGAAACTAATTGAATGGGACATCTGCAGAAAATTTATGTTCCATATGCTCC 542 ************************* consensus_8604#0 ------------------------ consensus_8604#1 AGCACGTTTCCTTCTCAAAAAAAA 566 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||