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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8641#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1136 fasta sequence
[AAGGCAGCGAAAGAGGGCGCGAAACCGTAGAGGCGGGCGGCGAGCGGCGGCGGCGGCGGCGCGGAGATGAGCTCGTCGACGTCCGCCCGCGACGACGAGGCGCCGGACCTCGTCTGCCAGATCGACTGCGTCCACGGCATGGTCGACGCGCTCTCCTGCGTCCGCTGGAAGCGCCACCAGGACGCGGTGCTGGAGCTGTCGGAGCACGGCATCGTGCTCATCGTCGAGGAGAGTGGCTGCCTCCAGGCCAAGGTCTACCTCAAGCGTGAGCTGTTCATGGAATATGAGTACGCGGCAGAGGGGCGGCCGCGGTTTGGCCTCAGCCTGGGGCTCCTCGTCGATTGCCTCAACACGTTCTCGGCCCCGGGGCACTCCTCTCCTGTCGAGATCCGCTACCCTGGGCCTGATATGCAGCTTCTTCTCAAGTCAGTGGGCTCCCCAGATTCATGTATGTATGCAGAAATTAGAACCAGGATTCCAGATACAATCTCCTGGGATTACCATTTTGAGCATGCTGGGAATACACCAGTCACTTTTACTGTCAAGTCTGCTGTCCTGAAAGAATCGATCGAGGACCTTGAGTGGCCAGGTTCCAGCATTCAGATTCAAATGCAACCAGACCCCCCTTCGGTACTATTCAAAGGTGAAGGTCATGGTGACTTGCAGATTGAGTTCCCCTACTATGCAAATACAGATCTTCTCATTGCATTCCAATGTGACCATGAAACATCATACAGGTATAAGTACAAATTTCTTCGTGCAACAACTTCGAATTTCCCAAACAGTATTGTGAAGGAGAATCGTGGGAGCAAGGTGACAATTGGTAGGGGTGGGATGCTTAAAATCCAGCACCTGGTTTCAGTTGCAAGGCCAGGGTGTAAAGTTTTGGGATGGGATCTAAAGAGGGCCCAAAGCATTTTCCTTTTGCTGCTCAAGCAACAGTCTACAGCGTGGTGAACCTGAGTCAAAATAGCCTATTCATATTACTTGGGCAACCAAAAACATGGCCAAATTCAATATCATCTTTAAGACGAAATGGATTTTAATTTTTGGAGGAAGTTTGGTGTTGAATTTACGTTGCTTGCTACTAATTGTATGATGATTGCTTGACTCCGTTTTTGGAAGTTCATTATTGC]
[+] EMBL AK061226 [AAGGCAGCGAAAGAGGGCGCGAAACCGTAGAGGCGGGCGGCGAGCGGCGGCGGCGGCGGCGCGGAGATGAGCTCGTCGACGTCCGCCCGCGACGACGAGGCGCCGGACCTCGTCTGCCAGATCGACTGCGTCCACGGCATGGTCGACGCGCTCTCCTGCGTCCGCTGGAAGCGCCACCAGGACGCGGTGCTGGAGCTGTCGGAGCACGGCATCGTGCTCATCGTCGAGGAGAGTGGCTGCCTCCAGGCCAAGGTCTACCTCAAGCGTGAGCTGTTCATGGAATATGAGTACGCGGCAGAGGGGCGGCCGCGGTTTGGCCTCAGCCTGGGGCTCCTCGTCGATTGCCTCAACACGTTCTCGGCCCCGGGGCACTCCTCTCCTGTCGAGATCCGCTACCCTGGGCCTGATATGCAGCTTCTTCTCAAGTCAGTGGGCTCCCCAGATTCATGTATGTATGCAGAAATTAGAACCAGGATTCCAGATACAATCTCCTGGGATTACCATTTTGAGCATGCTGGGAATACACCAGTCACTTTTACTGTCAAGTCTGCTGTCCTGAAAGAATCGATCGAGGACCTTGAGTGGCCAGGTTCCAGCATTCAGATTCAAATGCAACCAGACCCCCCTTCGGTACTATTCAAAGGTGAAGGTCATGGTGACTTGCAGATTGAGTTCCCCTACTATGCAAATACAGATCTTCTCATTGCATTCCAATGTGACCATGAAACATCATACAGGTATAAGTACAAATTTCTTCGTGCAACAACTTCGAATTTCCCAAACAGTATTGTGAAGGAGAATCGTGGGAGCAAGGTGACAATTGGTAGGGGTGGGATGCTTAAAATCCAGCACCTGGTTTCAGTTGCAAGGCCAGGGTGTAAAGTTTTGGGATGGGATCTAAAGAGGGCCCAAAGCATTTTCCTTTTGCTGCTCAAGCAACAGTCTACAGCGTGGTGAACCTGAGTCAAAATAGCCTATTCATATTACTTGGGCAACCAAAAACATGGCCAAATTCAATATCATCTTTAAGACGAAATGGATTTTAATTTTTGGAGGAAGTTTGGTGTTGAATTTACGTTGCTTGCTACTAATTGTATGATGATTGCTTGACTCCGTTTTTGGAAGTTCATTATTGC]
consensusID : consensus_8641#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 988 fasta sequence
[AAAGGCAGCGAAAGAGGGCGCGAAACCGTAGAGGCGGGCGGCGAGCGGCGGCGGCGGCGGCGCGGAGATGAGCTCGTCGACGTCCGCCCGCGACGACGAGGCGCCGGACCTCGTCTGCCAGATCGACTGCGTCCACGGCATGGTCGACGCGCTCTCCTGCGTCCGCTGGAAGCGCCACCAGGACGCGGTGCTGGAGCTGTCGGAGCACGGCATCGTGCTCATCGTCGAGGAGAGTGGCTGCCTCCAGGCCAAGGTCTACCTCAAGCGTGAGCTGTTCATGGAATATGAGTACGCGGCAGAGGGGCGGCCGCGGTTTGGCCTCAGCCTGGGGCTCCTCGTCGATTGCCTCAACACGTTCTCGGCCCCGGGGCACTCCTCTCCTGTCGAGATCCGCTACCCTGGGCCTGATATGCAGCTTCTTCTCAAGTCAGTGGGCTCCCCAGATTCATGTATGTATGCAGAAATTAGAACCAGGATTCCAGATACAATCTCCTGGGATTACCATTTTGAGCATGCTGGGAATACACCAGTCACTTTTACTGTCAAGTCTGCTGTCCTGAAAGAATCGATCGAGGACCTTGAGTGGCCAGGTTCCAGCATTCAGATTCAAATGCAACCAGACCCCCCTTCGGTACTATTCAAAGGTGAAGGTCATGGTGACTTGCAGATTGAGTTCCCCTACTATGCAAATACAGATCTTCTCATTGCATTCCAATGTGACCATGAAACATCATACAGGTATAAGTACAAATTTCTTCGTGCAACAACTTCGAATTTCCCAAACAGTATTGTGAAGGAGAATCGTGGGAGCAAGGTGACAATTGGTA-GGGGTGGGATGCTTAAAATCCAGCACCTGGTTTCAGTTGCAAGGCCAGGTATGCAGAACTTCCGTAATGTTGCTGGAGGGGCTCAACAGCCAAGCCGAATTGCTTATATAGAGTTCTTTGTAAAGCCAGAGGAATATGAGATAAATGATGCGTAGGGATTG]
[+] EMBL AK074010 [AAAGGCAGCGAAAGAGGGCGCGAAACCGTAGAGGCGGGCGGCGAGCGGCGGCGGCGGCGGCGCGGAGATGAGCTCGTCGACGTCCGCCCGCGACGACGAGGCGCCGGACCTCGTCTGCCAGATCGACTGCGTCCACGGCATGGTCGACGCGCTCTCCTGCGTCCGCTGGAAGCGCCACCAGGACGCGGTGCTGGAGCTGTCGGAGCACGGCATCGTGCTCATCGTCGAGGAGAGTGGCTGCCTCCAGGCCAAGGTCTACCTCAAGCGTGAGCTGTTCATGGAATATGAGTACGCGGCAGAGGGGCGGCCGCGGTTTGGCCTCAGCCTGGGGCTCCTCGTCGATTGCCTCAACACGTTCTCGGCCCCGGGGCACTCCTCTCCTGTCGAGATCCGCTACCCTGGGCCTGATATGCAGCTTCTTCTCAAGTCAGTGGGCTCCCCAGATTCATGTATGTATGCAGAAATTAGAACCAGGATTCCAGATACAATCTCCTGGGATTACCATTTTGAGCATGCTGGGAATACACCAGTCACTTTTACTGTCAAGTCTGCTGTCCTGAAAGAATCGATCGAGGACCTTGAGTGGCCAGGTTCCAGCATTCAGATTCAAATGCAACCAGACCCCCCTTCGGTACTATTCAAAGGTGAAGGTCATGGTGACTTGCAGATTGAGTTCCCCTACTATGCAAATACAGATCTTCTCATTGCATTCCAATGTGACCATGAAACATCATACAGGTATAAGTACAAATTTCTTCGTGCAACAACTTCGAATTTCCCAAACAGTATTGTGAAGGAGAATCGTGGGAGCAAGGTGACAATTGGTA GGGGTGGGATGCTTAAAATCCAGCACCTGGTTTCAGTTGCAAGGCCAGGTATGCAGAACTTCCGTAATGTTGCTGGAGGGGCTCAACAGCCAAGCCGAATTGCTTATATAGAGTTCTTTGTAAAGCCAGAGGAATATGAGATAAATGATGCGTAGGGATTG]
[+] EMBL CF304911 [ CCTCAACACGTTCTCGGCCCCGGGGCACTCCTCTCCTGTCGAGATCCGCTACCCTGGGCCTGATATGCAGCTTCTTCTCAAGTCAGTGGGCTCCCCAGATTCATGTATGTATGCAGAAATTAGAACCAGGATTCCAGATACAATCTCCTGGGATTACCATTTTGAGCATGCTGGGAATACACCAGTCACTTTTACTGTCAAGTCTGCTGTCCTGAAAGAATCGATCGAGGACCTTGAGTGGCCAGGTTCCAGCATTCAGATTCAAATGCAACCAGACCCCCCTTCGGTACTATTCAAAGGTGAAGGTCATGGTGACTTGCAGATTGAGTTCCCCTACTATGCAAATACAGATCTTCTCATTGCATTCCAATGTGACCATGAAACATCATACAGGTATAAGTACAAATTTCTTCGTGCAACAACTTCGAATTTCCCAAACAGTATTGTGAAGGAGAATCGTGGGA ]
[+] EMBL CF304199 [ CTCAACACGTTCTCGGCCCCGGGGCACTCCTCTCCTGTCGAGATCCGCTACCCTGGGCCTGATATGCAGCTTCTTCTCAAGTCAGTGGGCTCCCCAGATTCATGTATGTATGCAGAAATTAGAACCAGGATTCCAGATACAATCTCCTGGGATTACCATTTTGAGCATGCTGGGAATACACCAGTCACTTTTACTGTCAAGTCTGCTGTCCTGAAAGAATCGATCGAGGACCTTGAGTGGCCAGGTTCCAGCATTCAGATTCAAATGCAACCAGACCCCCCTTCGGTACTATTCAAAGGTGAAGGTCATGGTGACTTGCAGATTGAGTTCCCCTACTATGCAAATACAGATCTTCTCATTGCATTCCAATGTGACCATGAAACATCATACAGGTATAAGTACAAATTTCTTCGTGCAACAACTTCGAATTTCCCAAACAGTATTGTGAAGGAGAATCGTGGGAGCAAGGTGACAATTGGTAGGGGGTGGGATGCTTAAAATCCAGCACCTGGTTTCAGTTGCAAGGCCAGGTATGCAGAACTTCCGTAATGTTGCTGGAGGGGCTCAACAGCCAAGCCGAATTGCTTATATAGAGTT ]
[+] EMBL CF304097 [ CTCAACACGTTCTCGGCCCCGGGGCACTCCTCTCCTGTCGAGATCCGCTACCCTGGGCCTGATATGCAGCTTCTTCTCAAGTCAGTGGGCTCCCCAGATTCATGTATGTATGCAGAAATTAGAACCAGGATTCCAGATACAATCTCCTGGGATTACCATTTTGAGCATGCTGGGAATACACCAGTCACTTTTACTGTCAAGTCTGCTGTCCTGAAAGAATCGATCGAGGACCTTGAGTGGCCAGGTTCCAGCATTCAGATTCAAATGCAACCAGACCCCCCTTCGGTACTATTCAAAGGTGAAGGTCATGGTGACTTGCAGATTGAGTTCCCCTACTATGCAAATACAGATCTTCTCATTGCATTCCAATGTGACCATGAAACATCATACAGGTATAAGTACAAATTTCTTCGTGCAACAACTTCGAATTTCCCAAACAGTATTGTGAAGGAGAATCGTGGGAGCAAGGTG ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8641#0 -AAGGCAGCGAAAGAGGGCGCGAAACCGTAGAGGCGGGCGGCGAGCGGCGGCGGCGGCGG 59
consensus_8641#1 AAAGGCAGCGAAAGAGGGCGCGAAACCGTAGAGGCGGGCGGCGAGCGGCGGCGGCGGCGG 60
***********************************************************
consensus_8641#0 CGCGGAGATGAGCTCGTCGACGTCCGCCCGCGACGACGAGGCGCCGGACCTCGTCTGCCA 119
consensus_8641#1 CGCGGAGATGAGCTCGTCGACGTCCGCCCGCGACGACGAGGCGCCGGACCTCGTCTGCCA 120
************************************************************
consensus_8641#0 GATCGACTGCGTCCACGGCATGGTCGACGCGCTCTCCTGCGTCCGCTGGAAGCGCCACCA 179
consensus_8641#1 GATCGACTGCGTCCACGGCATGGTCGACGCGCTCTCCTGCGTCCGCTGGAAGCGCCACCA 180
************************************************************
consensus_8641#0 GGACGCGGTGCTGGAGCTGTCGGAGCACGGCATCGTGCTCATCGTCGAGGAGAGTGGCTG 239
consensus_8641#1 GGACGCGGTGCTGGAGCTGTCGGAGCACGGCATCGTGCTCATCGTCGAGGAGAGTGGCTG 240
************************************************************
consensus_8641#0 CCTCCAGGCCAAGGTCTACCTCAAGCGTGAGCTGTTCATGGAATATGAGTACGCGGCAGA 299
consensus_8641#1 CCTCCAGGCCAAGGTCTACCTCAAGCGTGAGCTGTTCATGGAATATGAGTACGCGGCAGA 300
************************************************************
consensus_8641#0 GGGGCGGCCGCGGTTTGGCCTCAGCCTGGGGCTCCTCGTCGATTGCCTCAACACGTTCTC 359
consensus_8641#1 GGGGCGGCCGCGGTTTGGCCTCAGCCTGGGGCTCCTCGTCGATTGCCTCAACACGTTCTC 360
************************************************************
consensus_8641#0 GGCCCCGGGGCACTCCTCTCCTGTCGAGATCCGCTACCCTGGGCCTGATATGCAGCTTCT 419
consensus_8641#1 GGCCCCGGGGCACTCCTCTCCTGTCGAGATCCGCTACCCTGGGCCTGATATGCAGCTTCT 420
************************************************************
consensus_8641#0 TCTCAAGTCAGTGGGCTCCCCAGATTCATGTATGTATGCAGAAATTAGAACCAGGATTCC 479
consensus_8641#1 TCTCAAGTCAGTGGGCTCCCCAGATTCATGTATGTATGCAGAAATTAGAACCAGGATTCC 480
************************************************************
consensus_8641#0 AGATACAATCTCCTGGGATTACCATTTTGAGCATGCTGGGAATACACCAGTCACTTTTAC 539
consensus_8641#1 AGATACAATCTCCTGGGATTACCATTTTGAGCATGCTGGGAATACACCAGTCACTTTTAC 540
************************************************************
consensus_8641#0 TGTCAAGTCTGCTGTCCTGAAAGAATCGATCGAGGACCTTGAGTGGCCAGGTTCCAGCAT 599
consensus_8641#1 TGTCAAGTCTGCTGTCCTGAAAGAATCGATCGAGGACCTTGAGTGGCCAGGTTCCAGCAT 600
************************************************************
consensus_8641#0 TCAGATTCAAATGCAACCAGACCCCCCTTCGGTACTATTCAAAGGTGAAGGTCATGGTGA 659
consensus_8641#1 TCAGATTCAAATGCAACCAGACCCCCCTTCGGTACTATTCAAAGGTGAAGGTCATGGTGA 660
************************************************************
consensus_8641#0 CTTGCAGATTGAGTTCCCCTACTATGCAAATACAGATCTTCTCATTGCATTCCAATGTGA 719
consensus_8641#1 CTTGCAGATTGAGTTCCCCTACTATGCAAATACAGATCTTCTCATTGCATTCCAATGTGA 720
************************************************************
consensus_8641#0 CCATGAAACATCATACAGGTATAAGTACAAATTTCTTCGTGCAACAACTTCGAATTTCCC 779
consensus_8641#1 CCATGAAACATCATACAGGTATAAGTACAAATTTCTTCGTGCAACAACTTCGAATTTCCC 780
************************************************************
consensus_8641#0 AAACAGTATTGTGAAGGAGAATCGTGGGAGCAAGGTGACAATTGGTAGGGGTGGGATGCT 839
consensus_8641#1 AAACAGTATTGTGAAGGAGAATCGTGGGAGCAAGGTGACAATTGGTAGGGGTGGGATGCT 840
************************************************************
consensus_8641#0 TAAAATCCAGCACCTGGTTTCAGTTGCAAGGCCAGG-GTGTAAAGTTTTGGGATGGGATC 898
consensus_8641#1 TAAAATCCAGCACCTGGTTTCAGTTGCAAGGCCAGGTATGCAGAACTTCCGTAATGTTGC 900
************************************ ** * * ** * * * *
consensus_8641#0 TAAAGAGGGCCCAAAGCATTTTCCTTTTGCTGCTCAAGCAACAGTC-TACAGCGTGGTGA 957
consensus_8641#1 TGGAGGGGCTCAACAGCCAAGCCGAATTGCTTATATAGAGTTCTTTGTAAAGCCAGAGGA 960
* ** ** * * *** * ***** * ** * ** *** * **
consensus_8641#0 ACCTGAGTCAAAATAGCCTATTCATATTACTTGGGCAACCAAAAACATGGCCAAATTCAA 1017
consensus_8641#1 ATATGAGATAAA-TGATGCGTAGGGATTG------------------------------- 988
* **** *** * * ***
consensus_8641#0 TATCATCTTTAAGACGAAATGGATTTTAATTTTTGGAGGAAGTTTGGTGTTGAATTTACG 1077
consensus_8641#1 ------------------------------------------------------------
consensus_8641#0 TTGCTTGCTACTAATTGTATGATGATTGCTTGACTCCGTTTTTGGAAGTTCATTATTGC 1136
consensus_8641#1 -----------------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||