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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8618#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1075 fasta sequence
[GGAGATCGTCGTGTTCCTCGACTACGACGGCACCCTCTCCCCCATCGTCGCCGACCCCGACCGCGCCTTCATGTCCGACGAAATGAGAGAGGCGGTGAGAGGCGTGGCGAAGCACTTCCCGACGGCGATCGTGAGCGGGAGGTGCATCGACAAGGTGTTCGACTTTGTGAAGCTGGAGGAGCTGTACTACGCCGGGAGCCATGGAATGGACATCAGGGGCCCCACCGCGGCAGCGTCGGAGTACAACCACAACATGAAGGCAAAGCAGGGTGATGCTGTTACTTTCCAGCCGGCCGCCGATTTCCTGCCCGTCATCGAGGAGGTGTATCATGTGCTGAAGGAGAGGATGGCGAGTATAAGGGGTTCGCTGGTGGAGAACAACAAGTTTTGCCTTTCCGTGCACTACCGCTGCGTCGACGAGGCGGAATGGGGCGTGCTGGACGGCAAGGTGAGGGCGGTGATAGAGGGCTACCCGGATCTCCGTCTCAGCAAGGGGAGAAAGGTGCTGGAGATCCGCCCTGTCATCGACTGGGACAAAGGCTCCGCACTCCAGTTCCTGCTCAAATCTCTCGGTTATGAGGGGCGCAACAATGTTTTCCCGATATACA-TTGGAGATGACCGCACCGACGAGGATGCTTTCAAGGTGTTGCGCAACATGGGACAGGGCATAGGAATCCTTGTGACCAAGGTCCCAAAGGAGACAGCTGCATCCTACACTCTGCGAGAGCCATCCGAGGTGAAGGAGTTCCTGCGCAAGTTGGTGAAGATTAAGATCAACGGGGACAAAGGGCTGATTGGCAAGTAGCTGATCCAAGGCATATAGCTAGCTAGCTAGCTTTTTGTTCCTTAATTTGTCTCTTTCCTTTTGGTCCATTAGAAGAAGAAGAAGAACAACAACAAGAGTTATATGCATGGATGGTAACTGATCATGCATGATCGATGCATGCGGTGGTGAAAACCCGGGCTTTTGGCTTTGAAGGTGTCTATTACCGTATCCTTCTGGCCAAGGTCCTGTAATTAAATTTTGCTGCCGTGACAACAGAAATCTCAGCAAGAGGGACACAAGTGTGGCCTT]
[+] EMBL AK109902 [GGAGATCGTCGTGTTCCTCGACTACGACGGCACCCTCTCCCCCATCGTCGCCGACCCCGACCGCGCCTTCATGTCCGACGAAATGAGAGAGGCGGTGAGAGGCGTGGCGAAGCACTTCCCGACGGCGATCGTGAGCGGGAGGTGCATCGACAAGGTGTTCGACTTTGTGAAGCTGGAGGAGCTGTACTACGCCGGGAGCCATGGAATGGACATCAGGGGCCCCACCGCGGCAGCGTCGGAGTACAACCACAACATGAAGGCAAAGCAGGGTGATGCTGTTACTTTCCAGCCGGCCGCCGATTTCCTGCCCGTCATCGAGGAGGTGTATCATGTGCTGAAGGAGAGGATGGCGAGTATAAGGGGTTCGCTGGTGGAGAACAACAAGTTTTGCCTTTCCGTGCACTACCGCTGCGTCGACGAGGCGGAATGGGGCGTGCTGGACGGCAAGGTGAGGGCGGTGATAGAGGGCTACCCGGATCTCCGTCTCAGCAAGGGGAGAAAGGTGCTGGAGATCCGCCCTGTCATCGACTGGGACAAAGGCTCCGCACTCCAGTTCCTGCTCAAATCTCTCGGTTATGAGGGGCGCAACAATGTTTTCCCGATATACA TTGGAGATGACCGCACCGACGAGGATGCTTTCAAGGTGTTGCGCAACATGGGACAGGGCATAGGAATCCTTGTGACCAAGGTCCCAAAGGAGACAGCTGCATCCTACACTCTGCGAGAGCCATCCGAGGTGAAGGAGTTCCTGCGCAAGTTGGTGAAGATTAAGATCAACGGGGACAAAGGGCTGATTGGCAAGTAGCTGATCCAAGGCATATAGCTAGCTAGCTAGCTTTTTGTTCCTTAATTTGTCTCTTTCCTTTTGGTCCATTAGAAGAAGAAGAAGAACAACAACAAGAGTTATATGCATGGATGGTAACTGATCATGCATGATCGATGCATGCGGTGGTGAAAACCCGGGCTTTTGGCTTTGAAGGTGTCTATTACCGTATCCTTCTGGCCAAGGTCCTGTAATTAAATTTTGCTGCCGTGACAACAGAAATCTCAGCAAGAGGGACACAAGTGTGGCC ]
[+] EMBL CA764339 [ GCTGGAGATCCGCCCTGTCATCGACTGGGACAAAGGCTCCGCACTCCAGTTCCTGCTCAAATCTCTCGGTTATGAGGGGCGCAACAATGTTTTCCCGATATACATTTGGAGACGACCGCACCGACGAGGATGCTTTCAAGGTGTTGCGCAACATGGGACAGGGCATAGGAATCCTTGTGACCAAGGTCCCAAAGGAGACAGCTGCATCCTACACTCTGCGAGAGCCATCCGAGGTGAAGGAGTTCCTGCGCAAGTTGGTGAAGATTAAGATCAACGGGGACAAAGGGCTGATTGGCAAGTAGCTGATCCAAGGCATATAGCTAGCTAGCTAGCTTTTTGTTCCTTAATTTGTCTCTTTCCTTTTGGTCCATTAGAAGAAGAAGAACAACAACAACAAGAGTTATATGCATGGATGGTAACTGATCATGCATGATCGATGCATGCGGTGGTGAAAACCCGGGCTTTTGGCTTTGAAGGTGTCTATTACCGTATCCTTCTGGCCAAGGTCCTGTAATTAAATTTTGCTGCCGTGACAACAGAAATCTCAGCAAGAGGGACACAAGTGTGGCC ]
[+] EMBL AA751294 [ TGCATGATCGATGCATGCGGTGGTGAAAACCCGGGCTTTTGGCTTTGAAGGTGTCTATTACCGTATCCTTCTGGCCAAGGTCCTGTAATTAAATTTTGCTGCCGTGACAACAGAAATCTCAGCAAGAGGGACACAAGTGTGGCCTT]
consensusID : consensus_8618#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 744 fasta sequence
[CTTGGGGTGTTCTTGACTGGAAGGTTTCTTTGGTGATGGCGAAGGCGAGCGTGGTGGTGCCTGAGCAGGTGGGCGCGGCGGCGGCGGCGCAGGTGGGGTGCCCCTGTCCGGGCACGACGCTGTTCCCGTACCCGCCGCCGCGCGCCGGGATCGCCGTGCGGCGCAAGTGCCTGCAGGCGGCGCAGCAGCTGGAGCTCGGCGCCGGGCTGCGCGGCGGCTGGGTGGAGTCCATGCGGGCGTCGTCGCCCACCCACGCCAAGGCCGCCGCCGCCCTCGCCGCCGGCGT-CGACGAGGAGCACGCCGCCTGGATGGCGAGGCACCCGTCGGCGCTGGGCGAGTTCGAGAAGGTGGTGGCGGCGTCGAAGGGGAAGCAGATCGTCATGTTCCTCGACTACGACGGCACCCTCTCCCCCATCGTCGACGACCCCGACGCCGCCTTCATGAGCGAGACGATGCGGATGGCCGTGCGCAGCGTGGCGAAGCAC-TTCCCGACGGCGATCGTGAGCGGGCGGTGCCGCGACAAGGTGTTCGAGTTCGTGAAGCTCGCCGAGCTGTACTACGCGGGGAGCCACGGCATGGACATCAAGGGCCCCGCCTCCCGCCACGCCGCCGCCAAGTCTCCTCCCCACAACAAGGGAGTCCTCTTCCAGCCGGCCAGCGAGTTCCTCCCCATGATCGAGCATGTGCACCAGCGACTCGAGCAGGCCACCAGCTCCATCCCGGGCGCTCAGGTCGAGAACAACA]
[+] EMBL CB644544 [CTTGGGGTGTTCTTGACTGGAAGGTTTCTTTGGTGATGGCGAAGGCGAGCGTGGTGGTGCCTGAGCAGGTGGGCGCGGCGGCGGCGGCGCAGGTGGGGTGCCCCTGTCCGGGCACGACGCTGTTCCCGTACCCGCCGCCGCGCGCCGGGATCGCCGTGCGGCGCAAGTGCCTGCAGGCGGCGCAGCAGCTGGAGCTCGGCGCCGGGCTGCGCGGCGGCTGGGTGGAGTCCATGCGGGCGTCGTCGCCCACCCACGCCAAGGCCGCCGCCGCCCTCGCCGCCGGCGT CGACGAGGAGCACGCCGCCTGGATGGCGAGGCACCCGTCGGCGCTGGGCGAGTTCGAGAAGGTGGTGGCGGCGTCGAAGGGGAAGCAGATCGTCATGTTCCTCGACTACGACGGCACCCTCTCCCCCATCGTCGACGACCCCGACGCCGCCTTCATGAGCGAGACGATGCGGATGGCCGTGCGCAGCGTGGCGAAGCAC TTCCCGACGGCGATCGTGAGCGGGCGGTGCCGCGACAAGGTGTTCGAGTTCGTGAAGCTCGCCGAGCTGTACTACGCGGGGAGCCACGGCATGGACATCAAGGGCCCCGCCTCCCGCCACGCCGCCGCCAAGTCTCCTCCCCACAACAAGGGAGTCCTCTTCCAGCCGGCCAGCGAGTTCCTCCCCATGATCGAGCATGTGCACCAGCGACTCGAGCAGGCCACCAGCTCCATCCCGGGCGCTCAGGTCGAGAACAACA]
[+] EMBL AU032093 [ ACGCTGTTCCCGTACCCGCCGCCGCGCGCCGGGATCGCCGTGCGGCGCAAGTGCCTGCAGGCGGCGCA NAGCTGGAGCTCGGCGCCGGGCTGCGCGGCGGCTGGGTGGAGTCCATGCGGGCGTCGTCGCCCACCCACGCCAAGGCCGCCGTCGCCCTCGCCGCCGG GTNCGACGAGGAGCACGCCGCCTGGATGGCGAGGCACCCGTCGGCGCTGGGCGAGTTCGAGAAGGTGGTGGCGGCGTCGAAGGGGAAGCAGATCGTCATGTTCCTCGACTACGACGGCACCCTCTTCCCCATCGTCGACGACCCCGACGNCGACTTCATGAGCGAGACGATGCGGATGGCCGTGCGCAG TTTGCGAAG ACTTTNCCGACGGCGATCGTGAGCGGGCGG ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8618#0 GGAGATCGTCGTGTTCCTCGACTACGACGGCACCCTCTCCCCCATCGTCGCCGACCCCGA 60
consensus_8618#1 ------------------------------------------------------------
consensus_8618#0 CCGCGCCTTCATGTCCGACGAAATGAGAGAGGCGGTGAGAGGCGTGGCGAAGCACTTCCC 120
consensus_8618#1 ----------------------------------------------------------CT 2
*
consensus_8618#0 GACGGCGATCGTGAGCGGGAGGTG-CATCGACAA----GGTGTTCGACTTTGTGAAGCTG 175
consensus_8618#1 TGGGGTGTTCTTGACTGGAAGGTTTCTTTGGTGATGGCGAAGGCGAGCGTGGTGGTGCCT 62
** * ** *** ** **** * * * * * * * * *** **
consensus_8618#0 GAGGAGCTGTACTACGCCGGGAGCCATGGAA-TGGACATCAGGGGCCCCACCGCGGCAGC 234
consensus_8618#1 GAGCAGGTGGGC-GCGGCGGCGGCGGCGCAGGTGGGGTGCCCCTGTCCGGGCACGACGCT 121
*** ** ** * ** *** ** * * *** * * ** * ** *
consensus_8618#0 GTCGGAGTACA-ACCACAACATGAAGGCAAAGCAGGGTGATGCTGTTACTTTCCAGCCGG 293
consensus_8618#1 GTTCCCGTACCCGCCGCCGCGCGCCGGGATCGCCGTGCGGCGCAAGTGCCT----GCAGG 177
** **** ** * * * ** * ** * * * ** * * * ** **
consensus_8618#0 CCGCCGATTTCCTGCCCGTCATCGAGGAGGTGTATCATGTGCTGAAGGAGAGGATGGCGA 353
consensus_8618#1 CGGCGCAGCAGCTGGAGCTCGGCGCCGGGCTGCGCGGCG-GCTG--------GGTGGAGT 228
* ** * *** ** ** * * ** * **** * *** *
consensus_8618#0 GTATAAGGGGTTCGCTGGTGGAGAACAACAAGTTTTGCCTTTCCGTGCACTACCGCTGCG 413
consensus_8618#1 CCATGCGGGCGTCGTCGCCCACCCACGCCAAGGCC-GCCGCCGCCCTCGCCGCCG--GCG 285
** *** *** * ** **** *** * * * *** ***
consensus_8618#0 TCGACGAGGCGGAATGGGGCGTGCTGGACGGCAAGGTGAGGG-CGGTGATAGAGGGCTAC 472
consensus_8618#1 TCGACGAGG---AGCACGCCGC-CTGGATGGCGAGGCACCCGTCGGCGCTGGGCGAGTTC 341
********* * * ** ***** *** *** * *** * * * * * *
consensus_8618#0 CCGGATCTCCGTCTCAGCAAGGGGAGAAAGGTGCTGGAGATCCGCCCTGTCATCGACTGG 532
consensus_8618#1 GAGAA----GGTGGTGGC--GGCGTCGAAGGGGAAGCAGATCGTCATGTTCCTCGACTAC 395
* * ** ** ** * **** * * ***** * ** ******
consensus_8618#0 GACAAAGGCTCCGCACTCCAGTTC--CTGCTCAAATCTCTCGGTTATGAGGGGCGCAACA 590
consensus_8618#1 GACGGCACCCTCTCCCCCATCGTCGACGACCCCGACGCCGCCTTCATGAGCGAGACGATG 455
*** * * * * * ** * * * * * * * ***** * * *
consensus_8618#0 ATGTTTTCCCGATATACATTGGAGATGACCGCACCGACGAGGATGCTTTCAAGGTGTTGC 650
consensus_8618#1 CGGATGGCCGTGCGCAGCGTGGCGAAGCACTTCCCGACGGCGATCGTGAGCGGGCGGTGC 515
* * ** * *** ** * * ****** *** * ** * ***
consensus_8618#0 -GCAACATGGGACAGGGCATAGGAATCCTTGTGACCAAGGTCC-CAAAGGAGACAGCTGC 708
consensus_8618#1 CGCGACAAGGTGTTCGAGTTCGTGAAGCTCG---CCGAGCTGTACTACGCGGGGAGCCAC 572
** *** ** * * * * ** * ** ** * * * * * *** *
consensus_8618#0 ATCCTACACTCTGCGAGAGCCATCCGAGGTGAAGGAGTTCCTGCGCAAGTTGGTGAAGAT 768
consensus_8618#1 GGCATGGACATCAAGGGCCCCGCCTCCCGCCACGCCGCCGC----CAAGTCTCCTC---C 625
* * ** * * ** * * * * * * *****
consensus_8618#0 TAAGATCAACGGGGACAAAGGGCTGATTGGCAAGTAGCTGATCCAAGGCATATAGCTAGC 828
consensus_8618#1 CCACAACAAGGGAGTCCTCTTCCAGCCGGCCAGCGAGTTCCTCCCCATGATCGAGCATGT 685
* * *** ** * * * * * ** ** * *** ** *** *
consensus_8618#0 TAGCTAGCTTTTTGTTCCTTAATTTGTCTCTTTCCTTTTGGTCCATTAGAAGAAGAAGAA 888
consensus_8618#1 GCACCAGCGACTCGAGC---AGGCCACCAGCTCCATCCCGGGCGCTCAGGTCGAGAACAA 742
* *** * * * * * * * * ** * * ** **** **
consensus_8618#0 GAACAACAACAAGAGTTATATGCATGGATGGTAACTGATCATGCATGATCGATGCATGCG 948
consensus_8618#1 CA---------------------------------------------------------- 744
*
consensus_8618#0 GTGGTGAAAACCCGGGCTTTTGGCTTTGAAGGTGTCTATTACCGTATCCTTCTGGCCAAG 1008
consensus_8618#1 ------------------------------------------------------------
consensus_8618#0 GTCCTGTAATTAAATTTTGCTGCCGTGACAACAGAAATCTCAGCAAGAGGGACACAAGTG 1068
consensus_8618#1 ------------------------------------------------------------
consensus_8618#0 TGGCCTT 1075
consensus_8618#1 -------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||