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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8630#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 875 fasta sequence
[TCAGTTTTCTCAATGACCAAACCACTAGAACTTCCAGTGATAATTTTCATATCATATCTTGTCCTCCTTGCGGCAGGAATACAAGAAGGTAGATATGTAAAGCATGAAGCAAGTTATGATCAACCTATTTCCGACAAGATTATCAACGAGATCATTGAGACTGGAGACGGCGACGTGTTTCATTGCATCGATATCAATCTACAACCAGCACTATCTCATCCGTTGTTGAAAGGGCACATAATACAGATGGAGCCCACCTCTTATCCATCAGAGCTGAAAATCAAATCATCATCAGACACTATAGCGACAGAAGCTCATCTGCCTACCATTGCATGCCCAAAGGGAACAATACCATTGTTACAAAATAGTAAAGCTGATCTGAAGACACAATTTAGTTTTGATCCAATCGGTAATACCCATCATCGTGGAGGGGAGAGAGCTGGGTGTACAACATATGATGAAATATATGGAACACAAGTTGCAATCAATGTCTATGAGCCAAAAGTGCGAGGACAAAATAATCTTAGTGCATCATGGGCATTAATGGTAAACGGACCTACTGGAAATTATGAGGGAATCGGTGCTGGTTCTATTGTATGGCCAAACTACCATGGTGACAACTTTGCGAGATTTCATATATACTGGCAAGNTAATACGGTGAACATGCCATGCTTTGATCATATGTGTCCTGGCTTTGTACAAGTCAGTAAGAGTGNTGGTATTGGTGGGAGAATTGAACCAGNTTCTACCTATAATGGGAGATCAGTATGAAANTACTGGTACTGNATCAAAGGGACCCGAANACAGGAAAATGGGNGGCTAGCATATNGGGCGNGATNAAAAANCACTTGGGATATTGGGCCTCCTTTNAATTT]
[+] EMBL CA767033 [TCAGTTTTCTCAATGACCAAACCACTAGAACTTCCAGTGATAATTTTCATATCATATCTTGTCCTCCTTGCGGCAGGAATACAAGAAGGTAGATATGTAAAGCATGAAGCAAGTTATGATCAACCTATTTCCGACAAGATTATCAACGAGATCATTGAGACTGGAGACGGCGACGTGTTTCATTGCATCGATATCAATCTACAACCAGCACTATCTCATCCGTTGTTGAAAGGGCACATAATACAGATGGAGCCCACCTCTTATCCATCAGAGCTGAAAATCAAATCATCATCAGACACTATAGCGACAGAAGCTCATCTGCCTACCATTGCATGCCCAAAGGGAACAATACCATTGTTACAAAATAGTAAAGCTGATCTGAAGACACAATTTAGTTTTGATCCAATCGGTAATACCCATCATCGTGGAGGGGAGAGAGCTGGGTGTACAACATATGATGAAATATATGGAACACAAGTTGCAATCAATGTCTATGAGCCAAAAGTGCGAGGACAAAATAATCTTAGTGCATCATGGGCATTAATGGTAAACGGACCTACTGGAAATTATGAGGGAATCGGTGCTGGTTCTATTGTATGGCCAAACTACCATGGTGACAACTTTGCGAGATTTCATATATACTGGCAAGNTAATACGGTGAACATGCCATGCTTTGATCATATGTGTCCTGGCTTTGTACAAGTCAGTAAGAGTGNTGGTATTGGTGGGAGAATTGAACCAGNTTCTACCTATAATGGGAGATCAGTATGAAANTACTGGTACTGNATCAAAGGGACCCGAANACAGGAAAATGGGNGGCTAGCATATNGGGCGNGATNAAAAANCACTTGGGATATTGGGCCTCCTTTNAATTT]
[+] EMBL AA752283 [ GAAATAATGAGGGAATCGGTGCTGGTTCTATTGTATGGCCAAACTACCATGGTGACAACTTTGCCAGATTTCATATATACTGGCAAGTTAATACGGTGAACATGCCATGCTTTTATCATATGTGTCCTGGATTTGTACAGGTCAGTACGAGTGTTTGTATT ]
consensusID : consensus_8630#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 691 fasta sequence
[GTGAACATGCCATGCTTTGATAATATGTGTCCGGGCCTTGTACAAGTCAGTAAGAGTGTTGGTATTGGTGGGAGAATTGAACCAGTTTCTACCTATAATGGAGATCAGTATGAAATTTCTGTTACTGTATCAAAGGACCCGAAGACAGGAAATTGGTGGCTAGCATATGGGCGTGATAAAAAACCCCTTGGATATTGGCCTCCTTCAATTTTCACCTACATGAATGAAAAAGCAAGTGCTTGTTTTTGGGGTGGGCAAGTCCATGGACCAACAGTTCAATTACACCTTCCAGAACTGGGCAGTGGACATTGGGCAGCCACTGGACCTGGGAAAGCTGCCTATGTGAGGAGTATCAAAGTCATCAACAAAGACAGCCAGTACTTCATTCCAGGCACACACAACACATTTTCAGGCAGTACTAGACCATTTTGCTATGATGCTGGAGATATCAGGTTCAACGATGATGGAGCCCGTCTCTTATATGGTGGACCTGGTAATTGCACAAAGTGATACATCTGTAGTGTACTAGCATGTTGTATCAAATAAATCAATGTTCGAGTTCAATGCCCATCGGTATTTTGGTAGATCTGAGTCCAACTAATATAATTAATATTTGACGCGATTGCTGGTTGTATTAGAAATGTTGTTTGCAACGATGAATCTGCTGCCACCTTTCGTTCAAAAAAAAAAA]
[-] EMBL CA763582 [GTGAACATGCCATGCTTTGATAATATGTGTCCGGGCCTTGTACAAGTCAGTAAGAGTGTTGGTATTGGTGGGAGAATTGAACCAGTTTCTACCTATAATGGAGATCAGTATGAAATTTCTGTTACTGTATCAAAGGACCCGAAGACAGGAAATTGGTGGCTAGCATATGGGCGTGATAAAAAACCCCTTGGATATTGGCCTCCTTCAATTTTCACCTACATGAATGAAAAAGCAAGTGCTTGTTTTTGGGGTGGGCAAGTCCATGGACCAACAGTTCAATTACACCTTCCAGAACTGGGCAGTGGACATTGGGCAGCCACTGGACCTGGGAAAGCTGCCTATGTGAGGAGTATCAAAGTCATCAACAAAGACAGCCAGTACTTCATTCCAGGCACACACAACACATTTTCAGGCAGTACTAGACCATTTTGCTATGATGCTGGAGATATCAGGTTCAACGATGATGGAGCCCGTCTCTTATATGGTGGACCTGGTAATTGCACAAAGTGATACATCTGTAGTGTACTAGCATGTTGTATCAAATAAATCAATGTTCGAGTTCAATGCCCATCGGTATTTTGGTAGATCTGAGTCCAACTAATATAATTAATATTTGACGCGATTGCTGGTTGTATTAGAAATGTTGTTTGCAACGATGAATCTGCTGCCACCTTTCGTTCAAAAAAAAAAA]
consensusID : consensus_8630#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 674 fasta sequence
[GGTTCTATGGTATGGCCAAACTACCATGGTGACAACTTTGCGAGATTTTATATATACTGGCAAGTTAATACGGTGAACATGCCATGCTTTGATCATATGTGTCCTGGCTTTGTACAAGTCAGTAAGAGTGTTGGTATTGGTGGGAGAATTGAACCAGTTTCTNCCTATAATGGAGATCAGTATGAAATTACTGTTACTATATCAAAGGACCCGAAGACAGGAAATTGGTGGCTAGCATATGGGCGTGATAAAAAACCACTTGGATATTGGCCTCCTTCAATTTTTACCTACATGAATGAAAAAGCAAGTGCTTGTTTTTGGGGTGGGCAAGTCCATGGACCAACAGTTCAATTACCCCTTCCAGAACTGGGCAGTGGACATTGGGCAGCCCCTGGACCTGGGAAAGCTGCCTATGTGAGGAGTATCAAAGTCATCAACAAAGACAGCCAGTACTTCATTCCAGGCACACACAACACATTTTCAGGCAGTACTAGACCATTTTGCTATGATGCCGGAGATATCAGGTTCAACGATGATGGAGCCCGTTTTTTATATGGTGGACCTGGTAATTGCCCAAAGTGATACATCTGTAGTGTACTAGCATGTTGTACCAAATAAATCAATGTTCGAGTTCAATGCCCATCGGTATTTTGGTAAAAAAAAAAAAAAAAAAA]
[-] EMBL CA761976 [GGTTCTATGGTATGGCCAAACTACCATGGTGACAACTTTGCGAGATTTTATATATACTGGCAAGTTAATACGGTGAACATGCCATGCTTTGATCATATGTGTCCTGGCTTTGTACAAGTCAGTAAGAGTGTTGGTATTGGTGGGAGAATTGAACCAGTTTCTNCCTATAATGGAGATCAGTATGAAATTACTGTTACTATATCAAAGGACCCGAAGACAGGAAATTGGTGGCTAGCATATGGGCGTGATAAAAAACCACTTGGATATTGGCCTCCTTCAATTTTTACCTACATGAATGAAAAAGCAAGTGCTTGTTTTTGGGGTGGGCAAGTCCATGGACCAACAGTTCAATTACCCCTTCCAGAACTGGGCAGTGGACATTGGGCAGCCCCTGGACCTGGGAAAGCTGCCTATGTGAGGAGTATCAAAGTCATCAACAAAGACAGCCAGTACTTCATTCCAGGCACACACAACACATTTTCAGGCAGTACTAGACCATTTTGCTATGATGCCGGAGATATCAGGTTCAACGATGATGGAGCCCGTTTTTTATATGGTGGACCTGGTAATTGCCCAAAGTGATACATCTGTAGTGTACTAGCATGTTGTACCAAATAAATCAATGTTCGAGTTCAATGCCCATCGGTATTTTGGTAAAAAAAAAAAAAAAAAAA]
consensusID : consensus_8630#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 224 fasta sequence
[GAATTTTGAAGGATGAAATATATATCAATTTATTTATGCAAGACTTTATTTAATCATGTCGCCGATCACCACACATTGTAGGACCCGAAGACCGGAAATTGGTGGCTAGCATATGGGCGTGATAAAAAACCACTTGGATATTGGCCTCCTTCAATTTTCACCTACATGAATGAAAAAGCAAGTGCTTGTTTTTGGGGTGGGCAAGTCCATGGACCAACAGTTCA]
[+] EMBL AA750745 [GAATTTTGAAGGATGAAATATATATCAATTTATTTATGCAAGACTTTATTTAATCATGTCGCCGATCACCACACATTGTAGGACCCGAAGACCGGAAATTGGTGGCTAGCATATGGGCGTGATAAAAAACCACTTGGATATTGGCCTCCTTCAATTTTCACCTACATGAATGAAAAAGCAAGTGCTTGTTTTTGGGGTGGGCAAGTCCATGGACCAACAGTTCA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8630#1 ------------------------------------------------------------
consensus_8630#2 --------------------------------GGTTCTATGGTATGGCCAAACTACCATG 28
consensus_8630#3 ------------------------------------------------------------
consensus_8630#0 TCAGTTTTCTCAATGACCAAACCACTAGAACTTCCAGTGATAATTTTCATATCATATCTT 60
consensus_8630#1 --------------------------------------------GTGAACATGCCATGCT 16
consensus_8630#2 GTGACAACTTTGCGAGATTTTATATATACTGGCAAGTTAATACGGTGAACATGCCATGCT 88
consensus_8630#3 ------------------------------------------------------------
consensus_8630#0 GTCCTCCTTGCGGCAGGAATACAAGAAGGTAGATATGTAAAGCATGAAGCAAGTTATGAT 120
consensus_8630#1 TTGATAATATGTGTCCGGGCCTTGTACAAG-TCAGTAAGAGTGTTGGTATTGGTG-GGAG 74
consensus_8630#2 TTGATCATATGTGTCCTGGCTTTGTACAAG-TCAGTAAGAGTGTTGGTATTGGTG-GGAG 146
consensus_8630#3 --------------------------------------------GAATTTTGAAG-GATG 15
consensus_8630#0 CAACCTATTTCCGACAAGATTATCAACGAGATCATTGAGACTGGAGACGGCGACGTGTTT 180
* * *
consensus_8630#1 AATTGAACCAGTTTCTACCTATAATGGAGATCAGT--ATGAAATTTCTG-TTACTGTA-- 129
consensus_8630#2 AATTGAACCAGTTTCTNCCTATAATGGAGATCAGT--ATGAAATTACTG-TTACTATA-- 201
consensus_8630#3 AAATATATATCAATTTATTTATGCAAGACTTTATTTAATCATGTCGCCGATCACCACACA 75
consensus_8630#0 CATTGCATCGATATCAATCTACAACCAGCACTATCTCATCCGTTGTTGAAAGGGCACATA 240
* * * * ** * ** * *
consensus_8630#1 TCAAAGG----ACCCGAAGACAGGAAATTGGTGGCTAGCATATGGGCGTGATAAAAAACC 185
consensus_8630#2 TCAAAGG----ACCCGAAGACAGGAAATTGGTGGCTAGCATATGGGCGTGATAAAAAACC 257
consensus_8630#3 TTGTAGG----ACCCGAAGACCGGAAATTGGTGGCTAGCATATGGGCGTGATAAAAAACC 131
consensus_8630#0 ATACAGATGGAGCCCACCTCTTATCCATCAGAGCTGAAAATCAAATCATCATCAGACACT 300
** *** ** * * * ** * * ** * * **
consensus_8630#1 CCTTGGATATTGGCC--TCCTTCAATTTTCACCTACATGAATGAAAAAGCAA-GTGCTTG 242
consensus_8630#2 ACTTGGATATTGGCC--TCCTTCAATTTTTACCTACATGAATGAAAAAGCAA-GTGCTTG 314
consensus_8630#3 ACTTGGATATTGGCC--TCCTTCAATTTTCACCTACATGAATGAAAAAGCAA-GTGCTTG 188
consensus_8630#0 ATAGCGACAGAAGCTCATCTGCCTACCATTGCATGCCCAAAGGGAACAATACCATTGTTA 360
** * ** ** * * * * * * ** * ** * * * **
consensus_8630#1 TTTTTGGGGTGGGCAAGTCCATGGAC-CAAC--AGTTCAATTACACCTTCCAGAACTGGG 299
consensus_8630#2 TTTTTGGGGTGGGCAAGTCCATGGAC-CAAC--AGTTCAATTACCCCTTCCAGAACTGGG 371
consensus_8630#3 TTTTTGGGGTGGGCAAGTCCATGGAC-CAAC--AGTTCA--------------------- 224
consensus_8630#0 CAAAATAGTAAAGCTGATCTGAAGACACAATTTAGTTTTGATCCAATCGGTAATACCCAT 420
* ** ** *** *** ****
consensus_8630#1 CAGTGGACATTGGGCAGCCACTGGACCTGGGAAAGCTGCCTATGTGAGGAGTATCAAAGT 359
consensus_8630#2 CAGTGGACATTGGGCAGCCCCTGGACCTGGGAAAGCTGCCTATGTGAGGAGTATCAAAGT 431
consensus_8630#3 ------------------------------------------------------------
consensus_8630#0 CATCGTGGAGGGGAGAGA-GCTGGGTGTACAACATATGATGAAATATATGGAACACAAGT 479
consensus_8630#1 CATCAACAAAGACAGCCAGTACTTCATTCCAGGCACACACAACACATTTTCAGGCAGTAC 419
consensus_8630#2 CATCAACAAAGACAGCCAGTACTTCATTCCAGGCACACACAACACATTTTCAGGCAGTAC 491
consensus_8630#3 ------------------------------------------------------------
consensus_8630#0 TGCAATCAATGTCTATGAGCCAAAAGTGCGAGGACAAAATAATCTTAGTGCATCATGGGC 539
consensus_8630#1 TAGACCATTTTGCTATGATGCTGGAGATATCAGGTTCAACGATGATGGAGCCCGTCTCTT 479
consensus_8630#2 TAGACCATTTTGCTATGATGCCGGAGATATCAGGTTCAACGATGATGGAGCCCGTTTTTT 551
consensus_8630#3 ------------------------------------------------------------
consensus_8630#0 ATTAATGGTAAACGGACCTACTGGAAATTATGAGGGAATCGGTGCTGGTTCTATTGTATG 599
consensus_8630#1 ATATGGTGGACCTGGTAATTGCACAAAGTGATACATCTGTAGTGTACTAGCATGTTGTAT 539
consensus_8630#2 ATATGGTGGACCTGGTAATTGCCCAAAGTGATACATCTGTAGTGTACTAGCATGTTGTAC 611
consensus_8630#3 ------------------------------------------------------------
consensus_8630#0 GCCAAACTACCATGGTGACAACTTTGCGAGAT-TTCATATATACTGGCAAGNTAATACGG 658
consensus_8630#1 CAAATAAATCAATGTTCGAGTTCAATGCCCATCGGTATTTTGGTAGATCTGAGTCCAACT 599
consensus_8630#2 CAAATAAATCAATGTTCGAGTTCAATGCCCATCGGTATTTTGGTAAAAAAAAAAAAAAAA 671
consensus_8630#3 ------------------------------------------------------------
consensus_8630#0 TGAACATGCCA-TGCTTTGATCATATGTGTCCTGGCTTTGTACAAGTCAGTAAGAGTGNT 717
consensus_8630#1 AATATAATTA--ATATTTGACGCGATTGCTGGTTGTATTAGAAATGTTGTTTGCAACGAT 657
consensus_8630#2 AAA--------------------------------------------------------- 674
consensus_8630#3 ------------------------------------------------------------
consensus_8630#0 GGTATTGGTGGGAGAATTGAACCAGNTTCTACCTATAATGGGAGATCAGTATGAAANTAC 777
consensus_8630#1 GAATCTGCTGCCACCTTTCGTTCAAAAAAAAAAA-------------------------- 691
consensus_8630#2 ------------------------------------------------------------
consensus_8630#3 ------------------------------------------------------------
consensus_8630#0 TGGTACTGNATCAAAGGGACCCGAANACAGGAAAATGGGNGGCTAGCATATNGGGCGNGA 837
consensus_8630#1 --------------------------------------
consensus_8630#2 --------------------------------------
consensus_8630#3 --------------------------------------
consensus_8630#0 TNAAAAANCACTTGGGATATTGGGCCTCCTTTNAATTT 875
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||