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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8608#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 923 fasta sequence
[TTTTTTTTTTTTTTTTTTTTTTTAAAACGAGGAAAATAGAACCCATTTCATTAACTGCACCCCATGCACATAGTTCGATAGAACATTTGAACGCCATTCCATTCGNGAATCCAGGTTCAATGTTGGGAAGAAACCGCCACCTGANCAAGCTAAAATATTTCAAAGTTATGAACCAATGCCAACTTCTCGAGCTAGTTAAGGGGCAGACAGCCTGCAAAAGCATATTCAATTCATCTAGTGGAC-AAAGTTGAACCCTA-GCTAATCTACGGAACGTCGCT-GAAAATTCG-CCTAAAAACAAAAAAAGAAAGAAAGAACTCAACGCAAATGGAACTAGAGGCTTTCTCCA-GTGTATTTACTCCAATACTTGTTGAAACACAGATTTTATCATCATGA-GTTTCTTCCCAAACTGTCCCCCAGTACAAATCGAGGGCAAAACACCCGTTGCAGTCA-GTTGCGAGGTTGTATACAGCTGGGTAAAAACATGAGCATCCTTATGCCTGTCACTCCACAGCATATGCCCACTTTGATGTCACATGGCAGCGATCTCAGGCAGAAAATGCATATGTTCGAGTAACATATGCTGATCTTAATA-TGTTAAGTTCCAAGCCAAGTGCTCACTTTCCAGCACATCGCTCAAAATCACAAA-TGATCTCTCAA-TGTCATCAAAACTAACCTTCAGGCCGAGGCCTTTTATAGTCTCTTTCACCTCGCTCATGAGCAGTATCATGACTGTCATGGTGCTTTGAGCCATGGGAATTGCGCTGTTCTTTAATGTCGTCCATTGGGGCATCTTGAGCAGTCTCTGGTGTATTCTGCTTGCCAAGGTGCCCATTGCCTGTAACTTGATCAGCATTTCTATGATCCCCCCGATGCATAACATGAGGGGGACTCTGCTTCCTCTCCTGCTTTATCTTATTATCCTC]
[-] EMBL C96853 [TTTTTTTTTTTTTTTTTTTTTTTAAAACGAGGAAAATAGAACCCATTTCATTAACTGCACCCCATGCACATAGTTCGATAGAACATTTGAACGCCATTCCATTCGNGAATCCAGGTTCAATGTTGGGAAGAAACCGCCACCTGANCAAGCTAAAATATTTCAAAGTTATGANCCAATGCCAACTTCTCGAGCTAGTTAAGGGGCAGACAGCCTGCAAAAGCATATTCAATTCATCTNGTGGNCAAAAGTTGAACCCTANGCTAATCTACGG ACGTCGCTGGAAAATTCGNCCTAA ]
[+] EMBL CB674094 [ AACATTTGAACGCCATTCCATTCGAGAATCCAGGTTCAATGTTGGGAAGAAACCGCCACCTGAACAAGCTAAAATATTTCAAAGTTATGAACCAATGCCAACTTCTCGAGCTAGTTAAGGGGCAGACAGCCTGCAAAAGCATATTCAATTCATCTAGTGGAC AAAGTTGAACCCTA GCTAATCTACGGAACGTCGCT GAAAATTCG CCTAAAAACAAAAAAAGAAAGAAAGAACTCAACGCAAATGGAACTAGAGGCTTTCTCCA GTGTATTTACTCCAATACTTGTTGAAACACAGATTTTATCATCATGA GTTTCTTCCCAAACTGTCCCCCAGTACAAATCGAGGGCAAAACACCCGTTGCAGTCA GTTGCGAGGTTGTATACAGCTGGGTAAAAACATGAGCATCCTTATGCCTGTCACTCCACAGCATATGCCCACTTTGATGTCACATGGCAGCGATCTCAGGCAGAAAATGCATATGTTCGAGTAACATATGCTGATCTTAATA TGTTAAGTTCCAAGCCAAGTGCTCACTTTCCAGCACATCGCTCAAAATCACAAA TGATCTCTCAA TGTCATCAAAACTAACCTTCAGGCCGAGGCCTTTTATAGTCTCTTTCACCTCGCTCATGAGCAGTATCATGACTGTCATGGTGCTTTGAGCCATGGGAATTGCGCTGTTCTTTAATGTCGTCCATTGGGGCATCTTGAGCAGTCTCTGGTGTATTCTGCTTGCCAAGGTGCCCATTGCCTGTAACTTGATCAGCATTTCTATGATCCCCCCGATGCATAACATGAGGGGGACTCTGCTTCCTCTCCTGCTTTATCTTATTATCCTC]
[+] EMBL CB637572 [ TTATGAACCAATGCCAACTTCTCGAGCTAGTTAAGGGGCAGACAGCCTGCAAAAGCATATTCAATTCATCTAGTGGAC AAAGTTGAACCCTA GCTAATCTACGGAACGTCGCT GAAAATTCG CCTAAAAACAAAAAAAGAAAGAAAGAACTCAACGCAAATGGAACTAGAGGCTTTCTCCA GTGTATTTACTCCAATACTTGTTGAAACACAGATTTTATCATCATGA GTTTCTTCCCAAACTGTCCCCCAGTACAAATCGAGGGCAAAACACCCGTTGCAGTCA GTTGCGAGGTTGTATACAGCTGGGTAAAAACATGAGCATCCTTATGCCTGTCACTCCACAGCATATGCCCACTTTGATGTCACATGGCAGCGATCTCAGGCAGAAAATGCATATGTTCGAGTAACATATGCTGATCTTAATA TGTTAAGTTCCAAGCCAAGTGCTCACTTTCCAGCACATCGCTCAAAATC ]
[-] EMBL BI802592 [ tttttCTGCAAAAGCATATTCAATTCATCTAGTGGAC AAAGTTGAACCCTA GCTAATCTACGGAACGTCGCT GAAAATTCG CCTAAAAACAAAA AAAGAAAGAACTCAACGCAAATGGAACTAGAGGCTTTCTCCAGGTGTATTTACTCCAATAC TGTTGAAACACAGATTTTATCATCATGAGGTTTCTTCCCAAACTGTCCCCCAGTACAAATCCAGGGCAAAACACCCGTTGCAGTCAGGTTGCAAGGTTGTATACAGCTGGGTAAAAACATGAGCATCCTTATGCCTGTCACTCCACAGCATATGCTCACTTTGATGTCACATGGCAGCGATCTCAGGCAGAAAATGCATATGTTCGAGTAACATATGCTGATCTTAATAGTGTTAAGTTCCAAGCCAAGTGCTCACTTTCCAGCACATCGCTCAAAATCACAAAGTGATCTCTCAAGTGTCATCAAAACTAACCTTCAGGCCGAGGCCTTTTATAGTCTCTTTCACCTCGCTCATGAGCAGTATC ]
consensusID : consensus_8608#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 487 fasta sequence
[TTTTTTTTTTAAGTTAAGGGGCAGACAGCCTGCAAAAGCATATTCAATTCATCTAGTGGACAAAGTTGAACCCTAGCTAATCTACGGAACGTCGCTGAAAATTCGCCTAAAAACAAAAAAAGAAAGAAAGAACTCAACGCAAATGGAACTAGAGGCTTTCTCCAGTGTATTTACTCCAATACTTGTTGAAACACAGATTTTATCATCATGAGTTTCTTCCCAAACTGTCCCCCAGTACAAATCCAGGGCAAAACACCCGTTGCAGTCAGTTGCGAGGTTGTATACAGCTGGGTAAAAACATGAGCATCCTTATGCCTGTCACTCCACAGCATATGCCCACTTGATGTCACATGGCAGCGATCTCAGGCAGAAAATGCATATGTTCGAGTAACATATGCTGATCTTAATATGTTCAGTTCCAAGCCAAGTGCTCACTTTCCAGAATCGCTCAAAATCACAAATGATCTCTCAAAGGCATCAAAATAAC]
[-] EMBL BI812769 [TTTTTTTTTTAAGTTAAGGGGCAGACAGCCTGCAAAAGCATATTCAATTCATCTAGTGGACAAAGTTGAACCCTAGCTAATCTACGGAACGTCGCTGAAAATTCGCCTAAAAACAAAAAAAGAAAGAAAGAACTCAACGCAAATGGAACTAGAGGCTTTCTCCAGTGTATTTACTCCAATACTTGTTGAAACACAGATTTTATCATCATGAGTTTCTTCCCAAACTGTCCCCCAGTACAAATCCAGGGCAAAACACCCGTTGCAGTCAGTTGCGAGGTTGTATACAGCTGGGTAAAAACATGAGCATCCTTATGCCTGTCACTCCACAGCATATGCCCACTTGATGTCACATGGCAGCGATCTCAGGCAGAAAATGCATATGTTCGAGTAACATATGCTGATCTTAATATGTTCAGTTCCAAGCCAAGTGCTCACTTTCCAGAATCGCTCAAAATCACAAATGATCTCTCAAAGGCATCAAAATAAC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8608#0 TTTTTTTTTTTTTTTTTTTTTTTAAAACGAGGAAAATAGAACCCATTTCATTAACTGCAC 60
consensus_8608#1 ------------------------------------------------------------
consensus_8608#0 CCCATGCACATAGTTCGATAGAACATTTGAACGCCATTCCATTCGNGAATCCAGGTTCAA 120
consensus_8608#1 ------------------------------------------------------------
consensus_8608#0 TGTTGGGAAGAAACCGCCACCTGANCAAGCTAAAATATTTCAAAGTTATGAACCAATGCC 180
consensus_8608#1 ------------------------------------------------------------
consensus_8608#0 AACTTCTCGAGCTAGTTAAGGGGCAGACAGCCTGCAAAAGCATATTCAATTCATCTAGTG 240
consensus_8608#1 --TTTTTTTTTTAAGTTAAGGGGCAGACAGCCTGCAAAAGCATATTCAATTCATCTAGTG 58
** * ***********************************************
consensus_8608#0 GACAAAGTTGAACCCTAGCTAATCTACGGAACGTCGCTGAAAATTCGCCTAAAAACAAAA 300
consensus_8608#1 GACAAAGTTGAACCCTAGCTAATCTACGGAACGTCGCTGAAAATTCGCCTAAAAACAAAA 118
************************************************************
consensus_8608#0 AAAGAAAGAAAGAACTCAACGCAAATGGAACTAGAGGCTTTCTCCAGTGTATTTACTCCA 360
consensus_8608#1 AAAGAAAGAAAGAACTCAACGCAAATGGAACTAGAGGCTTTCTCCAGTGTATTTACTCCA 178
************************************************************
consensus_8608#0 ATACTTGTTGAAACACAGATTTTATCATCATGAGTTTCTTCCCAAACTGTCCCCCAGTAC 420
consensus_8608#1 ATACTTGTTGAAACACAGATTTTATCATCATGAGTTTCTTCCCAAACTGTCCCCCAGTAC 238
************************************************************
consensus_8608#0 AAATCGAGGGCAAAACACCCGTTGCAGTCAGTTGCGAGGTTGTATACAGCTGGGTAAAAA 480
consensus_8608#1 AAATCCAGGGCAAAACACCCGTTGCAGTCAGTTGCGAGGTTGTATACAGCTGGGTAAAAA 298
***** ******************************************************
consensus_8608#0 CATGAGCATCCTTATGCCTGTCACTCCACAGCATATGCCCACTTTGATGTCACATGGCAG 540
consensus_8608#1 CATGAGCATCCTTATGCCTGTCACTCCACAGCATATGCCCACTT-GATGTCACATGGCAG 357
******************************************** ***************
consensus_8608#0 CGATCTCAGGCAGAAAATGCATATGTTCGAGTAACATATGCTGATCTTAATATGTTAAGT 600
consensus_8608#1 CGATCTCAGGCAGAAAATGCATATGTTCGAGTAACATATGCTGATCTTAATATGTTCAGT 417
******************************************************** ***
consensus_8608#0 TCCAAGCCAAGTGCTCACTTTCCAGCACATCGCTCAAAATCACAAATGATCTCTCAATGT 660
consensus_8608#1 TCCAAGCCAAGTGCTCACTTTCCAGA--ATCGCTCAAAATCACAAATGATCTCTCAAAGG 475
************************* ***************************** *
consensus_8608#0 CATCAAAACTAACCTTCAGGCCGAGGCCTTTTATAGTCTCTTTCACCTCGCTCATGAGCA 720
consensus_8608#1 CATCAAAA-TAAC----------------------------------------------- 487
******** ****
consensus_8608#0 GTATCATGACTGTCATGGTGCTTTGAGCCATGGGAATTGCGCTGTTCTTTAATGTCGTCC 780
consensus_8608#1 ------------------------------------------------------------
consensus_8608#0 ATTGGGGCATCTTGAGCAGTCTCTGGTGTATTCTGCTTGCCAAGGTGCCCATTGCCTGTA 840
consensus_8608#1 ------------------------------------------------------------
consensus_8608#0 ACTTGATCAGCATTTCTATGATCCCCCCGATGCATAACATGAGGGGGACTCTGCTTCCTC 900
consensus_8608#1 ------------------------------------------------------------
consensus_8608#0 TCCTGCTTTATCTTATTATCCTC 923
consensus_8608#1 -----------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||