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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8623#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 828 fasta sequence
[TACGCTACAGCTGGGATACTCCAAGGCACTGAGACAGTTGGAAATTGTAGACTGCAAGTTACTTGCTTCAGTCGAGGGCTTTGGATCCTTGACAGACCTTCTGTTATTGACAGTACACAACTCACCCAATTTACCTCAGTGTTTCAAGCTTCTTTCACAGCAGCGAGGGGCCTCTACGATCTTGTCCCGACTGAAGAGCATTCCTTGTAATCTTGCCACTGCAACTTTCCTGATGGACGGATCGTGACACAGCGTCACCGGCCGTCTCACCACCAGTTCCTACGACTTCGCACTGTTTGATCTGGGGCATACAAGACAAAAGTCATTGTTTTCATTCTTGTGCATCTCCTGGTTGGTGCCTCGTGTTTGACGTGCTGTCGATGGCCCGAACACTTTAACTCCCAACATTGTATGTCCTGATGTGGTTGTCTTTTTAAGGTCTTCCTAAATGCATTGCTCAGGACTTCAGGAGGGACGACTGTTCCTTCAAGAGGCCTGCTGAAAGCTCAGAATTTTGGTCCAAACGGCTGTGATACTCGTGCAAGCAAAGGGTCAATTGCCTCTGTTACATAATATGGAACACAAGTAGCATACATGGATTTTGCAGACAGNTAATGGTTCCTTGTCGAAAGCGNTTGAGTTGAATTGATCTGACCTCGGTGACTTCAACATTCGGTGATGACCTCTTTCCCCTATGCGATTNCAGGGAATTACAAAGGATTTTCTTGNGGATGACGGGGCTGNCAGTCCGGTATATTCTGGTATCTATTACTTCCTCTGANAAANANATTTGATGGTTANAACATTATTTGGNTNAAANTTTGNAAA]
[+] EMBL CA764348 [TACGCTACAGCTGGGATACTCCAAGGCACTGAGACAGTTGGAAATTGTAGACTGCAAGTTACTTGCTTCAGTCGAGGGCTTTGGATCCTTGACAGACCTTCTGTTATTGACAGTACACAACTCACCCAATTTACCTCAGTGTTTCAAGCTTCTTTCACAGCAGCGAGGGGCCTCTACGATCTTGTCCCGACTGAAGAGCATTCCTTGTAATCTTGCCACTGCAACTTTCCTGATGGACGGATCGTGACACAGCGTCACCGGCCGTCTCACCACCAGTTCCTACGACTTCGCACTGTTTGATCTGGGGCATACAAGACAAAAGTCATTGTTTTCATTCTTGTGCATCTCCTGGTTGGTGCCTCGTGTTTGACGTGCTGTCGATGGCCCGAACACTTTAACTCCCAACATTGTATGTCCTGATGTGGTTGTCTTTTTAAGGTCTTCCTAAATGCATTGCTCAGGACTTCAGGAGGGACGACTGTTCCTTCAAGAGGCCTGCTGAAAGCTCAGAATTTTGGTCCAAACGGCTGTGATACTCGTGCAAGCAAAGGGTCAATTGCCTCTGTTACATAATATGGAACACAAGTAGCATACATGGATTTTGCAGACAGNTAATGGTTCCTTGTCGAAAGCGNTTGAGTTGAATTGATCTGACCTCGGTGACTTCAACATTCGGTGATGACCTCTTTCCCCTATGCGATTNCAGGGAATTACAAAGGATTTTCTTGNGGATGACGGGGCTGNCAGTCCGGTATATTCTGGTATCTATTACTTCCTCTGANAAANANATTTGATGGTTANAACATTATTTGGNTNAAANTTTGNAAA]
consensusID : consensus_8623#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 718 fasta sequence
[TGTCTACCGTGTGGGATCTCAAACTGCAGGAGCTTGAACAGGGCAGTAATCAGGTTCCACCGCCACCTCCGTCACTTGACACATTCCTTATCACGAATCTCACAGACAAGGTACAGTCTCGTCTGCTGTCCTTCCTCCCTACCATCACAAATTTAGTCATATCAGAAAGTCCAGAGTTGACATCTCTGCAGCTGGGATACTCCAAGGCACTGAAAGAGTTGGAAATTGTAGACTGCAAGTCACTTGCTTCAGTTGAGGGCTTTGGATCCTTGACAAACCTTAGGTTCTTGACAGTATATGAATCGCCCAGCATGCCTCAATGTTTTGAGATTCTATCACAACAACATGGGGCCTCTGAGATCTTGTCCCGACTGGAAAATCTTCAGATCAGTGATGGCTTTATCCTTACTGTTTCCCTCTGCAAACAGCTCACGTCTCTGAGAGATCTATTCTTCTGGCCTGAACGAAGCAAGCCTGATGCGACGATGATGGGTCTGACAGAGGAACAAGAGAGAGCACTCCAGCTTCTGACATCCCTCGAACGTCTCAACTTTTGGGGGTTGCCGAATCTCTTGTCCCTTCCTGCAAATCTAGCAAGCCTGACCTCCCTCGAGTGGTTAGATATCTCAGACTGCCCCCGCATGGCAAGGCTGCCAGAGATGGGCCTTCCACCATCGTTGAGGAGATTATCTTTATGCCGTTGCAGCGACGACCTAAG]
[+] EMBL CB645299 [TGTCTACCGTGTGGGATCTCAAACTGCAGGAGCTTGAACAGGGCAGTAATCAGGTTCCACCGCCACCTCCGTCACTTGACACATTCCTTATCACGAATCTCACAGACAAGGTACAGTCTCGTCTGCTGTCCTTCCTCCCTACCATCACAAATTTAGTCATATCAGAAAGTCCAGAGTTGACATCTCTGCAGCTGGGATACTCCAAGGCACTGAAAGAGTTGGAAATTGTAGACTGCAAGTCACTTGCTTCAGTTGAGGGCTTTGGATCCTTGACAAACCTTAGGTTCTTGACAGTATATGAATCGCCCAGCATGCCTCAATGTTTTGAGATTCTATCACAACAACATGGGGCCTCTGAGATCTTGTCCCGACTGGAAAATCTTCAGATCAGTGATGGCTTTATCCTTACTGTTTCCCTCTGCAAACAGCTCACGTCTCTGAGAGATCTATTCTTCTGGCCTGAACGAAGCAAGCCTGATGCGACGATGATGGGTCTGACAGAGGAACAAGAGAGAGCACTCCAGCTTCTGACATCCCTCGAACGTCTCAACTTTTGGGGGTTGCCGAATCTCTTGTCCCTTCCTGCAAATCTAGCAAGCCTGACCTCCCTCGAGTGGTTAGATATCTCAGACTGCCCCCGCATGGCAAGGCTGCCAGAGATGGGCCTTCCACCATCGTTGAGGAGATTATCTTTATGCCGTTGCAGCGACGACCTAAG]
consensusID : consensus_8623#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 693 fasta sequence
[AGGGGGGACTTCAGGAGGGACGACTGTTCCTTCAAGAGGCCTGCTGAAAGCTCAGGTAACTTCCCTGTCATCCTCACATCGCTGTTTTTGCAATCTTAGTGACTGTCTACTTTTTGCAATCTTATGTTACTTCTGCTTGTATTCTTTACTAAAACCGAAGCTCACTTGAAGAATTTTGGTCCAAACGGCTGTGATACTCGTGCAAGCAAAGGGTCAATTGCCTCTGTTACATAATATGGAACACAGTACGCTTGTTAATGCCCTTTGCAGACAATCTCTTCATTTTGGATTCCTGCA-CT-AAGAAGTCGCTTGCTTCCTCCTGCAGAGTAGCATACATGGATTTTGCAGACAGTTA-ATGGTTCCTTGTCGAAAGCGT-TTGAGTTGAATTGATCTGACCTCGGTGAC-TTC-AACATTCGGTGATGACCTCTTCCCCCTATGCGATTCCAGGGAATTAC-AAAGGATTTCTTGTGGATGACGGGGCTGCCAGTCCGTTAT-AT-TCTGTTATCTATT-ACTTCCTCTGATAAAAGATATTTGATGTTTAGAACATTATTTGGTTAAAATTTT-GAAAATTCAAAAAAAAATGTTGTGACTGTGTTGGTGAATTTTGCATGCGGTATTTGGCGATTTTGCAACCTCTTGACTTATGCAAATCATTCTTATCCTATAACGCCTGGTGGTTTCCATGGCAAAAAA]
[-] EMBL CA761780 [AGGGGGGACTTCAGGAGGGACGACTGTTCCTTCAAGAGGCCTGCTGAAAGCTCAGGTAACTTCCCTGTCATCCTCACATCGCTGTTTTTGCAATCTTAGTGACTGTCTACTTTTTGCAATCTTATGTTACTTCTGCTTGTATTCTTTACTAAAACCGAAGCTCACTTGAAGAATTTTGGTCCAAACGGCTGTGATACTCGTGCAAGCAAAGGGTCAATTGCCTCTGTTACATAATATGGAACACAGTACGCTTGTTAATGCCCTTTGCAGACAATCTCTTCATTTTGGATTCCTGCA CT AAGAAGTCGCTTGCTTCCTCCTGCAGAGTAGCATACATGGATTTTGCAGACAGTTA ATGGTTCCTTGTCGAAAGCGT TTGAGTTGAATTGATCTGACCTCGGTGAC TTC AACATTCGGTGATGACCTCTTCCCCCTATGCGATTCCAGGGAATTAC AAAGGATTTCTTGTGGATGACGGGGCTGCCAGTCCGTTAT AT TCTGTTATCTATT ACTTCCTCTGATAAAAGATATTTGATGTTTAGAACATTATTTGGTTAAAATTTT GAAAATTCAAAAAAAAA ]
[+] EMBL BM421133 [ gtccgcgTGCAGCTGAAGAAGTCGCTTGCTTCCTCCTGCATAGTAGCATACATGGATTTNGCAGACAGTTAGATGGTTCCTTGTCGAAAGCGTNTTGAGTTGAATTGATCTGACCTCGGTGACGTTCGAACATTCGGTGATGACCTCTTCCCCCTATGCGATTCCAGTGAATTACNNAAGGATTTCTTGTGGATGACGGGGCTGCCAGTCCGTTATGATGTCTGTTATCTATTGACTCCCTCTGATAAAAGATATTTGATGTTTAGAACATTATTTGGTTAAAATTTTGGAAAATTCATTCCATCTTGTTGTGACTGTGTTGGTGAATTTTGCATGCGGTATTTGGCGATTTTGCAACCTCTTGACTTATGCAAATCATTCTTATCCTATAACGCCTGGTGGTTTCCATGGCAAAAAA]
consensusID : consensus_8623#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 575 fasta sequence
[ATGACAAGCGGCCTTGTCCTCCCATCTGTCAGATTTCTCTCCCTTCAGTCATGTGCCATATCAGGGAGTTGGCTAACGGAAATGCTTTCGCATGTGCGGTCTCTCAAGACTTTGAAATTACATGACTGCCCACAAATAAAATTTCTATCCTTCAGTGAACCTGCAGCAATGGAAGGTGCCAGCAGTTTGGGTTCAGCAGCAACGCACTCTGATAGGGATGAACAGCTGTTGAAAATTCCATCTAATATCATCCATTCTCTAAGAGATCTATTTATTTCTAACTGCCCTGATCTAGAGTTCGGAGGAGAAGAGGGAGCCCTCCGAGGATACACCTCTCTTGAATCCATTAAAGTTCAGAGTTGCCCCAAACTGATACCATTGTTGGTGAGTGGTAAGATGGAGGGTTGGATCGCTGCCACCATCTCTACGAAGCTTAGATATTGATATGGATCCTGAGCTGTCTACTGTATGGGATCTCAAACTGCAGGAGCTTGAACAGGGTGTTAATCAGGTTCCACCGCCACCTCCATCACTTGATACACTCTGTATCACGAATCTCACAGTTACAGTCCCGT]
[+] EMBL CF305747 [ATGACAAGCGGCCTTGTCCTCCCATCTGTCAGATTTCTCTCCCTTCAGTCATGTGCCATATCAGGGAGTTGGCTAACGGAAATGCTTTCGCATGTGCGGTCTCTCAAGACTTTGAAATTACATGACTGCCCACAAATAAAATTTCTATCCTTCAGTGAACCTGCAGCAATGGAAGGTGCCAGCAGTTTGGGTTCAGCAGCAACGCACTCTGATAGGGATGAACAGCTGTTGAAAATTCCATCTAATATCATCCATTCTCTAAGAGATCTATTTATTTCTAACTGCCCTGATCTAGAGTTCGGAGGAGAAGAGGGAGCCCTCCGAGGATACACCTCTCTTGAATCCATTAAAGTTCAGAGTTGCCCCAAACTGATACCATTGTTGGTGAGTGGTAAGATGGAGGGTTGGATCGCTGCCACCATCTCTACGAAGCTTAGATATTGATATGGATCCTGAGCTGTCTACTGTATGGGATCTCAAACTGCAGGAGCTTGAACAGGGTGTTAATCAGGTTCCACCGCCACCTCCATCACTTGATACACTCTGTATCACGAATCTCACAGTTACAGTCCCGT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8623#0 TACGCTACAGCTGGGATACTCCAAGGCACTGAGACAGTTGGAAATTGTAGACTGCAAGTT 60
consensus_8623#2 ------------------------------------------------------------
consensus_8623#1 ------------------------------------------------------------
consensus_8623#3 ------------------------------------------------------------
consensus_8623#0 ACTTGCTTCAGTCGAGGGCTTTGGATCCTTGACAG--ACCTTCTGTTATTGACAGTACAC 118
consensus_8623#2 ------------------------------------------------------------
consensus_8623#1 ---------TGTCTACCGTGTGGGATCTCAAACTGCAGGAGCTTGAACAGGGCAGTAATC 51
consensus_8623#3 ------------------------------------------------------------
consensus_8623#0 AACTCACCCAATTTACCTCAGTGTTTCAAGCTTCTTTCACAGCAGCGAGGGGCCTCTACG 178
consensus_8623#2 ------------------------------------------------------------
consensus_8623#1 AGGTTCCACCGCCACCTCCGTCACTTGACACATTCCTTATCAC------GAATCTCACAG 105
consensus_8623#3 ------------------------------------------------------------
consensus_8623#0 ATCTTGTCCCGACTGAAGAGCATTCCTTGTAATCTTGCCACTGCAACTTTCCTGATGGAC 238
consensus_8623#2 ---------------------------------------AGGGGGGACTTCAGGAGGGAC 21
consensus_8623#1 ACAAGGTACAGTCTCGTCTGCTGTCCTTCCT-CCCTACCATCACAAATTTAGTCATATCA 164
consensus_8623#3 ------------ATGACAAGCGGCCTTGTCCTCCCATCTGTCAGATTTCTCTCCCTTCAG 48
*
consensus_8623#0 G---GATCGTGAC--ACAGCGTCACCGGCCGTCTCACCACCAGTTCCTACGACTTCGCAC 293
consensus_8623#2 GACTGTTCCTTCA--AGAGGCCTGCTGAAAGCTCAGGTAACTTCCCTGTCATCCTCACAT 79
consensus_8623#1 GAAAGTCCAGAGTTGACATCTCTGCAGCTGGGATACTCCAAGGCACTGAAAGAGTTGGAA 224
consensus_8623#3 TCATGTGCCATATCAGGGAGTTGGCTAACGGAA-ATGCTTTCGCATGTGCGGTCTCTCAA 107
* * * * * *
consensus_8623#0 TGTTTGATCTGGGGCATACAAGACAAAAGTCATTGTTTTCATTCTTGTGCATCTCCTGGT 353
consensus_8623#2 CGCT--GTTTTTGCAATCTTAGTGACTGTCTACTTTTTGCAATCTTATGTTACTTCTGCT 137
consensus_8623#1 ATTGTAGACTGCAAGTCACTTGCTTCAGTTGAGGGCTTTGGATCCTTGACAAACCTTAGG 284
consensus_8623#3 GACTTTGAAATTACATGACTGCCCACAAATAAA-ATTTCTATCCTTCAGTGAACCTGCAG 166
* ** * *
consensus_8623#0 TGGTGCCTCGTGTTTGACGTGCTGTCGATGGCCCGAACACTTTAACTCCCAACATTGTAT 413
consensus_8623#2 TG-TATTCTTTACTAAA---ACCGAAGCTCACTTGAAGAATTTTGGTCCAAACG------ 187
consensus_8623#1 TTCTTGACAGTATATGAATCGCCCAGCATGCCTCAATGTTTTGAGATTCTATCA------ 338
consensus_8623#3 CAATGGAAGGTGCCAG------CAGTTTGGGTTCAGCAGCAACGCACTCTGATA------ 214
* * *
consensus_8623#0 GTCCTGATGTGGTTGTCTTTTTAAGGTCTTCCTAAATGCATTGCTCAGGACTTCAGGAGG 473
consensus_8623#2 GCTGTGATACTCGTGCAAGCAAAGGGTC-----AATTGCCTCTGTTACATAATATGGAAC 242
consensus_8623#1 -CAACAACATGGG-GCCTCTGAGATCTTGTCCCGACTGGAAAATCTTCAGATCAGTGATG 396
consensus_8623#3 -----GGGATGAACAGCTGTTGAAAATT---CCATCT--AATATCATCCATTCTCTAAGA 264
* * *
consensus_8623#0 GACGACTGTTCCTTCAAGAGGCCTGCTGA-AAGCTCAGAATTTTGGTCCAAACGGCTGTG 532
consensus_8623#2 ACAGTACGCTTGTTAATGCCCTTTGCAGACAATCTCTTCATTTTGG-------------- 288
consensus_8623#1 GCTTTATCCTTACTGTTTCCCTCTGCAAA-CAGCTCACGTCTCTGAGAGATCTATTCTTC 455
consensus_8623#3 GATCTATTTATTTCTAACTGCCCTGATCTAGAGTTCGGAGGAGAAGAGGGAGC------- 317
** * **
consensus_8623#0 ATACTCGTGCAAGCAAAGGGTCAATTGCCTCTGTTACATAATATGGAACACAAGTAGCAT 592
consensus_8623#2 --ATTCCTGCAC-TAAGAAGTCGCTTGCTTCC-TCCTGCAG-----------AGTAGCAT 333
consensus_8623#1 TGGCCTGAACGA--AGCAAGCCTGATGCGACGATGATG-GGTCTGACAGAGGAACAAGAG 512
consensus_8623#3 --CCTCCGAGGA--TACACCTCTCTTGAATCCATTA----------------AAGTTCAG 357
* ** * * * *
consensus_8623#0 ACATGGATTTTGCAGACAGNTAATGGTTCCTTGTCGAAAGCGNTTGAGTTGAATTGATCT 652
consensus_8623#2 ACATGGATTTTGCAGACAGTTAATGGTTCCTTGTCGAAAGCGTTTGAGTTGAATTGATCT 393
consensus_8623#1 AGA-GCACTCCAGCTTCTGACATCCCTCGAACGTCTCAACTTTTGGGGGTTGCCGAATCT 571
consensus_8623#3 AGTTGC-CCCAAACTGATACCATTGTTGGTGAGTGGTAAGATGGAGGGTTGGATCGCTGC 416
* * * * ** ** * * * *
consensus_8623#0 GACCTCGGTGACTTCAACATTCGGTGATGACCTCTTTCCCCTATGCGATTNCAG---GGA 709
consensus_8623#2 GACCTCGGTGACTTCAACATTCGGTGATGACCTCTTCCCCCTATGCGATTCCAG---GGA 450
consensus_8623#1 CTTGTCCCTTCCTGCAA-ATCTAGCAA-GCCTGACCTCCCTCGAGTGGTTA------GAT 623
consensus_8623#3 CA---CCATCTCTACGAAGCTTAGATATTGATATGGATCCTGAGCTGTCTACTGTATGGG 473
* * ** * * * * ** * * *
consensus_8623#0 ATTACAAAGGATTTTCTTGNGGATGACGGGGCTGNCAGTCCGGTATATTCTGGTATCTAT 769
consensus_8623#2 ATTACAAAGGATTT-CTTGTGGATGACGGGGCTGCCAGTCCGTTATATTCTGTTATCTAT 509
consensus_8623#1 ATCTCAGA----CTGCCCCCGCATGGCAAGGCTGCCAG------AGAT----GGGCCTTC 669
consensus_8623#3 ATCTCAAA----CTGCAGGAGCTTGAACAGGGTGTTAATC----AGGTTCCACCGCCACC 525
** ** * * * * ** ** ** * * * *
consensus_8623#0 TACTTCCTCTGANAAAN-ANATTTGATGGTTANAACATTATTTGGNTNAAANTTTGNAAA 828
consensus_8623#2 TACTTCCTCTGATAAAAGATATTTGATGTTTAGAACATTATTTGGTTAAAATTTTGAAAA 569
consensus_8623#1 CACCATCGTTGAGGAGATTATCTTTATG-CCGTTGCAGCGACGACCTAAG---------- 718
consensus_8623#3 TCCATCACTTGATACACTCTGTATCACGAATCTCACAGTTACAGTCCCGT---------- 575
* *** * * * **
consensus_8623#0 ------------------------------------------------------------
consensus_8623#2 TTCAAAAAAAAATGTTGTGACTGTGTTGGTGAATTTTGCATGCGGTATTTGGCGATTTTG 629
consensus_8623#1 ------------------------------------------------------------
consensus_8623#3 ------------------------------------------------------------
consensus_8623#0 ------------------------------------------------------------
consensus_8623#2 CAACCTCTTGACTTATGCAAATCATTCTTATCCTATAACGCCTGGTGGTTTCCATGGCAA 689
consensus_8623#1 ------------------------------------------------------------
consensus_8623#3 ------------------------------------------------------------
consensus_8623#0 ----
consensus_8623#2 AAAA 693
consensus_8623#1 ----
consensus_8623#3 ----
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||