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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8622#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1812 fasta sequence
[TTGGTCGAACAGGCGGCGCGGCGGCGGCGGCGCCTCGTCCGCGGTACAAGCGTGCGTTACCCATGGCCTCGCCGGCGACGGCGACGGCCTCCCTGTGCTGCCGCCTCGTCCGCCTCCCCTTGTTAGTGCCCTATGCCCGCCGCCGCTCGCCGCTCTCGACCCGGTGCTCCGCCGCGCAGAGCCCCGACGCGGTGGACAGGGAGTACGCCGACCTCAACCTCCGCCCGCTCTACCCCAACGTCCGCCCTCTTCTTCCTCCCCCCGGTCTTCCTTCCTTACCCCCCCCAAGTAGAGCGCGAGCGCCACCCGTCTCACCGCTCTCTTCTCGTGGTTCACGCAGAGGGGCCATCACCTGCGCATCCGGCAGCACGTCAACCCGCTCAGCTCCTCTTTCTCGCCCACGGAGCCACCGGAGTGGAAGGAGGTGTTCGAGGATCCCCTGCTGCCACTCATGGTCGACATTGGCTGCGGGAGCGGGAGGTTCTTGATTTGGCTTGCCAAGAACTCCGGTGAAAGGCGAAACTACCTCGGCCTGGAGATTCGGCAGAAGTTGGTGGAGCGGTCGCAGTTCTGGGTAACCGAGTTGGGGCTTAGGAATGTTTATTTTATGTTTGCAAATGCAACAGTGTCTTTCAACCAGATTGCGTCGTCGTACCCTGGTCCCCTGTCACTTGTTTCTATACTGTGTCCTGATCCCCATTTTAAGAAGAGGCATCACAAGAGAAGAGTTCTACAATCGCAGTTGGTGGATTCAATCACAAATAACCTCTGTTTAGGTGGACGGGTTCTTTTGCAATCGGATGTACTCGAAGTGGCTGCAGACATGAGGGAAAGGTTTGATGAATACTCGGATGTGTTTGAGCATGTTGACTGTATTGATAAAGATCTTCGATGTGACAATGAAGGATGGCTTCTGGACAACCCAATGGGCATACGGACAGAGAGAGAAGTACATGCAGAGTTAGAAGGAGCAACCATATACAGGAGGATGTACCAAAAAACTAGAGATGTTTCTCACTAGAGATGTTCATCGGTTCAGTGGACACAGGAGTTATCCAAGCGGTAATGGTTAATGGCGTTCAGCTTTAATCTTGCATCCTAAATCAAAGCAGCCATCTTTCACCCTCGGTCGTCTATTACTGAAGCAAGTTTCATTCACTGCGTGCAATTCAGACAGTCTTGATTTTTTCTTGTCAGATGTGATGAGCGAAACCTGCCAATGGTTCGCATCTCTCCAATGTTTTGGCCCATCTTTTTTCTGTCGGATCATTCCTACGACAGATATCTGCGGTGGTAACCATATGTAAGTTCAGCGTCTGCTAGTCCATGATCATGAGCTAATGAACAGCTTTCAGGGT-TGGGGTTGTTCTCTAGGAATCGAAGTGTAATGTGTCTTGGCAATCTTGATGGTGACTTTGATTATAAGGAAATTTTACAAACTTGCCGCAGCAAACTGACCATTTTTGAGACGCAGCTGCTAAAGAATGGTGTTTACAATAGAGAACTTGGCTCTCACTGGTGAAGTGGTGATAATAGGAGAGAAGGATGATCATGTTTTTTTCACATTACACTGTGTTATGATGTAGATCCCTGAACTTTGTATGGCCTGTAAATTGTAACCTTATGAATGTGTGGCAGCAGTGGACATTTTGCTAGCAACAGAATCATGCAATCTGAAGTAGCCGACAAACTTTTTTTTAGAGGAGCTTACAATCTTTGAGAATTGATATCACTGTATGGGTTTCATTCTACAATTCGTTTCACAGTAACCGCATGAATGAGTGAACTGCACATTTTGTGGCAAAAAAAAGA]
[+] EMBL AK099631 [TTGGTCGAACAGGCGGCGCGGCGGCGGCGGCGCCTCGTCCGCGGTACAAGCGTGCGTTACCCATGGCCTCGCCGGCGACGGCGACGGCCTCCCTGTGCTGCCGCCTCGTCCGCCTCCCCTTGTTAGTGCCCTATGCCCGCCGCCGCTCGCCGCTCTCGACCCGGTGCTCCGCCGCGCAGAGCCCCGACGCGGTGGACAGGGAGTACGCCGACCTCAACCTCCGCCCGCTCTACCCCAACGTCCGCCCTCTTCTTCCTCCCCCCGGTCTTCCTTCCTTACCCCCCCCAAGTAGAGCGCGAGCGCCACCCGTCTCACCGCTCTCTTCTCGTGGTTCACGCAGAGGGGCCATCACCTGCGCATCCGGCAGCACGTCAACCCGCTCAGCTCCTCTTTCTCGCCCACGGAGCCACCGGAGTGGAAGGAGGTGTTCGAGGATCCCCTGCTGCCACTCATGGTCGACATTGGCTGCGGGAGCGGGAGGTTCTTGATTTGGCTTGCCAAGAACTCCGGTGAAAGGCGAAACTACCTCGGCCTGGAGATTCGGCAGAAGTTGGTGGAGCGGTCGCAGTTCTGGGTAACCGAGTTGGGGCTTAGGAATGTTTATTTTATGTTTGCAAATGCAACAGTGTCTTTCAACCAGATTGCGTCGTCGTACCCTGGTCCCCTGTCACTTGTTTCTATACTGTGTCCTGATCCCCATTTTAAGAAGAGGCATCACAAGAGAAGAGTTCTACAATCGCAGTTGGTGGATTCAATCACAAATAACCTCTGTTTAGGTGGACGGGTTCTTTTGCAATCGGATGTACTCGAAGTGGCTGCAGACATGAGGGAAAGGTTTGATGAATACTCGGATGTGTTTGAGCATGTTGACTGTATTGATAAAGATCTTCGATGTGACAATGAAGGATGGCTTCTGGACAACCCAATGGGCATACGGACAGAGAGAGAAGTACATGCAGAGTTAGAAGGAGCAACCATATACAGGAGGATGTACCAAAAAACTAGAGATGTTTCTCACTAGAGATGTTCATCGGTTCAGTGGACACAGGAGTTATCCAAGCGGTAATGGTTAATGGCGTTCAGCTTTAATCTTGCATCCTAAATCAAAGCAGCCATCTTTCACCCTCGGTCGTCTATTACTGAAGCAAGTTTCATTCACTGCGTGCAATTCAGACAGTCTTGATTTTTTCTTGTCAGATGTGATGAGCGAAACCTGCCAATGGTTCGCATCTCTCCAATGTTTTGGCCCATCTTTTTTCTGTCGGATCATTCCTACGACAGATATCTGCGGTGGTAACCATATGTAAGTTCAGCGTCTGCTAGTCCATGATCATGAGCTAATGAACAGCTTTCAGGGT TGGGGTTGTTCTCTAGGAATCGAAGTGTAATGTGTCTTGGCAATCTTGATGGTGACTTTGATTATAAGGAAATTTTACAAACTTGCCGCAGCAAACTGACCATTTTTGAGACGCAGCTGCTAAAGAATGGTGTTTACAATAGAGAACTTGGCTCTCACTGGTGAAGTGGTGATAATAGGAGAGAAGGATGATCATGTTTTTTTCACATTACACTGTGTTATGATGTAGATCCCTGAACTTTGTATGGCCTGTAAATTGTAACCTTATGAATGTGTGGCAGCAGTGGACA ]
[+] EMBL AK061630 [ AATGAAGGATGGCTTCTGGACAACCCAATGGGCATACGGACAGAGAGAGAAGTACATGCAGAGTTAGAAGGAGCAACCATATACAGGAGGATGTACCAAAAAACTAGAGATGTTTCTCACTAGAGATGTTCATCGGTTCAGTGGACACAGGAGTTATCCAAGCGGTAATGGTTAATGGCGTTCAGCTTTAATCTTGCATCCTAAATCAAAGCAGCCATCTTTCACCCTCGGTCGTCTATTACTGAAGCAAGTTTCATTCACTGCGTGCAATTCAGACAGTCTTGATTTTTTCTTGTCAGATGTGATGAGCGAAACCTGCCAATGGTTCGCATCTCTCCAATGTTTTGGCCCATCTTTTTTCTGTCGGATCATTCCTACGACAGATATCTGCGGTGGTAACCATATGTAAGTTCAGCGTCTGCTAGTCCATGATCATGAGCTAATGAACAGCTTTCAGGGT TGGGGTTGTTCTCTAGGAATCGAAGTGTAATGTGTCTTGGCAATCTTGATGGTGACTTTGATTATAAGGAAATTTTACAAACTTGCCGCAGCAAACTGACCATTTTTGAGACGCAGCTGCTAAAGAATGGTGTTTACAATAGAGAACTTGGCTCTCACTGGTGAAGTGGTGATAATAGGAGAGAAGGATGATCATGTTTTTTTCACATTACACTGTGTTATGATGTAGATCCCTGAACTTTGTATGGCCTGTAAATTGTAACCTTATGAATGTGTGGCAGCAGTGGACATTTTGCTAGCAACAGAATCATGCAATCTGAAGTAGCCGACAAACTTTTTTTTAGAGGAGCTTACAATCTTTGAGAATTGATATCACTGTATGGGTTTCATTCTACAATTCGTTTCACAGTAACCGCATGAATG ]
[-] EMBL CB652172 [ GGTTCAGTGGACACAGGAGTTATCCAAGCGGTAATGGTTAATGGCGTTCAGCTTTAATCTTGCATCNTAAATCAAAGCAGCCATCTTTCACCCTCGGTCGTCTATTACTGAAGCAAGTTTCATTCACTGCGTGCAATTCAGACAGTCTTGATTTTTTCTTGTCAGATGTGATGAGCGAAACCTGCCAATGGTTCGCATCTCTCCAATGTTTTGGCCCATCTTTTTTCTGTCGGATCATTCCTACGACAGATATCTGCGGTGGTAACCATATGTAAGTTCAGCGTCTGCTAGTCCATGATCATGAGCTAATGAACAGCTTTCAGGGT TGGGGTTGTTCTCTAGGAATCGAAGTGTAATGTGTCTTGGCAATCTTGATGGTGACTTTGATTATAAGGAAATTTTACAAACTTGCCGCAGCAAACTGACCATTTTTGAGACGCAGCTGCTAAAGAATGGTGTTTACAATAGAGAACTTGGCTCTCACTGGTGAAGTGGTGATAATAGGAGAGAAGGATGATCATGTTTTTTTCACATTACACTGTGTTATGATGTAGATCCCTGAACTTTGTATGGCCTGTAAATTGTAACCTTATGAATGTGTGGCAGCAGTGGACATTTTGCTAGCAACAGAATCATGCAATCTGAAGTAGCCGACAAACTTTTTTTTAGAGGAGCTTACAATCTTTGAGAATTGATATCACTGTATGGGTTTCATTCTACAATTCGTTTCACAGTAACGGCATGAATGAGTGAACTGCACATTTTGTGGCAAAAAAAAGA]
[+] EMBL AA751194 [ ATTTTTTCTTGTCAGATGTGATGAGCGAAACCTGCCAATGGTTCGCATCTCTCCAATGTTTTGGCCCATCTTTTTTCTGTCGGATCATTCCTACGACAGATATCTGCGGTGGTAACCATATGTAAGTTCAGCGTCTGSTAGTCCATGATCATGAGCTAATGAACAGCTTTCAGGGTYCGGGGTTGTTCTCTAGGA ]
consensusID : consensus_8622#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 711 fasta sequence
[GATGTTTCTCACTAGAGATGTTCATCGGTTCAGTGGACACAGGAGTTATCCAAGCGGTAATGGTTAATGGCGTTCAGCTTTAATCTTGCATCCTAAATCAAAGCAGCCATTTTTCACCCTCGGTGGTTTATTACTGAAGCAAGTTTCATTCACTGGGTGCAATTCAGACAGTTTTGATTTTTTTTTGTCAGATGTGATGAGGGAAACCTGCCAATGGTTCGCATTTTTCCAATGTTTTGGCCCATTTTTTTTTTGTCGGATCATTCCTACGACAGATATTTGCGGTGGTAACCATATGTAAGTTCAGCGTTTGTTAGTCCATGATCATGAGCTAATGAACAGCTTTCAGGGTTGGGGTTGTTTTTTAGGAATCGAAGTGTAATGTGTCTTGGCAATCTTGATGGTGACTTTGATTATAAGGAAATTTTACAAACTTGCCGCAGCAAACTGACCATTTTTGAGACGCAGCTGTTAAAGAATGGTGTTTACAATAGAGAACTTGGCTTTCACTGGTGAAGTGGTGATAATAGGAGAGAAGGATGATCATGTTTTTTTCACATTACACTGTGTTATGATGTAGATCCCTGAACTTTGTATGGCCTGTAAATTGTAACCTTATGAATGTGTGGCAGCAGTGGACATTTTGTTAGCAACAGAATCATGCAATTTGAAGTAGGGGGCAAACTTTTTTTTAAAAAAAAAAAAAAAAAA]
[-] EMBL CB650841 [GATGTTTCTCACTAGAGATGTTCATCGGTTCAGTGGACACAGGAGTTATCCAAGCGGTAATGGTTAATGGCGTTCAGCTTTAATCTTGCATCCTAAATCAAAGCAGCCATTTTTCACCCTCGGTGGTTTATTACTGAAGCAAGTTTCATTCACTGGGTGCAATTCAGACAGTTTTGATTTTTTTTTGTCAGATGTGATGAGGGAAACCTGCCAATGGTTCGCATTTTTCCAATGTTTTGGCCCATTTTTTTTTTGTCGGATCATTCCTACGACAGATATTTGCGGTGGTAACCATATGTAAGTTCAGCGTTTGTTAGTCCATGATCATGAGCTAATGAACAGCTTTCAGGGTTGGGGTTGTTTTTTAGGAATCGAAGTGTAATGTGTCTTGGCAATCTTGATGGTGACTTTGATTATAAGGAAATTTTACAAACTTGCCGCAGCAAACTGACCATTTTTGAGACGCAGCTGTTAAAGAATGGTGTTTACAATAGAGAACTTGGCTTTCACTGGTGAAGTGGTGATAATAGGAGAGAAGGATGATCATGTTTTTTTCACATTACACTGTGTTATGATGTAGATCCCTGAACTTTGTATGGCCTGTAAATTGTAACCTTATGAATGTGTGGCAGCAGTGGACATTTTGTTAGCAACAGAATCATGCAATTTGAAGTAGGGGGCAAACTTTTTTTTAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8622#0 TTGGTCGAACAGGCGGCGCGGCGGCGGCGGCGCCTCGTCCGCGGTACAAGCGTGCGTTAC 60
consensus_8622#1 ------------------------------------------------------------
consensus_8622#0 CCATGGCCTCGCCGGCGACGGCGACGGCCTCCCTGTGCTGCCGCCTCGTCCGCCTCCCCT 120
consensus_8622#1 ------------------------------------------------------------
consensus_8622#0 TGTTAGTGCCCTATGCCCGCCGCCGCTCGCCGCTCTCGACCCGGTGCTCCGCCGCGCAGA 180
consensus_8622#1 ------------------------------------------------------------
consensus_8622#0 GCCCCGACGCGGTGGACAGGGAGTACGCCGACCTCAACCTCCGCCCGCTCTACCCCAACG 240
consensus_8622#1 ------------------------------------------------------------
consensus_8622#0 TCCGCCCTCTTCTTCCTCCCCCCGGTCTTCCTTCCTTACCCCCCCCAAGTAGAGCGCGAG 300
consensus_8622#1 ------------------------------------------------------------
consensus_8622#0 CGCCACCCGTCTCACCGCTCTCTTCTCGTGGTTCACGCAGAGGGGCCATCACCTGCGCAT 360
consensus_8622#1 ------------------------------------------------------------
consensus_8622#0 CCGGCAGCACGTCAACCCGCTCAGCTCCTCTTTCTCGCCCACGGAGCCACCGGAGTGGAA 420
consensus_8622#1 ------------------------------------------------------------
consensus_8622#0 GGAGGTGTTCGAGGATCCCCTGCTGCCACTCATGGTCGACATTGGCTGCGGGAGCGGGAG 480
consensus_8622#1 ------------------------------------------------------------
consensus_8622#0 GTTCTTGATTTGGCTTGCCAAGAACTCCGGTGAAAGGCGAAACTACCTCGGCCTGGAGAT 540
consensus_8622#1 ------------------------------------------------------------
consensus_8622#0 TCGGCAGAAGTTGGTGGAGCGGTCGCAGTTCTGGGTAACCGAGTTGGGGCTTAGGAATGT 600
consensus_8622#1 ------------------------------------------------------------
consensus_8622#0 TTATTTTATGTTTGCAAATGCAACAGTGTCTTTCAACCAGATTGCGTCGTCGTACCCTGG 660
consensus_8622#1 ------------------------------------------------------------
consensus_8622#0 TCCCCTGTCACTTGTTTCTATACTGTGTCCTGATCCCCATTTTAAGAAGAGGCATCACAA 720
consensus_8622#1 ------------------------------------------------------------
consensus_8622#0 GAGAAGAGTTCTACAATCGCAGTTGGTGGATTCAATCACAAATAACCTCTGTTTAGGTGG 780
consensus_8622#1 ------------------------------------------------------------
consensus_8622#0 ACGGGTTCTTTTGCAATCGGATGTACTCGAAGTGGCTGCAGACATGAGGGAAAGGTTTGA 840
consensus_8622#1 ------------------------------------------------------------
consensus_8622#0 TGAATACTCGGATGTGTTTGAGCATGTTGACTGTATTGATAAAGATCTTCGATGTGACAA 900
consensus_8622#1 ------------------------------------------------------------
consensus_8622#0 TGAAGGATGGCTTCTGGACAACCCAATGGGCATACGGACAGAGAGAGAAGTACATGCAGA 960
consensus_8622#1 ------------------------------------------------------------
consensus_8622#0 GTTAGAAGGAGCAACCATATACAGGAGGATGTACCAAAAAACTAGAGATGTTTCTCACTA 1020
consensus_8622#1 ----------------------------------------------GATGTTTCTCACTA 14
**************
consensus_8622#0 GAGATGTTCATCGGTTCAGTGGACACAGGAGTTATCCAAGCGGTAATGGTTAATGGCGTT 1080
consensus_8622#1 GAGATGTTCATCGGTTCAGTGGACACAGGAGTTATCCAAGCGGTAATGGTTAATGGCGTT 74
************************************************************
consensus_8622#0 CAGCTTTAATCTTGCATCCTAAATCAAAGCAGCCATCTTTCACCCTCGGTCGTCTATTAC 1140
consensus_8622#1 CAGCTTTAATCTTGCATCCTAAATCAAAGCAGCCATTTTTCACCCTCGGTGGTTTATTAC 134
************************************ ************* ** ******
consensus_8622#0 TGAAGCAAGTTTCATTCACTGCGTGCAATTCAGACAGTCTTGATTTTTTCTTGTCAGATG 1200
consensus_8622#1 TGAAGCAAGTTTCATTCACTGGGTGCAATTCAGACAGTTTTGATTTTTTTTTGTCAGATG 194
********************* **************** ********** **********
consensus_8622#0 TGATGAGCGAAACCTGCCAATGGTTCGCATCTCTCCAATGTTTTGGCCCATCTTTTTTCT 1260
consensus_8622#1 TGATGAGGGAAACCTGCCAATGGTTCGCATTTTTCCAATGTTTTGGCCCATTTTTTTTTT 254
******* ********************** * ****************** ****** *
consensus_8622#0 GTCGGATCATTCCTACGACAGATATCTGCGGTGGTAACCATATGTAAGTTCAGCGTCTGC 1320
consensus_8622#1 GTCGGATCATTCCTACGACAGATATTTGCGGTGGTAACCATATGTAAGTTCAGCGTTTGT 314
************************* ****************************** **
consensus_8622#0 TAGTCCATGATCATGAGCTAATGAACAGCTTTCAGGGTTGGGGTTGTTCTCTAGGAATCG 1380
consensus_8622#1 TAGTCCATGATCATGAGCTAATGAACAGCTTTCAGGGTTGGGGTTGTTTTTTAGGAATCG 374
************************************************ * *********
consensus_8622#0 AAGTGTAATGTGTCTTGGCAATCTTGATGGTGACTTTGATTATAAGGAAATTTTACAAAC 1440
consensus_8622#1 AAGTGTAATGTGTCTTGGCAATCTTGATGGTGACTTTGATTATAAGGAAATTTTACAAAC 434
************************************************************
consensus_8622#0 TTGCCGCAGCAAACTGACCATTTTTGAGACGCAGCTGCTAAAGAATGGTGTTTACAATAG 1500
consensus_8622#1 TTGCCGCAGCAAACTGACCATTTTTGAGACGCAGCTGTTAAAGAATGGTGTTTACAATAG 494
************************************* **********************
consensus_8622#0 AGAACTTGGCTCTCACTGGTGAAGTGGTGATAATAGGAGAGAAGGATGATCATGTTTTTT 1560
consensus_8622#1 AGAACTTGGCTTTCACTGGTGAAGTGGTGATAATAGGAGAGAAGGATGATCATGTTTTTT 554
*********** ************************************************
consensus_8622#0 TCACATTACACTGTGTTATGATGTAGATCCCTGAACTTTGTATGGCCTGTAAATTGTAAC 1620
consensus_8622#1 TCACATTACACTGTGTTATGATGTAGATCCCTGAACTTTGTATGGCCTGTAAATTGTAAC 614
************************************************************
consensus_8622#0 CTTATGAATGTGTGGCAGCAGTGGACATTTTGCTAGCAACAGAATCATGCAATCTGAAGT 1680
consensus_8622#1 CTTATGAATGTGTGGCAGCAGTGGACATTTTGTTAGCAACAGAATCATGCAATTTGAAGT 674
******************************** ******************** ******
consensus_8622#0 AGCCGACAAACTTTTTTTTAGAGGAGCTTACAATCTTTGAGAATTGATATCACTGTATGG 1740
consensus_8622#1 AGGGGGCAAACTTTTTTTTAAAAAAAAAAAAAAAAAA----------------------- 711
** * ************** * * * **
consensus_8622#0 GTTTCATTCTACAATTCGTTTCACAGTAACCGCATGAATGAGTGAACTGCACATTTTGTG 1800
consensus_8622#1 ------------------------------------------------------------
consensus_8622#0 GCAAAAAAAAGA 1812
consensus_8622#1 ------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||