cluster # 8614

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Oryza sativa
cluster # 8614 cluster # 8614 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8614#0 length = 687 sequences # 3

consensus_8614#1 length = 452 sequences # 2

consensusID : consensus_8614#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 687
fasta sequence

                              [TGTGCTCAACCACAAACAACCAAAGCAGCATGTTCTATGCAATACCGAGCTGCTGTCTCTGCAATCTGATATGGATCAACTGTTCCTGGAGAAGATGGAAGCAGAGACTCAATGCTTCATCCTGACAAGAGCATCGCAAGCTTGGAATCCCCTGACTGAGGATCAAGCTGCTATTTTTG-ACATT-CAGAAATCTCTACCTGAGGATCACAAACAGCTTGAAGCTAAGCTACGGCACA-CCGAGAACAGGGCA-CTGATGCTAGAGGAGATGGTGGAGAAGCTAGAGGCACA-GTGCA-AAGATCTTGCTAGGACTTCAGAAATCCTGAAGCTGCAGGCAAGAGCAAGCAGAGCTTCGCTGTTTTGCTCCGTCCAGTTTGTTCTGCTGTTCATCGCCGTCGGAACCTTCCTCGTCCGGCTATGGCCCTCTTCCTCTGAATTTGTACCTA-CCTGAGGTTAGAAAATCCGGCGCCCATGAGCCTTTGTGTAGGCA-TTCTTGAAAAGTT-CCTTATTGTAATTTACTAAGCATTGGTCACCCTATAATTTTTCAAGTCTGTAACATCAACTCAATTTTGCTAA-GAATCTCCTCTTATCTTTATGGGAATTCAATCACATGTACTTCTCGATTATCTGGATTCTGTAAATGTCAAAGTTCCTATATAAATGTATTTCTTTCAGACCGTATAAAAAAAA]

[+] EMBL CA754590             [TGTGCTCAACCACAAACAACCAAAGCAGCATGTTCTATGCAATACCGAGCTGCTGTCTCTGCAATCTGATATGGATCAACTGTTCCTGGAGAAGATGGAAGCAGAGACTCAATGCTTCATCCTGACAAGAGCATCGCAAGCTTGGAATCCCCTGACTGAGGATCAAGCTGCTATTTTTG ACATT CAGAAATCTCTACCTGAGGATCACAAACAGCTTGAAGCTAAGCTACGGCACA CCGAGAACAGGGCA CTGATGCTAGAGGAGATGGTGGAGAAGCTAGAGGCACA GTGCA AAGATCTTGCTAGGACTTCAGAAATCCTGAAGCTGCAGGCAAGAGCAAGCAGAGCTTCGCTGGTTTGCTCCGTCCAGTTTGTTCTGCTGTTCATCGCCGTCGGAACCTTCCTCGTCCGGCTATGGGCCTCTTCCTCTGGATTTGTACCTA CCTGAGGGTAGAAAATCCGGCGCCCATGAGCCTTTGTGTAGGCA TTCTTGAAAAGTT CCTTATTGGAATTTACTCAGCATTGGGCACCCCATTAATTTTCAGGCCTGTAACATCAACTCATTTTTGCTAA GAATCTCCTCTTATCTTTATGGGAA                                                                                         ]
[-] EMBL CB648697             [                                                                                           AAGATGGAAGCAGAGACTCAATGCTTCATCCTGACAAGAGCATCGCAAGCTTGGAATCCCCTGACTGAGGATCAAGCTGCTATTTTTG ACATT CAGAAATCTTTACCTGAGGATCACAAACAGCTTGAAGCTAAGTTACGGCACA CCGAGAACAGGGCA CTGATGCTAGAGGAGATGGTGGAGAAGCTAGAGGCACA GTGCA AAGATCTTGCTAGGACTTCAGAAATCCTGAAGCTGCAGGCAAGAGCAAGCAGAGCTTCGCTGTTTTGCTCCGTCCAGTTTGTTCTGCTGTTCATCGCCGTCGGAACCTTCCTCGTCCGGCTATGGCCCTCTTCCTCTGAATTTGTACCTA CCTGAGGTTAGAAAATCCGGCGCCAATGAGCCTTTGTGTAGGCA TTCTTGAAAATTTGGGGTATTGTAATTTACTAAGCATTGGTCACCCTATAATTTTTCAAGTCTGTAACATCAACTCAATTTTTTTAAGGACTCT                                                                                                            ]
[+] EMBL BM420537             [                                                                                                                                                                        TGCTATTTTTGCACATTCCAGAAATCTCTACCTGAGGATCACAAACAGCTCGAAGCTAAGCTACGGCACACCCGAGAACA GGCACCTGATGCTAGAGGAGATGGTGGAGAAGCTAGAGGCACACGT CACAAGATCTTGCTAGGACTTCAGAAATCCTGAAGCTGCAGGCAAGAGCAAGCAGAGCTTCGCTGTTTTGCTCCGTCCAGTTTGTTCTGCTGTTCATCGCCGTCGGAACCTTCCTCGTCCGGCTATGGCCCTCTTCCTCTGAATTTGTACCTACCCTGAGGTTAGAAAATCCGGCG CCATGAGCCTTTGTGTAGGCACTTCTTGAAAAGTT CCTTATTGTAATTTACTAAGCCTTGGTCACCCTATAATTTTTCAAGTCTGTAACATCAACTCAATTTTGCTAG TAATCTCTTCTTATCTTTACTGTACTTCAATCACATGTACTTCTCGATTATCTGGATTCTGTAAATGTCAAAGTTCCTATATAAATGTATTTCTTTCAGACCGTATAAAAAAAA]




>consensus_8614#0
TGTGCTCAACCACAAACAACCAAAGCAGCATGTTCTATGCAATACCGAGCTGCTGTCTCT
GCAATCTGATATGGATCAACTGTTCCTGGAGAAGATGGAAGCAGAGACTCAATGCTTCAT
CCTGACAAGAGCATCGCAAGCTTGGAATCCCCTGACTGAGGATCAAGCTGCTATTTTTGA
CATTCAGAAATCTCTACCTGAGGATCACAAACAGCTTGAAGCTAAGCTACGGCACACCGA
GAACAGGGCACTGATGCTAGAGGAGATGGTGGAGAAGCTAGAGGCACAGTGCAAAGATCT
TGCTAGGACTTCAGAAATCCTGAAGCTGCAGGCAAGAGCAAGCAGAGCTTCGCTGTTTTG
CTCCGTCCAGTTTGTTCTGCTGTTCATCGCCGTCGGAACCTTCCTCGTCCGGCTATGGCC
CTCTTCCTCTGAATTTGTACCTACCTGAGGTTAGAAAATCCGGCGCCCATGAGCCTTTGT
GTAGGCATTCTTGAAAAGTTCCTTATTGTAATTTACTAAGCATTGGTCACCCTATAATTT
TTCAAGTCTGTAACATCAACTCAATTTTGCTAAGAATCTCCTCTTATCTTTATGGGAATT
CAATCACATGTACTTCTCGATTATCTGGATTCTGTAAATGTCAAAGTTCCTATATAAATG
TATTTCTTTCAGACCGTATAAAAAAAA

consensusID : consensus_8614#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 452
fasta sequence

                              [TTCCTCCTTTTAGGATCCCTCCAAGATCGAGGCCGATCCCCACCATGCGCGCCCACCGATCCCGACAGCTCGTGTCCCGCGATCCCATGGCGGTTCTCTGATCCCATCTGGCTCGCGAAGCCGCCGCGTTTTGACGGGAATTGCGTGGGCTGCGGGCGGCTGGACGCCATGGATTCCGGCGGCAACAGCGTGAATTCTGCGGTGGAGTCGGTGGCGGAGTCGCCGGCGCCGGCTTCACCGGCGAGCAATCCCACCGCACCCGCCGCGGTCACCAAGGGGCGTGGGCTACTGCGGTGGCGGTGTATCCCCCGGGAACACCACGAGGAGGGCTCACCTGGCTCCGGCGGCGGAAAAAGGACATAACCCGACAAAGAAGGTTCCCACCGCGATGAACACCACAACAAACTGGACGGACCAAAACAGCGAAGCTCTGCTTGATCTTGCCTGCACCT]

[+] EMBL CB672302             [TTCCTCCTTTTAGGATCCCTCCAAGATCGAGGCCGATCCCCACCATGCGCGCCCACCGATCCCGACAGCTCGTGTCCCGCGATCCCATGGCGGTTCTCTGATCCCATCTGGCTCGCGAAGCCGCCGCGTTTTGACGGGAATTGCGTGGGCTGCGGGCGGCTGGACGCCATGGATTCCGGCGGCAACAGCGTGAATTCTGCGGTGGAGTCGGTGGCGGAGTCGCCGGCGCCGGCTTCACCGGCGAGCAATCCCACCGCACCCGCCGCGGTCACCAAGGGGCGTGGGCTACTGCGGTGGCGGTGTATCCCCCGGGAACACCACGAGGAGGGCTCACC                                                                                                                     ]
[+] EMBL CB648696             [                                                                                                                                                                                              TGAATTCTGCCCTGGAGTCGGTGGCGGAGTCGCCGGCGCCGGCTTCACCGGCGAGCAATCCCACCGCACCCGCCGCGGTCACCAAGGGGCGTGGGCTACGGCGGTGGCGGCGTATCCCCCGGGAACACCACGAGGAGGGCTCACCTGGCTCCGGCGGCGGAAAAAGGACATAACCCGACAAAGAAGGTTCCCACCGCGATGAACACCACAACAAACTGGACGGACCAAAACAGCGAAGCTCTGCTTGATCTTGCCTGCACCT]




>consensus_8614#1
TTCCTCCTTTTAGGATCCCTCCAAGATCGAGGCCGATCCCCACCATGCGCGCCCACCGAT
CCCGACAGCTCGTGTCCCGCGATCCCATGGCGGTTCTCTGATCCCATCTGGCTCGCGAAG
CCGCCGCGTTTTGACGGGAATTGCGTGGGCTGCGGGCGGCTGGACGCCATGGATTCCGGC
GGCAACAGCGTGAATTCTGCGGTGGAGTCGGTGGCGGAGTCGCCGGCGCCGGCTTCACCG
GCGAGCAATCCCACCGCACCCGCCGCGGTCACCAAGGGGCGTGGGCTACTGCGGTGGCGG
TGTATCCCCCGGGAACACCACGAGGAGGGCTCACCTGGCTCCGGCGGCGGAAAAAGGACA
TAACCCGACAAAGAAGGTTCCCACCGCGATGAACACCACAACAAACTGGACGGACCAAAA
CAGCGAAGCTCTGCTTGATCTTGCCTGCACCT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8614#0      TGTGCTCAACCACAAACAACCAAAGCAGCATGTTCTATGCAATACCGAGCTGCTGTCTCT 60
consensus_8614#1      ------------------------------------------------------------
                                                                                  

consensus_8614#0      GCAATCTGATATGGATCAACTGTTCCTGGAGAAGATGGAAGCAGAGACTCAATGCTTCAT 120
consensus_8614#1      ------------------------------------------------------------
                                                                                  

consensus_8614#0      CCTGACAAGAGCATCGCAAGCTTGGAATCCCCTGACTGAGGATCAAGCTGCTATTTTTGA 180
consensus_8614#1      ---------------------------TTCCTCCTTTTAGGATC---CCTCCAAGATCGA 30
                                                 * **     * ******   *  * *   * **

consensus_8614#0      CATTCAGAAATCTCTACCTGAGGATCACAAACAGCTTGA-AGCTAAGCTACGGCACACCG 239
consensus_8614#1      GGCC----GATCCCCACCATGCGCGCCCACCGATCCCGACAGCTCGTGTCCCGCGATCCC 86
                               *** * ***    *  * **   * *  ** ****    * * **   ** 

consensus_8614#0      AGAACAGGGCACTGATGCTAGAGGAGATGGTGGAGAAGCTAGAGGCACAGTGCAAAGATC 299
consensus_8614#1      ATGGCGGTTCTCTGATCCCATCTG----GCTCGCGAAGCC-GCCGCGTTTTG-ACGGGAA 140
                      *   * *  * ***** * *   *    * * * *****  *  **    ** *  *   

consensus_8614#0      TTGCTAGGACTTCAGAAATCCTGAAGCTGCAGGCAAGAGCAAGCAGAGCTTCGCTGTTTT 359
consensus_8614#1      TTGCGTGGGCTGCGGGCGGCTGGACGCCATGGATTCCGGCGGCAACAGCGTGA--ATTCT 198
                      ****  ** ** * *    *  ** **    *      **    * *** *     ** *

consensus_8614#0      GCTCCGTCCAGTTTGTTCTGCTGTTCATCGCCGTCGGAACCTTCCTCGTCCGGCTATGGC 419
consensus_8614#1      GCG--GTGGAGTCGGTGGCGGAGT-CGCCGGCGCCGG---CTTCACCGGCGAGCAAT--C 250
                      **   **  ***  **   *  ** *  ** ** ***   ****  ** *  ** **  *

consensus_8614#0      CCTCTTCCTCTGAATTTGTACCTACCTGAGGTTAGAAAATCCGGCGCCCATGAGCCTTTG 479
consensus_8614#1      CCACCGCACCCG---CCGCGGTCACCAAGGGGCGTGGGCTACTGCGGTGGCGG-----TG 302
                      ** *  *  * *     *     ***   **        * * ***     *      **

consensus_8614#0      TGTAGGCATTCTTGAAAAGTTCCTTATTGTAATTTACTAAGCATTGGTCACCCTATAATT 539
consensus_8614#1      TAT-----CCCCCGGGAACACCACGAGGAGGGCTCACCTGGCTCCGGCGGCGGAAAAAGG 357
                      * *       *  *  **   *   *       * **   **   **   *   * **  

consensus_8614#0      TTTCAAGTCTGTAACATCAACTCAATTTTGCTAAGAATCTCCTCTTATCTTTATGGGAAT 599
consensus_8614#1      ACATAACCCGACAA-AGAAGGTTCCCACCGCGATGAACACCACAACAAACTGGACGGACC 416
                          **  *   ** *  *  *       ** * ***   *     *   *    ***  

consensus_8614#0      TCAATCAC-ATGTACTTCTCGAT--TATCTGGATTCTGTAAATGTCAAAGTTCCTATATA 656
consensus_8614#1      AAAACAGCGAAGCTCTGCTTGATCTTGCCTGCACCT------------------------ 452
                        **   * * *  ** ** ***  *  *** *                           

consensus_8614#0      AATGTATTTCTTTCAGACCGTATAAAAAAAA 687
consensus_8614#1      -------------------------------