cluster # 861

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Oryza sativa
cluster # 861 cluster # 861 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_861#0 length = 896 sequences # 1

consensus_861#1 length = 540 sequences # 1

consensusID : consensus_861#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 896
fasta sequence

                              [CAATCAATCAAAATCCAAGAACAAGAACAAGAACAAGAACACAAATCCAGAGAGAGAGGCGATTGGCGCCACCATTGCCATGCACGCCGCCTCGTCCTTGTTCTTGACCCGCGCCGCCGCCGAGGCCGCCGTCGCCGCCTAGTGCCGTGATCCTCTTTCGCCGCCGCCGCCGATGGCGCCGCCGATGCAGGAGGGGGAGGAGCGGCCGGGCGGGAGCGCGTGCGTGTGGATGGTGACGACGCTGCTACTCCTCTCCGTGCTCGCCGGCGGCGGGTGCCTCGCCGGCTACGTGGTGCTGCCGCCGCACGAGGCGCCGCACTGGCTCCCCGCCGTCGGGCTGGCGCTCGTCGCGCTCCCGTGGGCGTTCTGGGTCGCCACGTGCTCGTACCGGTGTGTCCGGAGGCGCGCCGCCGACCGGCAGGCCATGGGCTCCGCCGCCGTGGCGCCGGCGGCCACCGGCAGCATGCGCTCGTGCGCCGACTCCTGAAACTCACTTGTTAATTAGAGTTATTCAAGACGCAAATGAAGGTGATGAGGGCGGAATTAAATTCGATGACTCCATGTACAGATCGATTCAAATTGGAGGATAGCAAAGTATTTGGATGAATTTGATATGGTCTTGCGCCTATGCATGAATGCAGATATAAGCCCCCTGCTTGGTACACTGAAACTGCAAGGAAATGATGAAAAGAAAGGGTGCAACCTATTGCAGTTTCAAAGCAAAATGCGAATGAACAGTTCATCTTGAATTAAGATTTGTCCTACACCTTTTTTGTATTTTTGGAAGTATGACTTGAAAAGTTGAAGTAATCTTGTTTGTATTCTGAGAAGGTGGAAGTGATGATCTCATAGATGATGGATAGGACAGTGTCATACACAAATGGTCAAATATAATA]

[+] EMBL AK111008             [CAATCAATCAAAATCCAAGAACAAGAACAAGAACAAGAACACAAATCCAGAGAGAGAGGCGATTGGCGCCACCATTGCCATGCACGCCGCCTCGTCCTTGTTCTTGACCCGCGCCGCCGCCGAGGCCGCCGTCGCCGCCTAGTGCCGTGATCCTCTTTCGCCGCCGCCGCCGATGGCGCCGCCGATGCAGGAGGGGGAGGAGCGGCCGGGCGGGAGCGCGTGCGTGTGGATGGTGACGACGCTGCTACTCCTCTCCGTGCTCGCCGGCGGCGGGTGCCTCGCCGGCTACGTGGTGCTGCCGCCGCACGAGGCGCCGCACTGGCTCCCCGCCGTCGGGCTGGCGCTCGTCGCGCTCCCGTGGGCGTTCTGGGTCGCCACGTGCTCGTACCGGTGTGTCCGGAGGCGCGCCGCCGACCGGCAGGCCATGGGCTCCGCCGCCGTGGCGCCGGCGGCCACCGGCAGCATGCGCTCGTGCGCCGACTCCTGAAACTCACTTGTTAATTAGAGTTATTCAAGACGCAAATGAAGGTGATGAGGGCGGAATTAAATTCGATGACTCCATGTACAGATCGATTCAAATTGGAGGATAGCAAAGTATTTGGATGAATTTGATATGGTCTTGCGCCTATGCATGAATGCAGATATAAGCCCCCTGCTTGGTACACTGAAACTGCAAGGAAATGATGAAAAGAAAGGGTGCAACCTATTGCAGTTTCAAAGCAAAATGCGAATGAACAGTTCATCTTGAATTAAGATTTGTCCTACACCTTTTTTGTATTTTTGGAAGTATGACTTGAAAAGTTGAAGTAATCTTGTTTGTATTCTGAGAAGGTGGAAGTGATGATCTCATAGATGATGGATAGGACAGTGTCATACACAAATGGTCAAATATAATA]




>consensus_861#0
CAATCAATCAAAATCCAAGAACAAGAACAAGAACAAGAACACAAATCCAGAGAGAGAGGC
GATTGGCGCCACCATTGCCATGCACGCCGCCTCGTCCTTGTTCTTGACCCGCGCCGCCGC
CGAGGCCGCCGTCGCCGCCTAGTGCCGTGATCCTCTTTCGCCGCCGCCGCCGATGGCGCC
GCCGATGCAGGAGGGGGAGGAGCGGCCGGGCGGGAGCGCGTGCGTGTGGATGGTGACGAC
GCTGCTACTCCTCTCCGTGCTCGCCGGCGGCGGGTGCCTCGCCGGCTACGTGGTGCTGCC
GCCGCACGAGGCGCCGCACTGGCTCCCCGCCGTCGGGCTGGCGCTCGTCGCGCTCCCGTG
GGCGTTCTGGGTCGCCACGTGCTCGTACCGGTGTGTCCGGAGGCGCGCCGCCGACCGGCA
GGCCATGGGCTCCGCCGCCGTGGCGCCGGCGGCCACCGGCAGCATGCGCTCGTGCGCCGA
CTCCTGAAACTCACTTGTTAATTAGAGTTATTCAAGACGCAAATGAAGGTGATGAGGGCG
GAATTAAATTCGATGACTCCATGTACAGATCGATTCAAATTGGAGGATAGCAAAGTATTT
GGATGAATTTGATATGGTCTTGCGCCTATGCATGAATGCAGATATAAGCCCCCTGCTTGG
TACACTGAAACTGCAAGGAAATGATGAAAAGAAAGGGTGCAACCTATTGCAGTTTCAAAG
CAAAATGCGAATGAACAGTTCATCTTGAATTAAGATTTGTCCTACACCTTTTTTGTATTT
TTGGAAGTATGACTTGAAAAGTTGAAGTAATCTTGTTTGTATTCTGAGAAGGTGGAAGTG
ATGATCTCATAGATGATGGATAGGACAGTGTCATACACAAATGGTCAAATATAATA

consensusID : consensus_861#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 540
fasta sequence

                              [TTTTGGCACATTTTTTTTCAATCAATCAAAATCCAAGAACAAGAACAAGAACAAGAACACAAATCCAGAGAGAGAGGCGATTGGCGCCACCATTGCCATGCACGCCGCCTCGTCCTTGTTCTTGACCCGCGCCGCCGCCGAGGCCGCCGTCGCCGCCTAGTGCCGTGATCCTCTTTCGCCGCCGCCGCCGATGGCGCCGCCGATGCAGGAGGGGGAGGAGCGGCCGGGCGGGAGCGCGTGCGTGTGGATGGTGACGACGCTGCTACTCCTCTCCGTGCTCGCCGGCGGCGGGTGCCTCGCCGGCTACGTGGTGCTGCCGTCGCACGAGGCGCCGCACTGGCTCCCCGCCGTCGGGCTGGCGCTCGTCGCGCTCCCGTGGGCGTTCTGGGTCGCCACGTGCTCGTACCGGTGTGTCCGGAGGCGCGCCGCCGACCGGCAGGCCATGGGCTCCGCCGCCGTGGCGCCGGCGGCCACCGGCAGCATGCGCTCGTGCGCCGACTCCTGAAACTCACTGTAAGCAAACCGTCCTAATTATACTGA]

[-] EMBL AK062993             [TTTTGGCACATTTTTTTTCAATCAATCAAAATCCAAGAACAAGAACAAGAACAAGAACACAAATCCAGAGAGAGAGGCGATTGGCGCCACCATTGCCATGCACGCCGCCTCGTCCTTGTTCTTGACCCGCGCCGCCGCCGAGGCCGCCGTCGCCGCCTAGTGCCGTGATCCTCTTTCGCCGCCGCCGCCGATGGCGCCGCCGATGCAGGAGGGGGAGGAGCGGCCGGGCGGGAGCGCGTGCGTGTGGATGGTGACGACGCTGCTACTCCTCTCCGTGCTCGCCGGCGGCGGGTGCCTCGCCGGCTACGTGGTGCTGCCGTCGCACGAGGCGCCGCACTGGCTCCCCGCCGTCGGGCTGGCGCTCGTCGCGCTCCCGTGGGCGTTCTGGGTCGCCACGTGCTCGTACCGGTGTGTCCGGAGGCGCGCCGCCGACCGGCAGGCCATGGGCTCCGCCGCCGTGGCGCCGGCGGCCACCGGCAGCATGCGCTCGTGCGCCGACTCCTGAAACTCACTGTAAGCAAACCGTCCTAATTATACTGA]




>consensus_861#1
TTTTGGCACATTTTTTTTCAATCAATCAAAATCCAAGAACAAGAACAAGAACAAGAACAC
AAATCCAGAGAGAGAGGCGATTGGCGCCACCATTGCCATGCACGCCGCCTCGTCCTTGTT
CTTGACCCGCGCCGCCGCCGAGGCCGCCGTCGCCGCCTAGTGCCGTGATCCTCTTTCGCC
GCCGCCGCCGATGGCGCCGCCGATGCAGGAGGGGGAGGAGCGGCCGGGCGGGAGCGCGTG
CGTGTGGATGGTGACGACGCTGCTACTCCTCTCCGTGCTCGCCGGCGGCGGGTGCCTCGC
CGGCTACGTGGTGCTGCCGTCGCACGAGGCGCCGCACTGGCTCCCCGCCGTCGGGCTGGC
GCTCGTCGCGCTCCCGTGGGCGTTCTGGGTCGCCACGTGCTCGTACCGGTGTGTCCGGAG
GCGCGCCGCCGACCGGCAGGCCATGGGCTCCGCCGCCGTGGCGCCGGCGGCCACCGGCAG
CATGCGCTCGTGCGCCGACTCCTGAAACTCACTGTAAGCAAACCGTCCTAATTATACTGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_861#0      ------------------CAATCAATCAAAATCCAAGAACAAGAACAAGAACAAGAACAC 42
consensus_861#1      TTTTGGCACATTTTTTTTCAATCAATCAAAATCCAAGAACAAGAACAAGAACAAGAACAC 60
                                       ******************************************

consensus_861#0      AAATCCAGAGAGAGAGGCGATTGGCGCCACCATTGCCATGCACGCCGCCTCGTCCTTGTT 102
consensus_861#1      AAATCCAGAGAGAGAGGCGATTGGCGCCACCATTGCCATGCACGCCGCCTCGTCCTTGTT 120
                     ************************************************************

consensus_861#0      CTTGACCCGCGCCGCCGCCGAGGCCGCCGTCGCCGCCTAGTGCCGTGATCCTCTTTCGCC 162
consensus_861#1      CTTGACCCGCGCCGCCGCCGAGGCCGCCGTCGCCGCCTAGTGCCGTGATCCTCTTTCGCC 180
                     ************************************************************

consensus_861#0      GCCGCCGCCGATGGCGCCGCCGATGCAGGAGGGGGAGGAGCGGCCGGGCGGGAGCGCGTG 222
consensus_861#1      GCCGCCGCCGATGGCGCCGCCGATGCAGGAGGGGGAGGAGCGGCCGGGCGGGAGCGCGTG 240
                     ************************************************************

consensus_861#0      CGTGTGGATGGTGACGACGCTGCTACTCCTCTCCGTGCTCGCCGGCGGCGGGTGCCTCGC 282
consensus_861#1      CGTGTGGATGGTGACGACGCTGCTACTCCTCTCCGTGCTCGCCGGCGGCGGGTGCCTCGC 300
                     ************************************************************

consensus_861#0      CGGCTACGTGGTGCTGCCGCCGCACGAGGCGCCGCACTGGCTCCCCGCCGTCGGGCTGGC 342
consensus_861#1      CGGCTACGTGGTGCTGCCGTCGCACGAGGCGCCGCACTGGCTCCCCGCCGTCGGGCTGGC 360
                     ******************* ****************************************

consensus_861#0      GCTCGTCGCGCTCCCGTGGGCGTTCTGGGTCGCCACGTGCTCGTACCGGTGTGTCCGGAG 402
consensus_861#1      GCTCGTCGCGCTCCCGTGGGCGTTCTGGGTCGCCACGTGCTCGTACCGGTGTGTCCGGAG 420
                     ************************************************************

consensus_861#0      GCGCGCCGCCGACCGGCAGGCCATGGGCTCCGCCGCCGTGGCGCCGGCGGCCACCGGCAG 462
consensus_861#1      GCGCGCCGCCGACCGGCAGGCCATGGGCTCCGCCGCCGTGGCGCCGGCGGCCACCGGCAG 480
                     ************************************************************

consensus_861#0      CATGCGCTCGTGCGCCGACTCCTGAAACTCACTTGTTAATTAGAGTTATTCAAGACGCAA 522
consensus_861#1      CATGCGCTCGTGCGCCGACTCCTGAAACTCACT-GTAAGCAAACCGTCCTAATTATACTG 539
                     ********************************* ** *   *    *  * *  *  *  

consensus_861#0      ATGAAGGTGATGAGGGCGGAATTAAATTCGATGACTCCATGTACAGATCGATTCAAATTG 582
consensus_861#1      A----------------------------------------------------------- 540
                     *                                                           

consensus_861#0      GAGGATAGCAAAGTATTTGGATGAATTTGATATGGTCTTGCGCCTATGCATGAATGCAGA 642
consensus_861#1      ------------------------------------------------------------
                                                                                 

consensus_861#0      TATAAGCCCCCTGCTTGGTACACTGAAACTGCAAGGAAATGATGAAAAGAAAGGGTGCAA 702
consensus_861#1      ------------------------------------------------------------
                                                                                 

consensus_861#0      CCTATTGCAGTTTCAAAGCAAAATGCGAATGAACAGTTCATCTTGAATTAAGATTTGTCC 762
consensus_861#1      ------------------------------------------------------------
                                                                                 

consensus_861#0      TACACCTTTTTTGTATTTTTGGAAGTATGACTTGAAAAGTTGAAGTAATCTTGTTTGTAT 822
consensus_861#1      ------------------------------------------------------------
                                                                                 

consensus_861#0      TCTGAGAAGGTGGAAGTGATGATCTCATAGATGATGGATAGGACAGTGTCATACACAAAT 882
consensus_861#1      ------------------------------------------------------------
                                                                                 

consensus_861#0      GGTCAAATATAATA 896
consensus_861#1      --------------