These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8631#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 627 fasta sequence [CGGAATCCTCTACGATGGCCGCCGCCGCCGCGAGGTCGCTGCTCCGCTCGTCCGCCTCTCTCCTCCGCGCGGCGCCGGCGAGGTCCGCGTCCGCGTCCTCCTCCGCCGCGCGCCCGTCTCTCCGTCGCGCGCTGGCCGCGCCCCCTCGCATCCTCAGGTCGCCTGTTGAGCTGAGTGTATGCGTGGAGTCCCTGCTGCCTCTGCACAGCGCCACCGCCGCCGCGCGGATG-ACGTCCATGCTCGCCGTTCCCGGGCAAGGCCTCGGGTG-GCTCACGGAAGCTGAAACTGATGGATTATGCTGAATTACTATTCTTGGACAACAGCTGATACTGATGGAGTATGACGGCAGCCTGCTTCTGGAACCAGGAGA-TTAGTAGTCCGTCAAGTTCATTTGTGAGCCTGCAGAATTAGTTAGAAAAGGAAGCACTCTTTTCTTTTTATTTATGTGAACTATGAAGATGGCTTAATAAACTACTTTGGATATTGCTCAGAACCCTTTCTCCCTCTTCATTGACCAGATCCTTTTGTAATGGAAACCATTGGAGGACCAATGTATGCGTTGCTAGCTACTGTAAAATGTTGCAGAATTTTTTTTTCTTTTGATCAAGTGTTTTAAAAAAAAAAAAA] [+] EMBL AU108934 [CGGAATCCTCTACGATGGCCGCCGCCGCCGCGAGGTCGCTGCTCCGCTCGTCCGCCTCTCTCCTCCGCGCGGCGCCGGCGAGGTCCGCGTCCGCGTCCTCCTCCGCCGCGCGCCCGTCTCTCCGTCGCGCGCTGGCCGCGCCCCCTCGCATCCTCAGGTCGCCTGTTGAGCTGAGTGTATGCGTGGAGTCCCTGCTGCCTCTGCACAGCGCCACCGCCGCCGCGCGGATGAACGTCCATGCTCGCCGTTCCCGGGNAAGGCCTCGGGTGNGCTCACGGAAGCTGAAACTGATGGATTATGCTGAATTACTATTCTTGGACAACAGCTGATACTGATGGAGTATGACGGCAGCCTGCTTNTGGAACCAGGAGATTTAGTAGTCCGTCAAGTT ] [+] EMBL AK063492 [ TCCTCTACGATGGCCGCCGCCGCCGCGAGGTCGCTGCTCCGCTCGTCCGCCTCTCTCCTCCGCGCGGCGCCGGCGAGGTCCGCGTCCGCGTCCTCCTCCGCCGCGCGCCCGTCTCTCCGTCGCGCGCTGGCCGCGCCCCCTCGCATCCTCAGGTCGCCTGTTGAGCTGAGTGTATGCGTGGAGTCCCTGCTGCCTCTGCACAGCGCCACCGCCGCCGCGCGGATG ACGTCCATGCTCGCCGTTCCCGGGCAAGGCCTCGGGTG GCTCACGGAAGCTGAAACTGATGGATTATGCTGAATTACTATTCTTGGACAACAGCTGATACTGATGGAGTATGACGGCAGCCTGCTTCTGGAACCAGGAGA TTAGTAGTCCGTCAAGTTCATTTGTGAGCCTGCAGAATTAGTTAGAAAAGGAAGCACTCTTTTCTTTTTATTTATGTGAACTATGAAGATGGCTTAATAAACTACTTTGGATATTGCTCAGAACCCTTTCTCCCTCTTCATTGACCAGATCCTTTTGTAATGGAAACCATTGGAGGACCAATGTATGCGTTGCTAGCTACTGTAAAATGTTGCAGA ] [+] EMBL OS0934A [ GAGGTCGCTGCTCCGCTCGTCCGCCTCTCTCCTCCGCGCGGCGCCGGCGAGGTCCGCGTCCGCGTCCTCCTCCGCCGCGCGCCCGTCTCTCCGTCGCGCGCTGGCCGCGCCCCCTCGCATCCTCAGGTCGCCTGTTGAGCTGAGTGTATGCGTGGAGTCCCTGCTGCCTCTGCACAGCGCCACCGCCGCCGCGCGGATG ACGTCCATGCTCGCCGTTCCCGGGCAAGGCCTCGGGTG GCTCACGGAAGCTGAAACTGATGGATTATGCTGAATTACTATTCTTGGACAACAGCTGATACTGATGGAGTATGACGGCAGCCTGCTTCTGGAA CAGGAGA TTAGTAGTCCGTNAAGTTCATTTGTGAGCCTGCAGAATT ] [+] EMBL AU032302 [ G GCTCACGGAAGCTGAAACTGATGGNTTATGCTGAATTACTATTCTTGGACAACAGCTGATACTGATGGAGTATGACGGCAGCCTGCTTCTGGAACCAGGAGA TTAGTAGTCCGTCAAGTTCATTTGTGAGCCTGCAGAATTAGTTAGAAAAGGAAGCACTCTTTTCTTTTTATTTATGTGAACTATGAAGATGGCTTAATAAACTACTTTGGATATTGCTCAGAACCCTTTCTCCCTCTTCATTGACCAGATCCTTTTGTAATGGAAACCATTGGAGGACCAATGTATNCGTTGCTAGCTACTGTAAAATGTTGCATAATTTTTTTTTCTTTTGATCAAGTGTTTTAAAAAAAAAAAAA] consensusID : consensus_8631#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 557 fasta sequence [CGCCGCCGCGAGGTCGCTGCTCCGCTCGTCCGCCTCTCTCCTCCGCGCGGCGCCGGCGAGGTCCGCGTCCGCGTCCTCCTCCGCCGCGCGCCCGTCTCTCCGTCGCGCGCTGGCCGCGCCCCCTCGCATCCTCAGGTCGCCTGTTGAGCTGAGTGTATGCGTGGAGTCCCTGCTGCCTCTGCACAGCGCCACCGCCGCCGCGCGGATGACGTCCATGCTCGCCGTTCCCGGGCAAGGCCTCGGGTGGCTCACGGAAGCTGATACTGATGGAGTATGACGGCAGCCTGCTTCTGGAACCAGGAGATTAGTAGTCCGTCAAGTTCATTTGTGAGCCTGCAGAATTAGTTAGAAAAGGAAGCACTCTTTTCTTTTTATTTATGTGAACTATGAAGATGGCTTAATAAACTACTTTGGATATTGCTCAGAACCCTTTCTCCCTCTTCATTGACCAGATCCTTTTGTAATGGAAACCATTGGAGGACCAATGTATGCGTTGCTAGCTACTGTAAAATGTTGCAGAATTTTTTTTTCTTTTGATCAAGTGATTTAAAAATGCT] [+] EMBL AK062940 [CGCCGCCGCGAGGTCGCTGCTCCGCTCGTCCGCCTCTCTCCTCCGCGCGGCGCCGGCGAGGTCCGCGTCCGCGTCCTCCTCCGCCGCGCGCCCGTCTCTCCGTCGCGCGCTGGCCGCGCCCCCTCGCATCCTCAGGTCGCCTGTTGAGCTGAGTGTATGCGTGGAGTCCCTGCTGCCTCTGCACAGCGCCACCGCCGCCGCGCGGATGACGTCCATGCTCGCCGTTCCCGGGCAAGGCCTCGGGTGGCTCACGGAAGCTGATACTGATGGAGTATGACGGCAGCCTGCTTCTGGAACCAGGAGATTAGTAGTCCGTCAAGTTCATTTGTGAGCCTGCAGAATTAGTTAGAAAAGGAAGCACTCTTTTCTTTTTATTTATGTGAACTATGAAGATGGCTTAATAAACTACTTTGGATATTGCTCAGAACCCTTTCTCCCTCTTCATTGACCAGATCCTTTTGTAATGGAAACCATTGGAGGACCAATGTATGCGTTGCTAGCTACTGTAAAATGTTGCAGAATTTTTTTTTCTTTTGATCAAGTGATTTAAAAATGCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8631#0 CGGAATCCTCTACGATGGCCGCCGCCGCCGCGAGGTCGCTGCTCCGCTCGTCCGCCTCTC 60 consensus_8631#1 ----------------------CGCCGCCGCGAGGTCGCTGCTCCGCTCGTCCGCCTCTC 38 ************************************** consensus_8631#0 TCCTCCGCGCGGCGCCGGCGAGGTCCGCGTCCGCGTCCTCCTCCGCCGCGCGCCCGTCTC 120 consensus_8631#1 TCCTCCGCGCGGCGCCGGCGAGGTCCGCGTCCGCGTCCTCCTCCGCCGCGCGCCCGTCTC 98 ************************************************************ consensus_8631#0 TCCGTCGCGCGCTGGCCGCGCCCCCTCGCATCCTCAGGTCGCCTGTTGAGCTGAGTGTAT 180 consensus_8631#1 TCCGTCGCGCGCTGGCCGCGCCCCCTCGCATCCTCAGGTCGCCTGTTGAGCTGAGTGTAT 158 ************************************************************ consensus_8631#0 GCGTGGAGTCCCTGCTGCCTCTGCACAGCGCCACCGCCGCCGCGCGGATGACGTCCATGC 240 consensus_8631#1 GCGTGGAGTCCCTGCTGCCTCTGCACAGCGCCACCGCCGCCGCGCGGATGACGTCCATGC 218 ************************************************************ consensus_8631#0 TCGCCGTTCCCGGGCAAGGCCTCGGGTGGCTCACGGAAGCTGAAACTGATGGATTATGCT 300 consensus_8631#1 TCGCCGTTCCCGGGCAAGGCCTCGGGTGGCTCACGGAAGCTGA----------------- 261 ******************************************* consensus_8631#0 GAATTACTATTCTTGGACAACAGCTGATACTGATGGAGTATGACGGCAGCCTGCTTCTGG 360 consensus_8631#1 ---------------------------TACTGATGGAGTATGACGGCAGCCTGCTTCTGG 294 ********************************* consensus_8631#0 AACCAGGAGATTAGTAGTCCGTCAAGTTCATTTGTGAGCCTGCAGAATTAGTTAGAAAAG 420 consensus_8631#1 AACCAGGAGATTAGTAGTCCGTCAAGTTCATTTGTGAGCCTGCAGAATTAGTTAGAAAAG 354 ************************************************************ consensus_8631#0 GAAGCACTCTTTTCTTTTTATTTATGTGAACTATGAAGATGGCTTAATAAACTACTTTGG 480 consensus_8631#1 GAAGCACTCTTTTCTTTTTATTTATGTGAACTATGAAGATGGCTTAATAAACTACTTTGG 414 ************************************************************ consensus_8631#0 ATATTGCTCAGAACCCTTTCTCCCTCTTCATTGACCAGATCCTTTTGTAATGGAAACCAT 540 consensus_8631#1 ATATTGCTCAGAACCCTTTCTCCCTCTTCATTGACCAGATCCTTTTGTAATGGAAACCAT 474 ************************************************************ consensus_8631#0 TGGAGGACCAATGTATGCGTTGCTAGCTACTGTAAAATGTTGCAGAATTTTTTTTTCTTT 600 consensus_8631#1 TGGAGGACCAATGTATGCGTTGCTAGCTACTGTAAAATGTTGCAGAATTTTTTTTTCTTT 534 ************************************************************ consensus_8631#0 TGATCAAGTGTTTTAAAAAAAAAAAAA 627 consensus_8631#1 TGATCAAGTGATTTAAAAATGCT---- 557 ********** ******** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||