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Oryza sativa
cluster # 8636 cluster # 8636       Sequences # 5       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8636#0 length = 1145 sequences # 5  

consensusID : consensus_8636#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 1145
fasta sequence
                              [GCATCGACGTTTTCAAATCATAGGGGGTATTTGGACTTAAAAAAAAATGAAAACGCGAATATACCAGCCGAAAGTAAAGCTGCGGCGGCTGGGGTGAATGGCTCCCTCCTCTCCCCGCCGCGACCTCGACGGCGAGGGGACCGGCGGCGGGAGCTCGGCGGCGAGGGAGAAGGAGCGGCCGAGGTCCTTCGACGAGAAGACCCGGTCGGCGTGCTGGCGGAAGGCGGCGGTGGTGATGGGCCGGCACCCGGAGCGGTGGCGGCAGGACGCCGCCGGCAACGTCGTGTGCCGCCGCTTCTGGAGCTGCCACGGCTGCCTCTGCTACGAGTACGACCACATCGTCCCCTTCTCCAAAGGAGGGGAGTCTACTGTTGACAATTGCCAGATTCTTCAGACAAGGGTGAATCGGTCAAAATCTGATAAAGCATGGATAGAGCAGGCAGAAATGCAGGGATTTTCTTGTGATATCAAGTTCACTGATAAAGAACTTGATGTGATTGAAATGGCTGTCTATGGGGATGTCATCCGTCCTGGAAAGCAATGTCGCTGCAGGACAGTAGCTGAGATGCTTGGGAAGGTGAAGTCAAAGAATCAGATGGCTGCTTGCGAGTTGCCACATAATGATGCCTCCTAGCATAAGTCATATCGTTCTGCACAACTACACCAGATTCATTATGGTCCGCACGGGCAGCAAGCCTGAGATCACTACCCTGATTTCATGCTCTATTGTGATAATGAACATATTTGACTTTAGGATCTCTTACATTGGTTGTAACACCGTTACACCAACATGGTGTGCTAGGTTAGATCAGTTCCGTGTTGATTTGTGCAATTGGACTGGCTAGTTCGGTTCCTTTCACCCTGGGTAGTTTCAACTTACATGGTACTATCTATGGTTCATTAGCTGGGTTGGTTTATCTATAGTTGGGTCTCTAGAGAATTTTAGGACCTAATAGAAAGAGAGATCGATTTTGTAATTGGTAGCCACTTGCCAGTTTGTGAAACAAAACTGAAGTGGTATGTGAGCAGTAGGAACTGTACAAGAAATGCATTGCCGAAATGTCGGAGTAACTGTAGCCTGCACGCTGCAGTTAATTGCTCTGTGACATTTGCCATTCCTATGTTCCTGGAAAATCAAAGAGGCA]

[+] EMBL AK073900             [GCATCGACGTTTTCAAATCATAGGGGGTATTTGGACTTAAAAAAAAATGAAAACGCGAATATACCAGCCGAAAGTAAAGCTGCGGCGGCTGGGGTGAATGGCTCCCTCCTCTCCCCGCCGCGACCTCGACGGCGAGGGGACCGGCGGCGGGAGCTCGGCGGCGAGGGAGAAGGAGCGGCCGAGGTCCTTCGACGAGAAGACCCGGTCGGCGTGCTGGCGGAAGGCGGCGGTGGTGATGGGCCGGCACCCGGAGCGGTGGCGGCAGGACGCCGCCGGCAACGTCGTGTGCCGCCGCTTCTGGAGCTGCCACGGCTGCCTCTGCTACGAGTACGACCACATCGTCCCCTTCTCCAAAGGAGGGGAGTCTACTGTTGACAATTGCCAGATTCTTCAGACAAGGGTGAATCGGTCAAAATCTGATAAAGCATGGATAGAGCAGGCAGAAATGCAGGGATTTTCTTGTGATATCAAGTTCACTGATAAAGAACTTGATGTGATTGAAATGGCTGTCTATGGGGATGTCATCCGTCCTGGAAAGCAATGTCGCTGCAGGACAGTAGCTGAGATGCTTGGGAAGGTGAAGTCAAAGAATCAGATGGCTGCTTGCGAGTTGCCACATAATGATGCCTCCTAGCATAAGTCATATCGTTCTGCACAACTACACCAGATTCATTATGGTCCGCACGGGCAGCAAGCCTGAGATCACTACCCTGATTTCATGCTCTATTGTGATAATGAACATATTTGACTTTAGGATCTCTTACATTGGTTGTAACACCGTTACACCAACATGGTGTGCTAGGTTAGATCAGTTCCGTGTTGATTTGTGCAATTGGACTGGCTAGTTCGGTTCCTTTCACCCTGGGTAGTTTCAACTTACATGGTACTATCTATGGTTCATTAGCTGGGTTGGTTTATCTATAGTTGGGTCTCTAGAGAATTTTAGGACCTAATAGAAAGAGAGATCGATTTTGTAATTGGTAGCCACTTGCCAGTTTGTGAAACAAAACTGAAGTGGTATGTGAGCAGTAGGAACTGAACGAGAAATGCATTGCCGAAATGTCGCAGTAACTGTAGCCTGCACGCTGCAGTTAATTGCTCTGTGACATTTGCCATTCCTATGTTCCTGGAAAATCAAAGAGGCA]
[+] EMBL AK064034             [                                                     CGCGAATATACCAGCCGAAAGTAAAGCTGCGGCGGCTGGGGTGAATGGCTCCCTCCTCTCCCCGCCGCGACCTCGACGGCGAGGGGACCGGCGGCGGGAGCTCGGCGGCGAGGGAGAAGGAGCGGCCGAGGTCCTTCGACGAGAAGACCCGGTCGGCGTGCTGGCGGAAGGCGGCGGTGGTGATGGGCCGGCACCCGGAGCGGTGGCGGCAGGACGCCGCCGGCAACGTCGTGTGCCGCCGCTTCTGGAGCTGCCACGGCTGCCTCTGCTACGAGTACGACCACATCGTCCCCTTCTCCAAAGGAGGGGAGTCTACTGTTGACAATTGCCAGATTCTTCAGACAAGGGTGAATCGGTCAAAATCTGATAAAGCATGGATAGAGCAGGCAGAAATGCAGGGATTTTCTTGTGATATCAAGTTCACTGATAAAGAACTTGATGTGATTGAAATGGCTGTCTATGGGGATGTCATCCGTCCTGGAAAGCAATGTCGCTGCAGGACAGTAGCTGAGATGCTTGGGAAGGTGAAGTCAAAGAATCAGATGGCTGCTTGCGAGTTGCCACATAATGATGCCTCCTAGCATAAGTCATATCGTTCTGCACAACTACACCAGATTCATTATGGTCCGCACGGGCAGCAAGCCTGAGATCACTACCCTGATTTCATGCTCTATTGTGATAATGAACATATTTGACTTTAGGATCTCTTACATTGGTTGTAACACCGTTACACCAACATGGTGTGCTAGGTTAGATCAGTTCCGTGTTGATTTGTGCAATTGGACTGGCTAGTTC                                                                                                                                                                                                                                                                                                         ]
[+] EMBL OSC21401             [                                                                       AAGTAAAGCTGCGGCGGCTGGGGTGAATGGCTCCCTCCTCTCCCCGNCGCGACCTCGACGGCGAGGGGACCGTCGGCGGGAGCTCGGCGGCGAGGGAGAAGGAGCGGCCGAGGTCCTTCGACGAGAAGACCCGGTCGGCGTGCTGGCGGAAGGCGGCGGTGGTGATGGGCCGGCACCCGGAGCGGTGGCGGCAGGACGCCG CGGCAACGTCGTGTGCCGCCGCTTCTGGAGCTGCCACGGCTGCCTCTGCTACGAGTACGACCACATCGTCCCCTTCTCCAAAGGAGGGGAGTCTACTGTTGACAATTGCCAGATTCTTCAGACAAGGGTGAATCGGTCAAAATCTGATAAAGCATGGATAGAGCAGGCAGAAATG AAGGATTTTCTTGTGATATCAAG TCACTGATAAAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL CB096993             [                                                                                                                                                                                                                                                                                                                                                                                                                          CAAAATCTGATAAAGCATGGATAGAGCAGGCAGAAATGCAGGGATTTTCTTGTGATATCAAGTTCACTGATAAAGAACTTGATGTGATTGAGATGGCTGTCTATGGGGATGTCATCCGTCCTGGAAGGCAATGTCGCTGCAGGACAGTAGCTGAGATGCTTGGGAAGGTGAAGTCAAAGAATCAGATGGCTGCTTGCGAGTTACCATATAATGATGCCTCCTAGCATAAGTCATATCGTTCTGCACAACAACACCAGATTCATTATGGTCCGCACGG      AGCCTGAGATCACTACCCTGATTTCATGCTCTATTATGATAATGAACATATTTGACTTTAGGATCTCTAACATTGGTTGTAACACCGTTACACCAACATGGTGTGCTAGGTAAGATCAGTTCCGTGTTGATTTGTGCAATTGGACTGGCTAGTTTGGTTCCTTTCACCCTGGGTAGTTTCAACTTACATGGTACTATCTATGGTTCATTAGCTGGGTTGGTTTATCTATAGTTGGGTCTCTAGAGAATTTTAGGACCTAATAGAAAGAGAGATCGATTTTGTAATTGGTAGCCACTTGCCAGTTTGTGAAACAAAACTGAAGTGGTATGTGAGCAGTAGGAACTGTACAAGAAATGCATTGCCGAAATGTCGGAGTAACTGTAGCCTGCACGCTGCAGTTAATTGCTCTGTGACATTTtg                                ]
[+] EMBL CA766561             [                                                                                                                                                                                                                                                                                                                                                                                                                          CAAAATCTGATAAAGCATGGATAGAGCAGGCAGAAATGCAGGGATTTTCTTGTGATATCAAGTTCACTGATAAAGAACTTGATGTGATTGAGATGGCTGTCTATGGGGATGTCATCCGTCCTGGAAAGCAATGTCGCTGCAGGACAGTAGCTGAGATGCTTGGGAAGGTGAAGTCAAAGAATCAGATGGCTGCTTGCGAGTTACCATATAATGATGCCTCCTAGCATAAGTCATATCGTTCTGCACAACAACACCAGATTCATTATGGTCCGCACGG      AGCCTGAGATCACTACCCTGATTTCATGCTCTATTATGATAATGAACATATTTGACTTTAGGATCTCTAACATTGGTTGTAACACCGTTACACCAACATGGTGTGCTAGGTAAGATCAGTTCCGTGTTGATTTGTGCAATTGGACTGGCTAGTTTGGTTCCTTTCACCCTGGGTAGTTTCAACTTACATGGTACTATCTATGGTTCATTAGCTGGGTTGGTTTATCTATAGTTGGGTCTCTAGAGAATTTTAGGACCTAATAGAAAGAGAGATCGATTTTGTAATTGGTAGCCACTTGCCAGTTTGTGAAACAAAACTGAAGTGGTATGTGAGCAGTAGGAACTGTACAAGAAATGCATTGCCGAAATGTCGGAGTAACTGTAGCCTGCACGCTGCAGNTNATTGC                                              ]


>consensus_8636#0 GCATCGACGTTTTCAAATCATAGGGGGTATTTGGACTTAAAAAAAAATGAAAACGCGAAT ATACCAGCCGAAAGTAAAGCTGCGGCGGCTGGGGTGAATGGCTCCCTCCTCTCCCCGCCG CGACCTCGACGGCGAGGGGACCGGCGGCGGGAGCTCGGCGGCGAGGGAGAAGGAGCGGCC GAGGTCCTTCGACGAGAAGACCCGGTCGGCGTGCTGGCGGAAGGCGGCGGTGGTGATGGG CCGGCACCCGGAGCGGTGGCGGCAGGACGCCGCCGGCAACGTCGTGTGCCGCCGCTTCTG GAGCTGCCACGGCTGCCTCTGCTACGAGTACGACCACATCGTCCCCTTCTCCAAAGGAGG GGAGTCTACTGTTGACAATTGCCAGATTCTTCAGACAAGGGTGAATCGGTCAAAATCTGA TAAAGCATGGATAGAGCAGGCAGAAATGCAGGGATTTTCTTGTGATATCAAGTTCACTGA TAAAGAACTTGATGTGATTGAAATGGCTGTCTATGGGGATGTCATCCGTCCTGGAAAGCA ATGTCGCTGCAGGACAGTAGCTGAGATGCTTGGGAAGGTGAAGTCAAAGAATCAGATGGC TGCTTGCGAGTTGCCACATAATGATGCCTCCTAGCATAAGTCATATCGTTCTGCACAACT ACACCAGATTCATTATGGTCCGCACGGGCAGCAAGCCTGAGATCACTACCCTGATTTCAT GCTCTATTGTGATAATGAACATATTTGACTTTAGGATCTCTTACATTGGTTGTAACACCG TTACACCAACATGGTGTGCTAGGTTAGATCAGTTCCGTGTTGATTTGTGCAATTGGACTG GCTAGTTCGGTTCCTTTCACCCTGGGTAGTTTCAACTTACATGGTACTATCTATGGTTCA TTAGCTGGGTTGGTTTATCTATAGTTGGGTCTCTAGAGAATTTTAGGACCTAATAGAAAG AGAGATCGATTTTGTAATTGGTAGCCACTTGCCAGTTTGTGAAACAAAACTGAAGTGGTA TGTGAGCAGTAGGAACTGTACAAGAAATGCATTGCCGAAATGTCGGAGTAACTGTAGCCT GCACGCTGCAGTTAATTGCTCTGTGACATTTGCCATTCCTATGTTCCTGGAAAATCAAAG AGGCA



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)