cluster # 863

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 863 cluster # 863 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_863#0 length = 704 sequences # 1

consensus_863#1 length = 173 sequences # 1

consensusID : consensus_863#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 704
fasta sequence

                              [AAAATTATTACTTTTTTTTTAAAAACAAAGGCCATTGAAATGGTACATAACCAAACTGTAAAATAAAAATATATACCATATTATATATTGATATATCATCAACATACCCCAAAACAAAGCTGCATACTATTATTATAGGCAGCAATCCACCAGCGCAAAGCTTGATCTTAGCTTATTTGCCACCAAACTCCTCCCAACCTGGGGGCTTTTTGGCAAAAAAGCTAATCAACTGCACCTGCCTGACTTTTTCAAAACCGATAATACGGACAAAGGCTTCGGGGTTGGGCTTCTTGGCCTCCCCCAACTCCTTGAACCCCTGGGTGGCCTCCGTGCACCCGAAAATGGGGCACTTCCCCATGGTCCAAATACNTGCCNCCTTTTTACCCNGGNAAACNTTTGTTCCCCNGGNTAAAAAAACCNCCCTTGTTAAACCNAGGGAGGGCCCCCTTGGTTTTAAAACCNTTCCCAAATNCCNGNCNCCCGGGGGNTCCTTNTTTTNTAAAACGCCCCCCCCCGGGGGAACCCCCCCTTTNTTCCCTTTNTTAAGGGTTATTCAACCTNGGTTTNCNGGGCNANCTTTCCCTTTTTAAATTTTCCCCCCCCANCCCCCNAANAAACCGAAAAAAATTTTACCNGGNCCAAAATAANCCCCTTTGNTTCCCCCCCCCCCCCGAAACTTTCCCCNTTTAAACCCCCCGGGAANG]

[+] EMBL BE229275             [AAAATTATTACTTTTTTTTTAAAAACAAAGGCCATTGAAATGGTACATAACCAAACTGTAAAATAAAAATATATACCATATTATATATTGATATATCATCAACATACCCCAAAACAAAGCTGCATACTATTATTATAGGCAGCAATCCACCAGCGCAAAGCTTGATCTTAGCTTATTTGCCACCAAACTCCTCCCAACCTGGGGGCTTTTTGGCAAAAAAGCTAATCAACTGCACCTGCCTGACTTTTTCAAAACCGATAATACGGACAAAGGCTTCGGGGTTGGGCTTCTTGGCCTCCCCCAACTCCTTGAACCCCTGGGTGGCCTCCGTGCACCCGAAAATGGGGCACTTCCCCATGGTCCAAATACNTGCCNCCTTTTTACCCNGGNAAACNTTTGTTCCCCNGGNTAAAAAAACCNCCCTTGTTAAACCNAGGGAGGGCCCCCTTGGTTTTAAAACCNTTCCCAAATNCCNGNCNCCCGGGGGNTCCTTNTTTTNTAAAACGCCCCCCCCCGGGGGAACCCCCCCTTTNTTCCCTTTNTTAAGGGTTATTCAACCTNGGTTTNCNGGGCNANCTTTCCCTTTTTAAATTTTCCCCCCCCANCCCCCNAANAAACCGAAAAAAATTTTACCNGGNCCAAAATAANCCCCTTTGNTTCCCCCCCCCCCCCGAAACTTTCCCCNTTTAAACCCCCCGGGAANG]




>consensus_863#0
AAAATTATTACTTTTTTTTTAAAAACAAAGGCCATTGAAATGGTACATAACCAAACTGTA
AAATAAAAATATATACCATATTATATATTGATATATCATCAACATACCCCAAAACAAAGC
TGCATACTATTATTATAGGCAGCAATCCACCAGCGCAAAGCTTGATCTTAGCTTATTTGC
CACCAAACTCCTCCCAACCTGGGGGCTTTTTGGCAAAAAAGCTAATCAACTGCACCTGCC
TGACTTTTTCAAAACCGATAATACGGACAAAGGCTTCGGGGTTGGGCTTCTTGGCCTCCC
CCAACTCCTTGAACCCCTGGGTGGCCTCCGTGCACCCGAAAATGGGGCACTTCCCCATGG
TCCAAATACNTGCCNCCTTTTTACCCNGGNAAACNTTTGTTCCCCNGGNTAAAAAAACCN
CCCTTGTTAAACCNAGGGAGGGCCCCCTTGGTTTTAAAACCNTTCCCAAATNCCNGNCNC
CCGGGGGNTCCTTNTTTTNTAAAACGCCCCCCCCCGGGGGAACCCCCCCTTTNTTCCCTT
TNTTAAGGGTTATTCAACCTNGGTTTNCNGGGCNANCTTTCCCTTTTTAAATTTTCCCCC
CCCANCCCCCNAANAAACCGAAAAAAATTTTACCNGGNCCAAAATAANCCCCTTTGNTTC
CCCCCCCCCCCCGAAACTTTCCCCNTTTAAACCCCCCGGGAANG

consensusID : consensus_863#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 173
fasta sequence

                              [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATCCTCACCCAACAATAATTGTAGTACTTTTACAATAAAACCGGCCGGAAAGGGAGGGAAAAAATTTTTACTTTTTTGTTAAAAACAAAGGCCATTGAAATGGTACATAACCAATACTCCTTCAATCCAT]

[+] EMBL CF299485             [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATCCTCACCCAACAATAATTGTAGTACTTTTACAATAAAACCGGCCGGAAAGGGAGGGAAAAAATTTTTACTTTTTTGTTAAAAACAAAGGCCATTGAAATGGTACATAACCAATACTCCTTCAATCCAT]




>consensus_863#1
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATCCTCACCCAACAATA
ATTGTAGTACTTTTACAATAAAACCGGCCGGAAAGGGAGGGAAAAAATTTTTACTTTTTT
GTTAAAAACAAAGGCCATTGAAATGGTACATAACCAATACTCCTTCAATCCAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_863#0      AAAATTATTACTTTTTTTTTAAAAACAAAGGCCATTGAAATGGTACATAACCAAACTGTA 60
consensus_863#1      ------------------------------------------------------------
                                                                                 

consensus_863#0      AAATAAAAATATATACCATATTATATATTGATATATCATCAACATACCCCAAAACAAAGC 120
consensus_863#1      ------------------------------------------------------------
                                                                                 

consensus_863#0      TGCATACTATTATTATAGGCAGCAATCCACCAGCGCAAAGCTTGATCTTAGCTTATTTGC 180
consensus_863#1      ------------------------------------------------------------
                                                                                 

consensus_863#0      CACCAAACTCCTCCCAACCTGGGGGCTTTTTGGCAAAAAAGCTAATCAACTGCACCTGCC 240
consensus_863#1      ------------------------------------------------------------
                                                                                 

consensus_863#0      TGACTTTTTCAAAACCGATAATACGGACAAAGGCTTCGGGGTTGGGCTTCTTGGCCTCCC 300
consensus_863#1      ------------------------------------------------------------
                                                                                 

consensus_863#0      CCAACTCCTTGAACCCCTGGGTGGCCTCCGTGCACCCGAAAATGGGGCACTTCCCCATGG 360
consensus_863#1      ------------------------------------------------------------
                                                                                 

consensus_863#0      TCCAAATACNTGCCNCCTTTTTACCCNGGNAAACNTTTGTTCCCCNGGNTAAAAAAACCN 420
consensus_863#1      ------------------------------------------------------------
                                                                                 

consensus_863#0      CCCTTGTTAAACCNAGGGAGGGCCCCCTTGGTTTTAAAACCNTTCCCAAATNCCNGNCNC 480
consensus_863#1      ------------------------------------------------------------
                                                                                 

consensus_863#0      CCGGGGGNTCCTTNTTTTNTAAAACGCCCCCCCCCGGGGGAACCCCCCCTTTNTTCCCTT 540
consensus_863#1      -----------------------------------------TTTTTTTTTTTTTTTTTTT 19
                                                                      *** **   **

consensus_863#0      TNTTAAGGGTTATTCAACCTNGGTTTNCNGGGCNANCTTTCCCTTTTTAAATTTTCCCCC 600
consensus_863#1      TTTTTTTTTTTTTTTTTTTTTTTTATCCTCACCCAACAATAATTGTAGTACTTTTACAAT 79
                     * **     ** **     *   * * *    * * *  *   * *   * **** *   

consensus_863#0      CCCANCCCCCNAANAA--ACCGAAAAAAATTTTACCNG---GNCCAAAATAANCCCCTTT 655
consensus_863#1      AAAACCGGCCGGAAAGGGAGGGAAAAAATTTTTACTTTTTTGTTAAAAACAAAGGCCATT 139
                        * *  **  * *   *  ******* ******      *   **** **   ** **

consensus_863#0      GNTTCCCCCCCCCCCCCGAAACTTTCCCCNTTTAAACCCCCCGGGAANG 704
consensus_863#1      GAAATGGTACATAACC-AATACTCCTTCAATCCAT-------------- 173
                     *        *    **  * ***    *  *  *