cluster # 8631

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Oryza sativa
cluster # 8631 cluster # 8631 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8631#0 length = 627 sequences # 4

consensus_8631#1 length = 557 sequences # 1

consensusID : consensus_8631#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 627
fasta sequence

                              [CGGAATCCTCTACGATGGCCGCCGCCGCCGCGAGGTCGCTGCTCCGCTCGTCCGCCTCTCTCCTCCGCGCGGCGCCGGCGAGGTCCGCGTCCGCGTCCTCCTCCGCCGCGCGCCCGTCTCTCCGTCGCGCGCTGGCCGCGCCCCCTCGCATCCTCAGGTCGCCTGTTGAGCTGAGTGTATGCGTGGAGTCCCTGCTGCCTCTGCACAGCGCCACCGCCGCCGCGCGGATG-ACGTCCATGCTCGCCGTTCCCGGGCAAGGCCTCGGGTG-GCTCACGGAAGCTGAAACTGATGGATTATGCTGAATTACTATTCTTGGACAACAGCTGATACTGATGGAGTATGACGGCAGCCTGCTTCTGGAACCAGGAGA-TTAGTAGTCCGTCAAGTTCATTTGTGAGCCTGCAGAATTAGTTAGAAAAGGAAGCACTCTTTTCTTTTTATTTATGTGAACTATGAAGATGGCTTAATAAACTACTTTGGATATTGCTCAGAACCCTTTCTCCCTCTTCATTGACCAGATCCTTTTGTAATGGAAACCATTGGAGGACCAATGTATGCGTTGCTAGCTACTGTAAAATGTTGCAGAATTTTTTTTTCTTTTGATCAAGTGTTTTAAAAAAAAAAAAA]

[+] EMBL AU108934             [CGGAATCCTCTACGATGGCCGCCGCCGCCGCGAGGTCGCTGCTCCGCTCGTCCGCCTCTCTCCTCCGCGCGGCGCCGGCGAGGTCCGCGTCCGCGTCCTCCTCCGCCGCGCGCCCGTCTCTCCGTCGCGCGCTGGCCGCGCCCCCTCGCATCCTCAGGTCGCCTGTTGAGCTGAGTGTATGCGTGGAGTCCCTGCTGCCTCTGCACAGCGCCACCGCCGCCGCGCGGATGAACGTCCATGCTCGCCGTTCCCGGGNAAGGCCTCGGGTGNGCTCACGGAAGCTGAAACTGATGGATTATGCTGAATTACTATTCTTGGACAACAGCTGATACTGATGGAGTATGACGGCAGCCTGCTTNTGGAACCAGGAGATTTAGTAGTCCGTCAAGTT                                                                                                                                                                                                                                               ]
[+] EMBL AK063492             [     TCCTCTACGATGGCCGCCGCCGCCGCGAGGTCGCTGCTCCGCTCGTCCGCCTCTCTCCTCCGCGCGGCGCCGGCGAGGTCCGCGTCCGCGTCCTCCTCCGCCGCGCGCCCGTCTCTCCGTCGCGCGCTGGCCGCGCCCCCTCGCATCCTCAGGTCGCCTGTTGAGCTGAGTGTATGCGTGGAGTCCCTGCTGCCTCTGCACAGCGCCACCGCCGCCGCGCGGATG ACGTCCATGCTCGCCGTTCCCGGGCAAGGCCTCGGGTG GCTCACGGAAGCTGAAACTGATGGATTATGCTGAATTACTATTCTTGGACAACAGCTGATACTGATGGAGTATGACGGCAGCCTGCTTCTGGAACCAGGAGA TTAGTAGTCCGTCAAGTTCATTTGTGAGCCTGCAGAATTAGTTAGAAAAGGAAGCACTCTTTTCTTTTTATTTATGTGAACTATGAAGATGGCTTAATAAACTACTTTGGATATTGCTCAGAACCCTTTCTCCCTCTTCATTGACCAGATCCTTTTGTAATGGAAACCATTGGAGGACCAATGTATGCGTTGCTAGCTACTGTAAAATGTTGCAGA                                         ]
[+] EMBL OS0934A              [                               GAGGTCGCTGCTCCGCTCGTCCGCCTCTCTCCTCCGCGCGGCGCCGGCGAGGTCCGCGTCCGCGTCCTCCTCCGCCGCGCGCCCGTCTCTCCGTCGCGCGCTGGCCGCGCCCCCTCGCATCCTCAGGTCGCCTGTTGAGCTGAGTGTATGCGTGGAGTCCCTGCTGCCTCTGCACAGCGCCACCGCCGCCGCGCGGATG ACGTCCATGCTCGCCGTTCCCGGGCAAGGCCTCGGGTG GCTCACGGAAGCTGAAACTGATGGATTATGCTGAATTACTATTCTTGGACAACAGCTGATACTGATGGAGTATGACGGCAGCCTGCTTCTGGAA CAGGAGA TTAGTAGTCCGTNAAGTTCATTTGTGAGCCTGCAGAATT                                                                                                                                                                                                                          ]
[+] EMBL AU032302             [                                                                                                                                                                                                                                                                            G GCTCACGGAAGCTGAAACTGATGGNTTATGCTGAATTACTATTCTTGGACAACAGCTGATACTGATGGAGTATGACGGCAGCCTGCTTCTGGAACCAGGAGA TTAGTAGTCCGTCAAGTTCATTTGTGAGCCTGCAGAATTAGTTAGAAAAGGAAGCACTCTTTTCTTTTTATTTATGTGAACTATGAAGATGGCTTAATAAACTACTTTGGATATTGCTCAGAACCCTTTCTCCCTCTTCATTGACCAGATCCTTTTGTAATGGAAACCATTGGAGGACCAATGTATNCGTTGCTAGCTACTGTAAAATGTTGCATAATTTTTTTTTCTTTTGATCAAGTGTTTTAAAAAAAAAAAAA]




>consensus_8631#0
CGGAATCCTCTACGATGGCCGCCGCCGCCGCGAGGTCGCTGCTCCGCTCGTCCGCCTCTC
TCCTCCGCGCGGCGCCGGCGAGGTCCGCGTCCGCGTCCTCCTCCGCCGCGCGCCCGTCTC
TCCGTCGCGCGCTGGCCGCGCCCCCTCGCATCCTCAGGTCGCCTGTTGAGCTGAGTGTAT
GCGTGGAGTCCCTGCTGCCTCTGCACAGCGCCACCGCCGCCGCGCGGATGACGTCCATGC
TCGCCGTTCCCGGGCAAGGCCTCGGGTGGCTCACGGAAGCTGAAACTGATGGATTATGCT
GAATTACTATTCTTGGACAACAGCTGATACTGATGGAGTATGACGGCAGCCTGCTTCTGG
AACCAGGAGATTAGTAGTCCGTCAAGTTCATTTGTGAGCCTGCAGAATTAGTTAGAAAAG
GAAGCACTCTTTTCTTTTTATTTATGTGAACTATGAAGATGGCTTAATAAACTACTTTGG
ATATTGCTCAGAACCCTTTCTCCCTCTTCATTGACCAGATCCTTTTGTAATGGAAACCAT
TGGAGGACCAATGTATGCGTTGCTAGCTACTGTAAAATGTTGCAGAATTTTTTTTTCTTT
TGATCAAGTGTTTTAAAAAAAAAAAAA

consensusID : consensus_8631#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 557
fasta sequence

                              [CGCCGCCGCGAGGTCGCTGCTCCGCTCGTCCGCCTCTCTCCTCCGCGCGGCGCCGGCGAGGTCCGCGTCCGCGTCCTCCTCCGCCGCGCGCCCGTCTCTCCGTCGCGCGCTGGCCGCGCCCCCTCGCATCCTCAGGTCGCCTGTTGAGCTGAGTGTATGCGTGGAGTCCCTGCTGCCTCTGCACAGCGCCACCGCCGCCGCGCGGATGACGTCCATGCTCGCCGTTCCCGGGCAAGGCCTCGGGTGGCTCACGGAAGCTGATACTGATGGAGTATGACGGCAGCCTGCTTCTGGAACCAGGAGATTAGTAGTCCGTCAAGTTCATTTGTGAGCCTGCAGAATTAGTTAGAAAAGGAAGCACTCTTTTCTTTTTATTTATGTGAACTATGAAGATGGCTTAATAAACTACTTTGGATATTGCTCAGAACCCTTTCTCCCTCTTCATTGACCAGATCCTTTTGTAATGGAAACCATTGGAGGACCAATGTATGCGTTGCTAGCTACTGTAAAATGTTGCAGAATTTTTTTTTCTTTTGATCAAGTGATTTAAAAATGCT]

[+] EMBL AK062940             [CGCCGCCGCGAGGTCGCTGCTCCGCTCGTCCGCCTCTCTCCTCCGCGCGGCGCCGGCGAGGTCCGCGTCCGCGTCCTCCTCCGCCGCGCGCCCGTCTCTCCGTCGCGCGCTGGCCGCGCCCCCTCGCATCCTCAGGTCGCCTGTTGAGCTGAGTGTATGCGTGGAGTCCCTGCTGCCTCTGCACAGCGCCACCGCCGCCGCGCGGATGACGTCCATGCTCGCCGTTCCCGGGCAAGGCCTCGGGTGGCTCACGGAAGCTGATACTGATGGAGTATGACGGCAGCCTGCTTCTGGAACCAGGAGATTAGTAGTCCGTCAAGTTCATTTGTGAGCCTGCAGAATTAGTTAGAAAAGGAAGCACTCTTTTCTTTTTATTTATGTGAACTATGAAGATGGCTTAATAAACTACTTTGGATATTGCTCAGAACCCTTTCTCCCTCTTCATTGACCAGATCCTTTTGTAATGGAAACCATTGGAGGACCAATGTATGCGTTGCTAGCTACTGTAAAATGTTGCAGAATTTTTTTTTCTTTTGATCAAGTGATTTAAAAATGCT]




>consensus_8631#1
CGCCGCCGCGAGGTCGCTGCTCCGCTCGTCCGCCTCTCTCCTCCGCGCGGCGCCGGCGAG
GTCCGCGTCCGCGTCCTCCTCCGCCGCGCGCCCGTCTCTCCGTCGCGCGCTGGCCGCGCC
CCCTCGCATCCTCAGGTCGCCTGTTGAGCTGAGTGTATGCGTGGAGTCCCTGCTGCCTCT
GCACAGCGCCACCGCCGCCGCGCGGATGACGTCCATGCTCGCCGTTCCCGGGCAAGGCCT
CGGGTGGCTCACGGAAGCTGATACTGATGGAGTATGACGGCAGCCTGCTTCTGGAACCAG
GAGATTAGTAGTCCGTCAAGTTCATTTGTGAGCCTGCAGAATTAGTTAGAAAAGGAAGCA
CTCTTTTCTTTTTATTTATGTGAACTATGAAGATGGCTTAATAAACTACTTTGGATATTG
CTCAGAACCCTTTCTCCCTCTTCATTGACCAGATCCTTTTGTAATGGAAACCATTGGAGG
ACCAATGTATGCGTTGCTAGCTACTGTAAAATGTTGCAGAATTTTTTTTTCTTTTGATCA
AGTGATTTAAAAATGCT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8631#0      CGGAATCCTCTACGATGGCCGCCGCCGCCGCGAGGTCGCTGCTCCGCTCGTCCGCCTCTC 60
consensus_8631#1      ----------------------CGCCGCCGCGAGGTCGCTGCTCCGCTCGTCCGCCTCTC 38
                                            **************************************

consensus_8631#0      TCCTCCGCGCGGCGCCGGCGAGGTCCGCGTCCGCGTCCTCCTCCGCCGCGCGCCCGTCTC 120
consensus_8631#1      TCCTCCGCGCGGCGCCGGCGAGGTCCGCGTCCGCGTCCTCCTCCGCCGCGCGCCCGTCTC 98
                      ************************************************************

consensus_8631#0      TCCGTCGCGCGCTGGCCGCGCCCCCTCGCATCCTCAGGTCGCCTGTTGAGCTGAGTGTAT 180
consensus_8631#1      TCCGTCGCGCGCTGGCCGCGCCCCCTCGCATCCTCAGGTCGCCTGTTGAGCTGAGTGTAT 158
                      ************************************************************

consensus_8631#0      GCGTGGAGTCCCTGCTGCCTCTGCACAGCGCCACCGCCGCCGCGCGGATGACGTCCATGC 240
consensus_8631#1      GCGTGGAGTCCCTGCTGCCTCTGCACAGCGCCACCGCCGCCGCGCGGATGACGTCCATGC 218
                      ************************************************************

consensus_8631#0      TCGCCGTTCCCGGGCAAGGCCTCGGGTGGCTCACGGAAGCTGAAACTGATGGATTATGCT 300
consensus_8631#1      TCGCCGTTCCCGGGCAAGGCCTCGGGTGGCTCACGGAAGCTGA----------------- 261
                      *******************************************                 

consensus_8631#0      GAATTACTATTCTTGGACAACAGCTGATACTGATGGAGTATGACGGCAGCCTGCTTCTGG 360
consensus_8631#1      ---------------------------TACTGATGGAGTATGACGGCAGCCTGCTTCTGG 294
                                                 *********************************

consensus_8631#0      AACCAGGAGATTAGTAGTCCGTCAAGTTCATTTGTGAGCCTGCAGAATTAGTTAGAAAAG 420
consensus_8631#1      AACCAGGAGATTAGTAGTCCGTCAAGTTCATTTGTGAGCCTGCAGAATTAGTTAGAAAAG 354
                      ************************************************************

consensus_8631#0      GAAGCACTCTTTTCTTTTTATTTATGTGAACTATGAAGATGGCTTAATAAACTACTTTGG 480
consensus_8631#1      GAAGCACTCTTTTCTTTTTATTTATGTGAACTATGAAGATGGCTTAATAAACTACTTTGG 414
                      ************************************************************

consensus_8631#0      ATATTGCTCAGAACCCTTTCTCCCTCTTCATTGACCAGATCCTTTTGTAATGGAAACCAT 540
consensus_8631#1      ATATTGCTCAGAACCCTTTCTCCCTCTTCATTGACCAGATCCTTTTGTAATGGAAACCAT 474
                      ************************************************************

consensus_8631#0      TGGAGGACCAATGTATGCGTTGCTAGCTACTGTAAAATGTTGCAGAATTTTTTTTTCTTT 600
consensus_8631#1      TGGAGGACCAATGTATGCGTTGCTAGCTACTGTAAAATGTTGCAGAATTTTTTTTTCTTT 534
                      ************************************************************

consensus_8631#0      TGATCAAGTGTTTTAAAAAAAAAAAAA 627
consensus_8631#1      TGATCAAGTGATTTAAAAATGCT---- 557
                      ********** ********