cluster # 8657

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Oryza sativa
cluster # 8657 cluster # 8657 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8657#0 length = 1092 sequences # 4

consensus_8657#1 length = 411 sequences # 1

consensusID : consensus_8657#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1092
fasta sequence

                              [TCAAAGTTGGGAAGCAGAATTAATACACACACTCCATCTCCATGGCACCCACGCCGTTGTTCCTCCTCCTGCTGCTCACCGGCGTTACGGCGGAGTCGGCGCACCCGGGCTACGCGGAGGGCGATGGCAGCAGCTGCGACGTGGCGGCGGTAGCGGTGGCAGAGAGGCGAGAGGAGTTCGACGGCGGGCGGATCGTGGACATCAGCCACTACTACCGGGAGGAGATGCCGGAGTGGGAGTCGGCGGACGGCACCGGCGGCGGGTTCCTGCGGCTGGTGCGGTCGATGCGCAACGGCTCCGACATCGCCAACTTCTCCGAGCTCCGCCTCACGGCGCACTCCGGCACGCACGTCGACGCGCCGGGCCACGTCTTCGACCACTACTACCACGCTGGCTTCGACGTCGACACGCTCGACCTCGCCATCCTCAACGGACCAGCGTTGTTGGTCGATGTTCCTAGGGATAGCAACATAACAGCTAACGTTATGGAATCCTTGCATATTCCCAAAGGAGTTCGGCGAGTTCTCTTTCGAACTTTAAATACAGACA-GGAAGCTTATGTGGAAGAAAGAATTTGATACA-AGCTATGTTGGTTTCATGAAAGATGGTGCTCAATGGTTGATTGATAACACAGACATTAGACTAGTTGGCGTTGACTACTTGTCAGTCGGAGCGTTTGATGAATGCATTCCTGCTCATTTAGTTTTTCTTGAGAAAAGAGAAGTCATCCTTGTGGAAGCCTTACATTTAGAGCATGTTACCCCAGGAATATATACCTTGCATTGCTTGCCACTAAGGTTACGTGGTTCTGAAGGTTCCCCGGCAAGATGTATTCTCATCAAGTAACATATGCTTATAAGGTTTACATCGACATCTTATATGTGTTGAAATGTTGAATGGTGTTGATGGTTGTCAAGTCAGATGCATCCACCTAGGACATATGTATATGACAAACTATGCATAGTATTTGACACATATATATGATTGTAAAATAAGATCATGTTGCCTTCTAACAGGTTAATGTCTGTGCATCTATCAGCTATAAACTTATATATATTACTATTGTAATTGACTACCAATGTAACAGTTGGAT]

[+] EMBL AK061798             [TCAAAGTTGGGAAGCAGAATTAATACACACACTCCATCTCCATGGCACCCACGCCGTTGTTCCTCCTCCTGCTGCTCACCGGCGTTACGGCGGAGTCGGCGCACCCGGGCTACGCGGAGGGCGATGGCAGCAGCTGCGACGTGGCGGCGGTAGCGGTGGCAGAGAGGCGAGAGGAGTTCGACGGCGGGCGGATCGTGGACATCAGCCACTACTACCGGGAGGAGATGCCGGAGTGGGAGTCGGCGGACGGCACCGGCGGCGGGTTCCTGCGGCTGGTGCGGTCGATGCGCAACGGCTCCGACATCGCCAACTTCTCCGAGCTCCGCCTCACGGCGCACTCCGGCACGCACGTCGACGCGCCGGGCCACGTCTTCGACCACTACTACCACGCTGGCTTCGACGTCGACACGCTCGACCTCGCCATCCTCAACGGACCAGCGTTGTTGGTCGATGTTCCTAGGGATAGCAACATAACAGCTAACGTTATGGAATCCTTGCATATTCCCAAAGGAGTTCGGCGAGTTCTCTTTCGAACTTTAAATACAGACA GGAAGCTTATGTGGAAGAAAGAATTTGATACA AGCTATGTTGGTTTCATGAAAGATGGTGCTCAATGGTTGATTGATAACACAGACATTAGACTAGTTGGCGTTGACTACTTGTCAGTCGGAGCGTTTGATGAATGCATTCCTGCTCATTTAGTTTTTCTTGAGAAAAGAGAAGTCATCCTTGTGGAAGCCTTACATTTAGAGCATGTTACCCCAGGAATATATACCTTGCATTGCTTGCCACTAAGGTTACGTGGTTCTGAAGGTTCCCCGGCAAGATGTATTCTCATCAAGTAACATATGCTTATAAGGTTTACATCGACATCTTATATGTGTTGAAATGTTGAATGGTGTTGATGGTTGTCAAGTCAGATGCATCCACCTAGGACATATGTATATGACAAACTATGCATAGTATTTGACACATATATATGATTGTAAAATAAGATCATGTTGCCTTCTAACAGGTTAATGTCTGTGCATCTATCAGCTATAAACTTATATATATTACTATTGTAATTGACTACCAATGTAACAGTTGGAT]
[+] EMBL AK098934             [                       TACACACACTCCATCTCCATGGCACCCACGCCGTTGTTCCTCCTCCTGCTGCTCACCGGCGTTACGGCGGAGCCGGCGCACCCGGGCTACGCGGAGGGCGATGGCAGCAGCTGCGACGTGGCGGCGGTAGCGGTGGCAGAGAGGCGAGAGGAGTTCGACGGCGGGCGGATCGTGGACATCAGCCACTACTACCGGGAGGAGATGCCGGAGTGGGAGTCGGCGGACGGCACCGGCGGCGGGTTCCTGCGGCTGGTGCGGTCGATGCGCAACGGCTCCGACATCGCCAACTTCTCCGAGCTCCGCCTCACGGCGCACTCCGGCACGCACGTCGACGCGCCGGGCCACGTCTTCGACCACTACTACCACGCTGGCTTCGACGTCGACACGCTCGACCTCGCCATCCTCAACGGACCAGCGTTGTTGGTCGATGTTCCTAGGGATAGCAACATAACAGCTAACGTTATGGAATCCTTGCATATTCCCAAAGGAGTTCGGCGAGTTCTCTTTCGAACTTTAAATACAGACA GGAAGCTTATGTGGAAGAAAGAATTTGATACA AGCTATGTTGGTTTCATGAAAGATGGTGCTCAATGGTTGATTGATAACACAGACATTAGACTAGTTGGCGTTGACTACTCGTCAGTCGGAGCGTTTGATGAATGCATTCCTGCTCATTTAGTTTTTCTTGAGAAAAGAGAAGTCATCCTTGTGGAAGCCTTACATTTAGAGCATGTTACCCCAGGAATATATACCTTGCATTGCTTGCCACTAAGGTTACGTGGTTCTGAAGGTTCCCCGGCAAGATGTATTCTCATCAAGTAACATATGCTTATAAGGTTTACATCGACATCTTATATGTGTTGAAATGTTGAATGGTGTTGATGGTTGTCAAGTCAGATGCATCCACCTAGGACATATGTATATGACAAACTATGCATAGTATTTGACACATATATATGATTGTAAAATAAGATCATGTTGCCTTCTAACAGGTTAATGTCTGTGCATCTATCAGCTATAAACTTATATATATTACTA                               ]
[+] EMBL BM421531             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        GAAACCTGGCATATTCCC AAGGAGTTC GCGAGTTCTCTTTCGAACTTTAAATACAGACACGGAAGCTTATGTGGAAGAAAGAATTTGATACACAGCTATGTTGGTTTCATGAAAGATGGTGCTCAATGGTTGATTGATAACACAGACATTAGACTAGTTGGCGTTGACTACTTGTCAGTCGGAGCGTTTGATGAATGCATTCCTGCTCATTTAGTTTTTCTTGAGAAAAGAGAAGTCATCCTTGTGGAAGCCTTAAATTTAGAGCATGTTACCCCAGGAATATATACCTTGCATTGCTTGCCACTAAGGTTACGTGGTTCTGAAGGTTCCCCGGCAAGATGTATTCTCATCAAGTAACATATGCTTATAAGGTTTACATCGACATCTTATATGTGTTGAAATGTTGAATGGTGTTGATGGTTGTCAAGTCAGATGCATCCACCTAGGACCTATGTATATGAC AACTATGCATAGTATTTGACACATATATATGATTGTAAAATAAGATCATGTTGCCTTCTAACAGGTTAATGTCTGTGCATCTATCAGCTATAAACTTATATAaaaa                                   ]
[-] EMBL AU089655             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     GCCACTAAGGTTACGTGGTTTTGAAGGTTCCCCGGCAAGAGGTATTTTTATCAAGTAACAAATGCTTAAAAGGTTTACATTGACATTTTATATGTGTTGAAATGTTGAATGGTGTTGATGGTTGTCAAGTCAGATGCATCCACCTAGGACCCATGTATATGACAAACAATGCATAGTATTTGACACAAATATATGATTGTAAAATAAGATCATGTTGCCTTCTAAaaaa                                                                            ]




>consensus_8657#0
TCAAAGTTGGGAAGCAGAATTAATACACACACTCCATCTCCATGGCACCCACGCCGTTGT
TCCTCCTCCTGCTGCTCACCGGCGTTACGGCGGAGTCGGCGCACCCGGGCTACGCGGAGG
GCGATGGCAGCAGCTGCGACGTGGCGGCGGTAGCGGTGGCAGAGAGGCGAGAGGAGTTCG
ACGGCGGGCGGATCGTGGACATCAGCCACTACTACCGGGAGGAGATGCCGGAGTGGGAGT
CGGCGGACGGCACCGGCGGCGGGTTCCTGCGGCTGGTGCGGTCGATGCGCAACGGCTCCG
ACATCGCCAACTTCTCCGAGCTCCGCCTCACGGCGCACTCCGGCACGCACGTCGACGCGC
CGGGCCACGTCTTCGACCACTACTACCACGCTGGCTTCGACGTCGACACGCTCGACCTCG
CCATCCTCAACGGACCAGCGTTGTTGGTCGATGTTCCTAGGGATAGCAACATAACAGCTA
ACGTTATGGAATCCTTGCATATTCCCAAAGGAGTTCGGCGAGTTCTCTTTCGAACTTTAA
ATACAGACAGGAAGCTTATGTGGAAGAAAGAATTTGATACAAGCTATGTTGGTTTCATGA
AAGATGGTGCTCAATGGTTGATTGATAACACAGACATTAGACTAGTTGGCGTTGACTACT
TGTCAGTCGGAGCGTTTGATGAATGCATTCCTGCTCATTTAGTTTTTCTTGAGAAAAGAG
AAGTCATCCTTGTGGAAGCCTTACATTTAGAGCATGTTACCCCAGGAATATATACCTTGC
ATTGCTTGCCACTAAGGTTACGTGGTTCTGAAGGTTCCCCGGCAAGATGTATTCTCATCA
AGTAACATATGCTTATAAGGTTTACATCGACATCTTATATGTGTTGAAATGTTGAATGGT
GTTGATGGTTGTCAAGTCAGATGCATCCACCTAGGACATATGTATATGACAAACTATGCA
TAGTATTTGACACATATATATGATTGTAAAATAAGATCATGTTGCCTTCTAACAGGTTAA
TGTCTGTGCATCTATCAGCTATAAACTTATATATATTACTATTGTAATTGACTACCAATG
TAACAGTTGGAT

consensusID : consensus_8657#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 411
fasta sequence

                              [GATGTAGATTACTTATGAAGGATGATAGTAAGGTCTATATTGTTGCTTTTCAATGTAGGAAGTCATCCTTGTGGAAGCCTTAAATTTAGAGCATGTTACCCCAGGAATATATACCTTGCATTGCTTGCCACTAAGGTTACGTGGTTCTGAAGGTTCCCCGGCAAGATGTATTCTCATCAAGTGAACATANGCTTATAAGGTTTACATCGACATCTATATGTGTTGAAATGTTGAATGGTGTTGATGGTTGTCAAGTCAGATGCATCCACCTAGGACCTATGTATATGACAAACTATGCATAGTATTTGACACATATATATGATTGTAAAATAAGATCATGTTGCCTTCTAACAGGTTAATGTCTGTGCATCTATCAGCTATAAACTTATATATATTACTATTGTAAAAAAA]

[+] EMBL BM419679             [GATGTAGATTACTTATGAAGGATGATAGTAAGGTCTATATTGTTGCTTTTCAATGTAGGAAGTCATCCTTGTGGAAGCCTTAAATTTAGAGCATGTTACCCCAGGAATATATACCTTGCATTGCTTGCCACTAAGGTTACGTGGTTCTGAAGGTTCCCCGGCAAGATGTATTCTCATCAAGTGAACATANGCTTATAAGGTTTACATCGACATCTATATGTGTTGAAATGTTGAATGGTGTTGATGGTTGTCAAGTCAGATGCATCCACCTAGGACCTATGTATATGACAAACTATGCATAGTATTTGACACATATATATGATTGTAAAATAAGATCATGTTGCCTTCTAACAGGTTAATGTCTGTGCATCTATCAGCTATAAACTTATATATATTACTATTGTAAAAAAA]




>consensus_8657#1
GATGTAGATTACTTATGAAGGATGATAGTAAGGTCTATATTGTTGCTTTTCAATGTAGGA
AGTCATCCTTGTGGAAGCCTTAAATTTAGAGCATGTTACCCCAGGAATATATACCTTGCA
TTGCTTGCCACTAAGGTTACGTGGTTCTGAAGGTTCCCCGGCAAGATGTATTCTCATCAA
GTGAACATANGCTTATAAGGTTTACATCGACATCTATATGTGTTGAAATGTTGAATGGTG
TTGATGGTTGTCAAGTCAGATGCATCCACCTAGGACCTATGTATATGACAAACTATGCAT
AGTATTTGACACATATATATGATTGTAAAATAAGATCATGTTGCCTTCTAACAGGTTAAT
GTCTGTGCATCTATCAGCTATAAACTTATATATATTACTATTGTAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8657#0      TCAAAGTTGGGAAGCAGAATTAATACACACACTCCATCTCCATGGCACCCACGCCGTTGT 60
consensus_8657#1      ------------------------------------------------------------
                                                                                  

consensus_8657#0      TCCTCCTCCTGCTGCTCACCGGCGTTACGGCGGAGTCGGCGCACCCGGGCTACGCGGAGG 120
consensus_8657#1      ------------------------------------------------------------
                                                                                  

consensus_8657#0      GCGATGGCAGCAGCTGCGACGTGGCGGCGGTAGCGGTGGCAGAGAGGCGAGAGGAGTTCG 180
consensus_8657#1      ------------------------------------------------------------
                                                                                  

consensus_8657#0      ACGGCGGGCGGATCGTGGACATCAGCCACTACTACCGGGAGGAGATGCCGGAGTGGGAGT 240
consensus_8657#1      ------------------------------------------------------------
                                                                                  

consensus_8657#0      CGGCGGACGGCACCGGCGGCGGGTTCCTGCGGCTGGTGCGGTCGATGCGCAACGGCTCCG 300
consensus_8657#1      ------------------------------------------------------------
                                                                                  

consensus_8657#0      ACATCGCCAACTTCTCCGAGCTCCGCCTCACGGCGCACTCCGGCACGCACGTCGACGCGC 360
consensus_8657#1      ------------------------------------------------------------
                                                                                  

consensus_8657#0      CGGGCCACGTCTTCGACCACTACTACCACGCTGGCTTCGACGTCGACACGCTCGACCTCG 420
consensus_8657#1      ------------------------------------------------------------
                                                                                  

consensus_8657#0      CCATCCTCAACGGACCAGCGTTGTTGGTCGATGTTCCTAGGGATAGCAACATAACAGCTA 480
consensus_8657#1      ------------------------------------------------------------
                                                                                  

consensus_8657#0      ACGTTATGGAATCCTTGCATATTCCCAAAGGAGTTCGGCGAGTTCTCTTTCGAACTTTAA 540
consensus_8657#1      ------------------------------------------------------------
                                                                                  

consensus_8657#0      ATACAGACAGGAAGCTTATGTGGAAGAAAGAATTTGATACAAGCTATGTTGGTTTCATGA 600
consensus_8657#1      ------------------------------------------------------------
                                                                                  

consensus_8657#0      AAGATGGTGCTCAATGGTTGATTGATAACACAGACATTAGACTAGTTGGCGTTGACTACT 660
consensus_8657#1      -----------------------------------------------GATGTAGATTACT 13
                                                                     *  ** ** ****

consensus_8657#0      TGTCAGTCGGAGCGTTTGATGAATGCATTCCTGCTCATTTAGTTTTTCTTGAGAAAAGAG 720
consensus_8657#1      TAT-----GAAG-----GATGA---TAGTAAGGTCTATATTGTTGCTTTTCAATGTAG-G 59
                      * *     * **     *****    * *   *   ** * ***  * ** *    ** *

consensus_8657#0      AAGTCATCCTTGTGGAAGCCTTACATTTAGAGCATGTTACCCCAGGAATATATACCTTGC 780
consensus_8657#1      AAGTCATCCTTGTGGAAGCCTTAAATTTAGAGCATGTTACCCCAGGAATATATACCTTGC 119
                      *********************** ************************************

consensus_8657#0      ATTGCTTGCCACTAAGGTTACGTGGTTCTGAAGGTTCCCCGGCAAGATGTATTCTCATCA 840
consensus_8657#1      ATTGCTTGCCACTAAGGTTACGTGGTTCTGAAGGTTCCCCGGCAAGATGTATTCTCATCA 179
                      ************************************************************

consensus_8657#0      AGT-AACATATGCTTATAAGGTTTACATCGACATCTTATATGTGTTGAAATGTTGAATGG 899
consensus_8657#1      AGTGAACATANGCTTATAAGGTTTACATCGACATCT-ATATGTGTTGAAATGTTGAATGG 238
                      *** ****** ************************* ***********************

consensus_8657#0      TGTTGATGGTTGTCAAGTCAGATGCATCCACCTAGGACATATGTATATGACAAACTATGC 959
consensus_8657#1      TGTTGATGGTTGTCAAGTCAGATGCATCCACCTAGGACCTATGTATATGACAAACTATGC 298
                      ************************************** *********************

consensus_8657#0      ATAGTATTTGACACATATATATGATTGTAAAATAAGATCATGTTGCCTTCTAACAGGTTA 1019
consensus_8657#1      ATAGTATTTGACACATATATATGATTGTAAAATAAGATCATGTTGCCTTCTAACAGGTTA 358
                      ************************************************************

consensus_8657#0      ATGTCTGTGCATCTATCAGCTATAAACTTATATATATTACTATTGTAATTGACTACCAAT 1079
consensus_8657#1      ATGTCTGTGCATCTATCAGCTATAAACTTATATATATTACTATTGTAAAAAAA------- 411
                      ************************************************   *        

consensus_8657#0      GTAACAGTTGGAT 1092
consensus_8657#1      -------------