cluster # 8604

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Oryza sativa
cluster # 8604 cluster # 8604 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8604#0 length = 744 sequences # 3

consensus_8604#1 length = 566 sequences # 2

consensusID : consensus_8604#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 744
fasta sequence

                              [GAAACGCCAGTTCAACTCCCAGCACGGAAACCGCCCACCAACTTTCGCCGCATGGCCGCCGGTCGCCGGGGCGGCGTCTGAGAGGGCGCCCGCGCGGCGCGCGGCGCGGGTCGGAAGCGGAGGAGGGCGATCGAGATGAGGGAGCTCGCCGGCAGCCCCGGGACGTGGAGCGGCCTCTCGCTGCGGGTGGGGCAGCTCGTCTTCGCCGCCGCGTCCGTCTGCGCCACGGCCTCCGCCCTCGGCTTCGCCGCATACACCGCCTTCTGTTACTTGATTGCATCGATGGGACTACAGGCACTCTGGAGCTTGGGACTTGCTTGCCTTGATTGCTATGCCTTGAAATTCAAGAAAGATCTCCACAGTGCTGTTCTCCTGAGCTTATTTGTTGTTGGCGACTGGGTAACAGCAATCCTGTCGTTCGCGGCATCATGCTCAGCAGCAGGTGTAGTTGTTCTCTTCGATAGGGACATATACGCTTGCAGGAATCCCCAACTCCCTTGTGGAAGATTTGAACTAGCCATAGCATGTGCTTTTCTTTCTTGGGCGTTTAGTGCCACATCTGCTCTCGTAATGTTTTGGCTCCTCGCTTCATTGTGAATAAATTTGTACAACCTCTGTCTGTAGCTCCCCTCTGTTTGATCCCTTCTCTGTATACGAACTAATTTTTGAAGACGACAACACAACAGAAGTTCTGAAATGTCATACAAGCTCCATGAACTCTGTTTCCGAGAAACTAATTGAATG]

[+] EMBL AK071164             [GAAACGCCAGTTCAACTCCCAGCACGGAAACCGCCCACCAACTTTCGCCGCATGGCCGCCGGTCGCCGGGGCGGCGTCTGAGAGGGCGCCCGCGCGGCGCGCGGCGCGGGTCGGAAGCGGAGGAGGGCGATCGAGATGAGGGAGCTCGCCGGCAGCCCCGGGACGTGGAGCGGCCTCTCGCTGCGGGTGGGGCAGCTCGTCTTCGCCGCCGCGTCCGTCTGCGCCACGGCCTCCGCCCTCGGCTTCGCCGCATACACCGCCTTCTGTTACTTGATTGCATCGATGGGACTACAGGCACTCTGGAGCTTGGGACTTGCTTGCCTTGATTGCTATGCCTTGAAATTCAAGAAAGATCTCCACAGTGCTGTTCTCCTGAGCTTATTTGTTGTTGGCGACTGGGTAACAGCAATCCTGTCGTTCGCGGCATCATGCTCAGCAGCAGGTGTAGTTGTTCTCTTCGATAGGGACATATACGCTTGCAGGAATCCCCAACTCCCTTGTGGAAGATTTGAACTAGCCATAGCATGTGCTTTTCTTTCTTGGGCGTTTAGTGCCACATCTGCTCTCGTAATGTTTTGGCTCCTCGCTTCATTGTGAATAAATTTGTACAACCTCTGTCTGTAGCTCCCCTCTGTTTGATCCCTTCTCTGTATACGAACTAATTTTTGAAGACGACAACACAACAGAAGTTCTGAAATGTCATACAAGCTCCATGAACTCTGTTTCCGAGAAACTAATTGAATG]
[+] EMBL AK104027             [                             ACCGCCCACCAACTTTCGCCGCATGGCCGCCGGTCGCCGGGGCGGCGTCTGAGAGGGCGCCCGCGCGGCGCGCGGCGCGGGTCGGAAGCGGAGGAGGGCGATCGAGATGAGGGAGCTCGCCGGCAGCCCCGAGACGTGGAGCGGCCTCTCGCTGCGGGTGGGGCAGCTCGTCTTCGCCGCCGCGTCCGTCTGCGCCACGGCCTCCGCCCTCGGCTTCGCCGCATACACCGCCTTCTGTTACTTGATTGCATCGATGGGACTACAGGCACTCTGGAGCTTGGGACTTGCTTGCCTTGATTGCTATGCCTTGAAATTCAAGAAAGATCTCCACAGTGCTGTTCTCCTGAGCTTATTTGTTGTTGGCGACTGGGTAACAGCAATCCTGTCGTTCGCGGCATCATGCTCAGCAGCAGGTGTAGTTGTTCTCTTCGATAGGGACATATACGCTTGCAGGAATCCCCAACTCCCTTGTGGAAGATTTGAACTAGCCATAGCATGTGCTTTTCTTTCTTGGGCGTTTAGTGCCACATCTGCTCTCGTAATGTTTTGGCTCCTCGCTTCATTGTGAATAAATTTGTACAACCTCTGTCTGTAGCTCCCCTCTGTTTGATCCCTTCTCTGTATACGAACTAATTTTTGAAGACGACAACACAACAGAAGTT                                                     ]
[+] EMBL CA767188             [                                                                                                                                                                                                                                                                                    aggggGATGGGACTACAGGCACTCTGGAGCTTGGGACTTGCTTGCCTTGATTGCTATGCCTTGAAATTCAAGAAAGATCTCCACAGTGCTGTTCTCCTGAGCTTATTTGTTGTTGGCGACTGGGTAACAGCAATCCTGTCGTTCGCGGCATCATGCTCAGCAGCAGGTGTAGTTGTTCTCTTCGATAGGGACATATACGCTTGCAGGAATCCCCAACTCCCTTGTGGAAGATTTGAACTAGCCATAGCATGTGCTTTTCTTTCTTGGGCGTTTAGTGCCACATCTGCTCTCGTAATGTTTTGGCTCCTCGCTTCATTGTGAATAAATTTGTACAACTTCTGT                                                                                                                              ]




>consensus_8604#0
GAAACGCCAGTTCAACTCCCAGCACGGAAACCGCCCACCAACTTTCGCCGCATGGCCGCC
GGTCGCCGGGGCGGCGTCTGAGAGGGCGCCCGCGCGGCGCGCGGCGCGGGTCGGAAGCGG
AGGAGGGCGATCGAGATGAGGGAGCTCGCCGGCAGCCCCGGGACGTGGAGCGGCCTCTCG
CTGCGGGTGGGGCAGCTCGTCTTCGCCGCCGCGTCCGTCTGCGCCACGGCCTCCGCCCTC
GGCTTCGCCGCATACACCGCCTTCTGTTACTTGATTGCATCGATGGGACTACAGGCACTC
TGGAGCTTGGGACTTGCTTGCCTTGATTGCTATGCCTTGAAATTCAAGAAAGATCTCCAC
AGTGCTGTTCTCCTGAGCTTATTTGTTGTTGGCGACTGGGTAACAGCAATCCTGTCGTTC
GCGGCATCATGCTCAGCAGCAGGTGTAGTTGTTCTCTTCGATAGGGACATATACGCTTGC
AGGAATCCCCAACTCCCTTGTGGAAGATTTGAACTAGCCATAGCATGTGCTTTTCTTTCT
TGGGCGTTTAGTGCCACATCTGCTCTCGTAATGTTTTGGCTCCTCGCTTCATTGTGAATA
AATTTGTACAACCTCTGTCTGTAGCTCCCCTCTGTTTGATCCCTTCTCTGTATACGAACT
AATTTTTGAAGACGACAACACAACAGAAGTTCTGAAATGTCATACAAGCTCCATGAACTC
TGTTTCCGAGAAACTAATTGAATG

consensusID : consensus_8604#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 566
fasta sequence

                              [ATATNTCCCATGAACCTTGCGAATCTTCCATTACTATACACGTTTCCATCCATCTTACCGCACCATTTGAATTGGGGCATAAAGAACACTTAACACTTTTGT-CCATATCTAAACACTTTAAAGTGTGTTTTCTGATGTACTAAAGCCACAGTTGTACATGATGCAGGTAACAGCAATCCTGTCGTTCGCGGCATCATGCTCAGCAGCAGGTGTAGTTGTTCTCTTCGATAGGGACATATACGCTTGCAGGAATCCCCAACTCCCTTGTGGAAGATTTGAACTAGCCATAGCATGTGCTTTTCTTTCTTGGGCGTTTAGTGCCACATCTGCTCTCGTAATGTTTTGGCTCCTCGCTTCATTGTGAATAAATTTGTACAACTTCTGTCTGTAGCTCCCCTCTGTTTGATCCCTTCTCTGTATACGAACTAATTTTTGAAGACAACACACAGAAGTTCTGAAATGTCATACAAGCTCCATGAACTCTGTTTCCGAGAAACTAATTGAATGGGACATCTGCAGAAAATTTATGTTCCATATGCTCCAGCACGTTTCCTTCTCAAAAAAAA]

[+] EMBL BM420629             [ATATNTCCCATGAACCTTGCGAATCTTCCATTACTATACACGTTTCCATCCATCTTACCGCACCATTTGAATTGGGGCATAAAGAACACTTAACACTTTTGT CCATATCTAAACACTTTAAAGTGTGTTTTCTGATGTACTAAAGCCACAGTTGTACATGATGCAGGTAACAGCAATCCTGTCGTTCGCGGCATCATGCTCAGCAGCAGGTGTAGTTGTTCTCTTCGATAGGGACATATACGCTTGCAGGAATCCCCAACTCCCTTGTGGAAGATTTGAACTAGCCATAGCATGTGCTTTTCTTTCTTGGGCGTTTAGTGCCACATCTGCTCTCGTAATGTTTTGGCTCCTCGCTTCATTGTGAATAAATTTGTACAACTTCTGTCTGTAGCTCCCCTCTGTTTGATCCCTTCTCTGTATACGAACTAATTTTTGAAGACAACACACAGAAGTTCTGAAATGTCATACAAGCTCCATGAACTCTGTTTCCGAGAAACTAATTGAATGGGACATCTGCAGAAAATTTATGTTCCATATGCTCCAGCACGTTTCCTTCTCAAAAAAAA]
[+] EMBL BM420190             [                                                                                      cataaAACACTTTTGTGCCATATCTAAACA TTTAAAGTGTGTTTTCTGATGTACTAAAGCCACAGTTGTACATGATGCAGGTAACAGCAATCCTGTCGTTCGCGGCATCATGCTCAGCAGCAGGTGTAGTTGTTCTCTTCGATAGGGACATATACGCTTGCAGGAATCCCCAACTCCCTTGTGGAAGATTTGAACTAGCCATAGCATGTGCTTTTCTTTCTTGGGCGTTTAGTGCCACATCTGCTCTCGTAATGTTTTGGCTCCTCGCTTCATTGTGAATAAATTTGTACAACTTCTGTCTGTAGCTCCCCTCTGTTTGATCCCTTCTCTGTATACGAACTAATTTTTGAAGAC ACACACAGAAGTTCTGAAATGTCATACAAGCTCCATGAACTCTGTTTCCGAGAAACTAATTGAATGGGACATCTGCAGAAAATTTATGTTCCATATGCTCAAGCACGTTTCCTTCTCAAAAAAAA]




>consensus_8604#1
ATATNTCCCATGAACCTTGCGAATCTTCCATTACTATACACGTTTCCATCCATCTTACCG
CACCATTTGAATTGGGGCATAAAGAACACTTAACACTTTTGTCCATATCTAAACACTTTA
AAGTGTGTTTTCTGATGTACTAAAGCCACAGTTGTACATGATGCAGGTAACAGCAATCCT
GTCGTTCGCGGCATCATGCTCAGCAGCAGGTGTAGTTGTTCTCTTCGATAGGGACATATA
CGCTTGCAGGAATCCCCAACTCCCTTGTGGAAGATTTGAACTAGCCATAGCATGTGCTTT
TCTTTCTTGGGCGTTTAGTGCCACATCTGCTCTCGTAATGTTTTGGCTCCTCGCTTCATT
GTGAATAAATTTGTACAACTTCTGTCTGTAGCTCCCCTCTGTTTGATCCCTTCTCTGTAT
ACGAACTAATTTTTGAAGACAACACACAGAAGTTCTGAAATGTCATACAAGCTCCATGAA
CTCTGTTTCCGAGAAACTAATTGAATGGGACATCTGCAGAAAATTTATGTTCCATATGCT
CCAGCACGTTTCCTTCTCAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8604#0      GAAACGCCAGTTCAACTCCCAGCACGGAAACCGCCCACCAACTTTCGCCGCATGGCCGCC 60
consensus_8604#1      ------------------------------------------------------------
                                                                                  

consensus_8604#0      GGTCGCCGGGGCGGCGTCTGAGAGGGCGCCCGCGCGGCGCGCGGCGCGGGTCGGAAGCGG 120
consensus_8604#1      ------------------------------------------------------------
                                                                                  

consensus_8604#0      AGGAGGGCGATCGAGATGAGGGAGCTCGCCGGCAGCCCCGGGACGTGGAGCGGCCTCTCG 180
consensus_8604#1      ------------------------------------------------------------
                                                                                  

consensus_8604#0      CTGCGGGTGGGGCAGCTCGTCTTCGCCGCCGCGTCCGTCTGCGCCACGGCCTCCGCCCTC 240
consensus_8604#1      ------------------------------------ATATNTCCCATGAACCTTGCGAAT 24
                                                           * *   *** *  *   **    

consensus_8604#0      GGCTTCGCCGCATACACCGCCTTCTGTTACTTGATTGCATCGATGGGACTACAGGCACTC 300
consensus_8604#1      CTTCCATTACTATACAC-GTTTCCATCCATCTTACCGCACCATTTGAATTG-GGGCATAA 82
                                 ****** *  * *    *  * *  *** *  * * * *   ****   

consensus_8604#0      TGGA-GCTTGGGACTTGCTTGCCTTGATTGCTATGCCTTGAAATTCAAGAAAGATCTCCA 359
consensus_8604#1      AGAACACTTAACACTT--TTGTCCATATCTAAACACTTTAAAGTGT------GTTTTCTG 134
                       * *  ***   ****  *** *   **    *  * ** ** *        * * **  

consensus_8604#0      CAGTGCTGTTCTCCTGAGCTTATTTGTTGTTGGCGACTGGGTAACAGCAATCCTGTCGTT 419
consensus_8604#1      ATGTACTAAAGCCACAGTTGTACATGATGC--------AGGTAACAGCAATCCTGTCGTT 186
                        ** **     *       **  ** **          *********************

consensus_8604#0      CGCGGCATCATGCTCAGCAGCAGGTGTAGTTGTTCTCTTCGATAGGGACATATACGCTTG 479
consensus_8604#1      CGCGGCATCATGCTCAGCAGCAGGTGTAGTTGTTCTCTTCGATAGGGACATATACGCTTG 246
                      ************************************************************

consensus_8604#0      CAGGAATCCCCAACTCCCTTGTGGAAGATTTGAACTAGCCATAGCATGTGCTTTTCTTTC 539
consensus_8604#1      CAGGAATCCCCAACTCCCTTGTGGAAGATTTGAACTAGCCATAGCATGTGCTTTTCTTTC 306
                      ************************************************************

consensus_8604#0      TTGGGCGTTTAGTGCCACATCTGCTCTCGTAATGTTTTGGCTCCTCGCTTCATTGTGAAT 599
consensus_8604#1      TTGGGCGTTTAGTGCCACATCTGCTCTCGTAATGTTTTGGCTCCTCGCTTCATTGTGAAT 366
                      ************************************************************

consensus_8604#0      AAATTTGTACAACCTCTGTCTGTAGCTCCCCTCTGTTTGATCCCTTCTCTGTATACGAAC 659
consensus_8604#1      AAATTTGTACAACTTCTGTCTGTAGCTCCCCTCTGTTTGATCCCTTCTCTGTATACGAAC 426
                      ************* **********************************************

consensus_8604#0      TAATTTTTGAAGACGACAACACAACAGAAGTTCTGAAATGTCATACAAGCTCCATGAACT 719
consensus_8604#1      TAATTTTTGAAGACAACAC----ACAGAAGTTCTGAAATGTCATACAAGCTCCATGAACT 482
                      ************** ***     *************************************

consensus_8604#0      CTGTTTCCGAGAAACTAATTGAATG----------------------------------- 744
consensus_8604#1      CTGTTTCCGAGAAACTAATTGAATGGGACATCTGCAGAAAATTTATGTTCCATATGCTCC 542
                      *************************                                   

consensus_8604#0      ------------------------
consensus_8604#1      AGCACGTTTCCTTCTCAAAAAAAA 566