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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8627#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1020 fasta sequence
[TTAGTAGGAGTCGTCCAGCAACACCAGAGGCACTCCGAAGCTTCACCAAAATGACCAAAATGTGTGTCGCAGTCAGGGTACATGACATCCATCGCCGAGGTACACATAACGCCCGGTTGGCCTCTTCCAACATGGTGTCTACTCGAAACAAGCTCTAACATCATTCACTGGGTCCAAATAAAAGGGGGAGCCAGTGACCGGTGTTTTCGTAGGGTTTGGATCGGCGACCGAGATAAAAGTACAATCGCGGATAAATGGAGAACATAGGTCCAAATGAACATCCAGCACCACCACT-AAAAAAAAAAGTAAGCTAGTGCGATGTTCGCATAAGGTTTTCCTGCTTAATTTTCTCCAAGCTCACATAGTGACTGGGGGTCCCAGCTTAGCCACCANATTATATTGCCATTTTCATTTCAATCTTCTGGTGAGGATCATAACCGACCAGCTTGAAGTCTGATGCCACGAAAGAATCTATATCCTTCTTCAAAGGGTTAATCTTCAAAATTGGAAATGGTTTAGGTAGCTTCTGGATTTGCTCCTCCAGAGCTCGCACATGTGTTCTATAGACATGGGCATCACCAATAACATGGACAAACTCTCCAGGAGAAAGACCGCAAACATGAGCAATCATGTATGTCAGAAGAGAATATGATGCAATGTTGAATGGAACACCAAGTCCCATATCAGCAGAGCGTTGATACATCTGGCACGATAGCTCCCCGCTCTCAACATAAAATTGTGCAAACATGTGGCAAGGAGGAAGGGCCATCTTCTTGAGATCTGAAGGATTCCACGCAGATAGGATAATTCGCCTATCGTCAGGATTATTCTTGATCTTGTCAATCACATCCATTAGCTGATCAAAGCCTTTACCAGTATAGTCAGCATGCATGTCGGTATATTCAGCACCAAAGTGTCGCCATTGAAATCCATAAACTGGACCTAGATCACCTTCTTCCCTATGTGCTAAGCCAACACTGTCAAGATACTCTCTCGAAGCATTGCCATCCCAAATATGAA]
[+] EMBL CA759693 [TTAGTAGGAGTCGTCCAGCAACACCAGAGGCACTCCGAAGCTTCACCAAAATGACCAAAATGTGTGTCGCAGTCAGGGTACATGACATCCATCGCCGAGGTACACATAACGCCCGGTTGGCCTCTTCCAACATGGTGTCTACTCGAAACAAGCTCTAACATCATTCACTGGGTCCAAATAAAAGGGGGAGCCAGTGACCGGTGTTTTCGTAGGGTTTGGATCGGCGACCGAGATAAAAGTACAATCGCGGATAAATGGAGAACATAGGTCCAAATGAACATCCAGCACCACCACT AAAAAAAAAAGTAAGCTAGTGCGATGTTCGCATAAGGTTTTCCTGCTTAATTTTCTCCAAGCTCACATAGTGACTGGGGGTCCCAGCTTAGCCACCANATTATATTGCCATTTTCATTTCAATCTTCTGGTGAGGATCATAACCGACCAGCTTGAAGTCTGATGCC ]
[+] EMBL CB631384 [ AGATAAACGTACAATCGCGGATAAATGGAGAACATAGGTCCAAATGAACATCCAGCACCACCACTAAAAAAAAAAAGTAAGCTAGTGCGATGTTCGCATAAGGTTTTCCTGCTTAATTTTCTCCAAGCTCACATAGTGACTGGGGGTCCCAGCTTAGCCACCAAATTATATTGCCATTTTCATTTCAATCTTCTGGTGAGGATCATAACCGACCAGCTTGAAGTCTGATGCCACGAAAGAATCTATATCCTTCTTCAAAGGGTTAATCTTCAAAATTGGAAATGGTTTAGGTAGCTTCTGGATTTGCTCCTCCAGAGCTCGCACATGTGTTCTATAGACATGGGCATCACCAATAACATGGACAAACTCTCCAGGAGAAAGACCGCAAACATGAGCAATCATGTATGTCAGAAGAGAATATGATGCAATGTTGAATGGAACACCAAGTCCCATATCAGCAGAGCGTTGATACATCTGGCACGATAGCTCCCCGCTCTCAACATAAAATTGTGCAAACATGTGGCAAGGAGGAAGGGCCATCTTCTTGAGATCTGAAGGATTCCACGCAGATAGGATAATTCGCCTATCGTCAGGATTATTCTTGATCTTGTCAATCACATCCATTAGCTGATCAAAGCCTTTACCAGTATAGTCAGCATGCATGTCGGTATATTCAGCACCAAAGTGTCGCCATTGAAATCCATAAACTGGACCTAGATCACCTTCTTCCCTATGTGCTAAGCCAACACTGTCAAGATACTCTCTCGAAGCATTGCCATCCCAAATATGAA]
consensusID : consensus_8627#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 557 fasta sequence
[TTTTTTTTTTTTTTCCAGCAACACCAGAGGCACTCCGAAGCTTCACCAAAATGACCAAAATGTGTGTCGCAGTCAGGGTACATGACATCCATCGCCGAGGTACACATAACGCCCGGTTGGCTCTTCCAACATGGTGTCTACTCGAAACAAGCTCTAACATCATTCACTGGGTCCAAATAAAAGGGGGAGCCAGTGACCGGTGTTTTCGTAGGGTTTGGATCGGCGACCGAGATAAAAGTACAATCGCGGATAAATGGAGAACATAGGTCCAAATGAACATCCAGCACCACCACTAAAAAAAACAAAGTAAGCTAGTGCGATGTTCGCATAAGGTTTTCCTGCTTAATTTTCTCCAAGCTCACATAGTGACTGGGGGTCCCAGCTTAGCCACCAAATTATATTGCCATTTTCATTTCAATCTTCTGGTGAGGATCATAACCGACAGTTGAAGTCTGATGCCAGAAAGAATCTATATCCTTCTTCAAAGGGTTCAATCTTCACCAATTGGACACGTGGTTCTAGGTAAGCTTCTGGATTGCTCCTCCGAAGGNCGGCGT]
[-] EMBL BM038723 [TTTTTTTTTTTTTTCCAGCAACACCAGAGGCACTCCGAAGCTTCACCAAAATGACCAAAATGTGTGTCGCAGTCAGGGTACATGACATCCATCGCCGAGGTACACATAACGCCCGGTTGGCTCTTCCAACATGGTGTCTACTCGAAACAAGCTCTAACATCATTCACTGGGTCCAAATAAAAGGGGGAGCCAGTGACCGGTGTTTTCGTAGGGTTTGGATCGGCGACCGAGATAAAAGTACAATCGCGGATAAATGGAGAACATAGGTCCAAATGAACATCCAGCACCACCACTAAAAAAAACAAAGTAAGCTAGTGCGATGTTCGCATAAGGTTTTCCTGCTTAATTTTCTCCAAGCTCACATAGTGACTGGGGGTCCCAGCTTAGCCACCAAATTATATTGCCATTTTCATTTCAATCTTCTGGTGAGGATCATAACCGACAGTTGAAGTCTGATGCCAGAAAGAATCTATATCCTTCTTCAAAGGGTTCAATCTTCACCAATTGGACACGTGGTTCTAGGTAAGCTTCTGGATTGCTCCTCCGAAGGNCGGCGT]
consensusID : consensus_8627#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 423 fasta sequence
[CGTCAGGGATATTCTTGGATCTTGTCAATCAACATCCATTAGCTGATCAAAGCCTTTACCAGTATAGTCAGCATGCATGTCGGNATATTTCAGGCACCAAAAGTGTCGCCATGGAANTCCATAAACTGGACCTAGGATCACCTCTTCCNATGTGCTAAGCCAACACTGTCAGGTACTCTCTCGAAGCATTGCCATCCCAAATATGAATGCCTTTCTCTTGTAAAACCTTTGCACTTGTCGAGCCACTGATGAACCACAGGAGTTCTTCAACAACACCCCTCCAAAATACCTTCTTTGTTGTCAACAATGGGAAGCTATTCCTTAAGTTGAACCGCATCTGACAACCAAATTTCGATAATGTCCCTGTTCCTGTTCTGTCATTTTTCTGAGCACCACTCCTTATAATATCTTCAACAAGATTGA]
[-] EMBL AU031025 [CGTCAGGGATATTCTTGGATCTTGTCAATCAACATCCATTAGCTGATCAAAGCCTTTACCAGTATAGTCAGCATGCATGTCGGNATATTTCAGGCACCAAAAGTGTCGCCATGGAANTCCATAAACTGGACCTAGGATCACCTCTTCCNATGTGCTAAGCCAACACTGTCAGGTACTCTCTCGAAGCATTGCCATCCCAAATATGAATGCCTTTCTCTTGTAAAACCTTTGCACTTGTCGAGCCACTGATGAACCACAGGAGTTCTTCAACAACACCCCTCCAAAATACCTTCTTTGTTGTCAACAATGGGAAGCTATTCCTTAAGTTGAACCGCATCTGACAACCAAATTTCGATAATGTCCCTGTTCCTGTTCTGTCATTTTTCTGAGCACCACTCCTTATAATATCTTCAACAAGATTGA]
consensusID : consensus_8627#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 373 fasta sequence
[TTTTTTTTTTTTTTTTTTTCANCACCAAAATNACCAAAATGTGTGTCGCAGTCAGGGTACATGACATCCATCGCCGAGCTACACATAACGCCCGGTTGGCCTCTTCCAACATGGTGTCAACTCGAAACAAGCTCTAACATCATTCACTGGGTCCAAATAAAAGGGGGAGCCAGTGACCGGTGTTTTCGTAGGGTTTAGATCGGCGACCGAGATAAAAGTACAATCGCGGATAAATGGAGAACATAGGTCCAAATGAACATCCAGCACCACCACTAAAAAAAAAAAAAGTAAGCTAGTGCGATGTTCGCATAAGGTTTTCCTACTTAAGTTTCTCCAAGCTCACATAGTGACTGGGGGTCCCAGCTTAGCCACC]
[-] EMBL AU095198 [TTTTTTTTTTTTTTTTTTTCANCACCAAAATNACCAAAATGTGTGTCGCAGTCAGGGTACATGACATCCATCGCCGAGCTACACATAACGCCCGGTTGGCCTCTTCCAACATGGTGTCAACTCGAAACAAGCTCTAACATCATTCACTGGGTCCAAATAAAAGGGGGAGCCAGTGACCGGTGTTTTCGTAGGGTTTAGATCGGCGACCGAGATAAAAGTACAATCGCGGATAAATGGAGAACATAGGTCCAAATGAACATCCAGCACCACCACTAAAAAAAAAAAAAGTAAGCTAGTGCGATGTTCGCATAAGGTTTTCCTACTTAAGTTTCTCCAAGCTCACATAGTGACTGGGGGTCCCAGCTTAGCCACC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8627#1 -----------TTTTTTTTTTTTTTCCAGCAACACCAG--AGGCACTCCGAAGCTTCACC 47
consensus_8627#3 -----------TTTTTTTTTTTTTTTT------------------TTTCAN-----CACC 26
consensus_8627#0 -----------TTAGTAGGAGTCGTCCAGCAACACCAG--AGGCACTCCGAAGCTTCACC 47
consensus_8627#2 CGTCAGGGATATTCTTGGATCTTGTCAATCAACATCCATTAGCTGATCAAAGCCTTTACC 60
** * * * * ***
consensus_8627#1 AAAATGACCAAAATGTGTGTCGCAGT----CAGGGTACATGACATCCATCGCCGAGGTAC 103
consensus_8627#3 AAAATNACCAAAATGTGTGTCGCAGT----CAGGGTACATGACATCCATCGCCGAGCTAC 82
consensus_8627#0 AAAATGACCAAAATGTGTGTCGCAGT----CAGGGTACATGACATCCATCGCCGAGGTAC 103
consensus_8627#2 AGTATAGTCAGCATGCATGTCGGNATATTTCAGGCACCAAAAGTGTCGCCATGGAANTCC 120
* ** ** *** ***** * **** ** * * * ** * *
consensus_8627#1 ACATAACG---CCCGGTTGGC-TCTTCCAACATGGT--GTCTACTCGAAACAAGCTCTAA 157
consensus_8627#3 ACATAACG---CCCGGTTGGCCTCTTCCAACATGGT--GTCAACTCGAAACAAGCTCTAA 137
consensus_8627#0 ACATAACG---CCCGGTTGGCCTCTTCCAACATGGT--GTCTACTCGAAACAAGCTCTAA 158
consensus_8627#2 ATAAACTGGACCTAGGATCACCTCTTCCNATGTGCTAAGCCAACACTGT-CAGGTACTCT 179
* * * * * ** * * ****** * ** * * * ** * ** * **
consensus_8627#1 CATCATTCACTGGGTCCAAATAAAAGGGGGAGCCAGTGACCGGTGTTTTCGTAGGGTTTG 217
consensus_8627#3 CATCATTCACTGGGTCCAAATAAAAGGGGGAGCCAGTGACCGGTGTTTTCGTAGGGTTTA 197
consensus_8627#0 CATCATTCACTGGGTCCAAATAAAAGGGGGAGCCAGTGACCGGTGTTTTCGTAGGGTTTG 218
consensus_8627#2 CTCGAAGCATTGCCATCC--CAAATATGAATGCCTTTCTCTTGTAAAACCTTTGCACTT- 236
* * ** ** * *** * *** * * ** * * * **
consensus_8627#1 GATCGGCGACCGAGATAAAAGTACAATCGCGGATAAATGGAGAACATAGGTCCAAATGAA 277
consensus_8627#3 GATCGGCGACCGAGATAAAAGTACAATCGCGGATAAATGGAGAACATAGGTCCAAATGAA 257
consensus_8627#0 GATCGGCGACCGAGATAAAAGTACAATCGCGGATAAATGGAGAACATAGGTCCAAATGAA 278
consensus_8627#2 GTCGAGCCACTGATG---AACCACAG----GAGTTCTTCAACAACACCCCTCCAAAATAC 289
* ** ** ** ** *** * * * * **** ****** *
consensus_8627#1 CATCC--AGCACCACCACTAAAAAAAACAAA-GTAAGCTAGTGCGATGTTCGCA-TAAGG 333
consensus_8627#3 CATCC--AGCACCACCACTAAAAAAAAAAAAAGTAAGCTAGTGCGATGTTCGCA-TAAGG 314
consensus_8627#0 CATCC--AGCACCACCACTAAAAAAAAAA---GTAAGCTAGTGCGATGTTCGCA-TAAGG 332
consensus_8627#2 CTTCTTTGTTGTCAACAATGGGAAGCTATTCCTTAAGTTGAACCGCATCTGACAACCAAA 349
* ** ** ** * ** **** * ** * ** *
consensus_8627#1 TTTTCCTGCTTAATTTTCTCCAAGCTCACATAGTGACTGGGGGTCCCAGCTTAGCCACCA 393
consensus_8627#3 TTTTCCTACTTAAGTTTCTCCAAGCTCACATAGTGACTGGGGGTCCCAGCTTAGCCACC- 373
consensus_8627#0 TTTTCCTGCTTAATTTTCTCCAAGCTCACATAGTGACTGGGGGTCCCAGCTTAGCCACCA 392
consensus_8627#2 TTTCGATAATGTCCCTGTTCCTGTTCTGTCATTTTTCTGAGCACCACTCCTTATAATATC 409
*** * * * *** * *** * * * ****
consensus_8627#1 AATTATATTGCCATTTTCATTTCAATCTTCTGGTGAGGATCATAACCGACAG--TTGAAG 451
consensus_8627#3 ------------------------------------------------------------
consensus_8627#0 NATTATATTGCCATTTTCATTTCAATCTTCTGGTGAGGATCATAACCGACCAGCTTGAAG 452
consensus_8627#2 TTCAACAAGATTGA---------------------------------------------- 423
consensus_8627#1 TCTGATGCCA-GAAAGAATCTATATCCTTCTTCAAAGGGTTCAATCTTCACCAATTGGAC 510
consensus_8627#3 ------------------------------------------------------------
consensus_8627#0 TCTGATGCCACGAAAGAATCTATATCCTTCTTCAAAGGGTT-AATCTTCAA-AATTGGAA 510
consensus_8627#2 ------------------------------------------------------------
consensus_8627#1 ACGTGGTTCTAGGTAAGCTTCTGGATTGCTCCTCCGAAGGNCGGCGT------------- 557
consensus_8627#3 ------------------------------------------------------------
consensus_8627#0 ATGG---TTTAGGTAGCTTCTGGATTTGCTCCTCCAGAGCTCGCACATGTGTTCTATAGA 567
consensus_8627#2 ------------------------------------------------------------
consensus_8627#1 ------------------------------------------------------------
consensus_8627#3 ------------------------------------------------------------
consensus_8627#0 CATGGGCATCACCAATAACATGGACAAACTCTCCAGGAGAAAGACCGCAAACATGAGCAA 627
consensus_8627#2 ------------------------------------------------------------
consensus_8627#1 ------------------------------------------------------------
consensus_8627#3 ------------------------------------------------------------
consensus_8627#0 TCATGTATGTCAGAAGAGAATATGATGCAATGTTGAATGGAACACCAAGTCCCATATCAG 687
consensus_8627#2 ------------------------------------------------------------
consensus_8627#1 ------------------------------------------------------------
consensus_8627#3 ------------------------------------------------------------
consensus_8627#0 CAGAGCGTTGATACATCTGGCACGATAGCTCCCCGCTCTCAACATAAAATTGTGCAAACA 747
consensus_8627#2 ------------------------------------------------------------
consensus_8627#1 ------------------------------------------------------------
consensus_8627#3 ------------------------------------------------------------
consensus_8627#0 TGTGGCAAGGAGGAAGGGCCATCTTCTTGAGATCTGAAGGATTCCACGCAGATAGGATAA 807
consensus_8627#2 ------------------------------------------------------------
consensus_8627#1 ------------------------------------------------------------
consensus_8627#3 ------------------------------------------------------------
consensus_8627#0 TTCGCCTATCGTCAGGATTATTCTTGATCTTGTCAATCACATCCATTAGCTGATCAAAGC 867
consensus_8627#2 ------------------------------------------------------------
consensus_8627#1 ------------------------------------------------------------
consensus_8627#3 ------------------------------------------------------------
consensus_8627#0 CTTTACCAGTATAGTCAGCATGCATGTCGGTATATTCAGCACCAAAGTGTCGCCATTGAA 927
consensus_8627#2 ------------------------------------------------------------
consensus_8627#1 ------------------------------------------------------------
consensus_8627#3 ------------------------------------------------------------
consensus_8627#0 ATCCATAAACTGGACCTAGATCACCTTCTTCCCTATGTGCTAAGCCAACACTGTCAAGAT 987
consensus_8627#2 ------------------------------------------------------------
consensus_8627#1 ---------------------------------
consensus_8627#3 ---------------------------------
consensus_8627#0 ACTCTCTCGAAGCATTGCCATCCCAAATATGAA 1020
consensus_8627#2 ---------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||