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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8669#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1343 fasta sequence
[TGCTGGTGGTGGTACAGATATTATGCATCCTTTGAATGAGGCAATGGCATCATTGTCAAGTGCTCATGATGTGCTTCCACAAATCTTTCTTATGACTGATGGATCAGTTGATGATGAACATAATATATGCCAAACTGTGAAAACGGAGCTCATCAGCAGAGGATCTAAATCTCCTCGGATTTCTACTTTTGGACTAGGTTTGTATTGCAACCACTATTTCTTGCGCATGCTGGCATCAATAGGCAGGGGGCATTATGATGCTGCATTTGAGACAGGATCAATTGAGAGTCAGGTACTTAGGTGGTTCAGGAAAGCATCGAGTACAATAGTTGCAAACATCTCCATTGATGCTACAGCACATCTTGATGAATTTGAAATCGATTCTGAATACATTCCAGACATTTCAGCAAAAAGTCCTTTATGTATATCTGGGAAATACCAAGGCAAGTTCCCAGATATGGTTACAGCTAAAGGTTACTTGGCTGACATGAGAGAGATCTCGATTGAACTTAAGGTGCAGCATATAAAGGATATACCCCTTGACAAAGTTTTGGCGGCACAGCAGATTGGCCTTCTCACAGCGAAGGCATGGCTTTCTTCTGACAAGCAACTGGAGAGAAAGGTGGTGAAACTAAGCATTCAAAATAGCATTCCTTCAGAGTACACGAGCATGGTCCTACTTCAAACATTGGAGAAGGTAGATGCAGCACAAAAGGTCAAGCAGAAACTGAAAGGTCACAAGGGCCCCGACGAACCTCGACGGATCCCGCTCCAATGCCTCAAGCTCGGGTTCGGCGACCGGGCCGCCACCAGGGAGAACCTCGTCACGGGTTTCGGCGACGTGAAGCCGCTGGAGACGTTCGAGATCCTCAACAAGGCCGCCGGCTGCTGCAGCCGCCTCGCCGACTGCCTCTGCTGCATGTGCTGCATCAAGGCCTGCAACAAGATGAACGACCAGTGCGCCATCGTGATGACGCAGGTCTGCGCGGCGTTCGCCTGCCTCGGCTGCTACGAGTGCTGCGCCGAGCTGTGTTCAGGGTCCGACTCGTAGCCGTCTGGTTTTGTGTTTGTAATTTGGGGAGAGAGGAGAGTATTCGAGTGTACATAGATAGAGTTTGCGAAGAAGAAAAAAAAGCCCGTGCATCTCCATACTGTACAGCTTGATCAAGGATGGTCACTTGGTCAGGCGATCAGGTCGGTCGTTGGTTGTACAATTTACCCATGAAAAAGCCATCAGGTTTCAGGTTTGGACCTCTCCAAAGTCCAAACGTTCTGGTGCTGGTTTAGAGACATTTGTGGGTTATTTGGTTTTGAGGAATCAAGCCATTTATGGGATGATGGGG]
[+] EMBL AK111336 [TGCTGGTGGTGGTACAGATATTATGCATCCTTTGAATGAGGCAATGGCATCATTGTCAAGTGCTCATGATGTGCTTCCACAAATCTTTCTTATGACTGATGGATCAGTTGATGATGAACATAATATATGCCAAACTGTGAAAACGGAGCTCATCAGCAGAGGATCTAAATCTCCTCGGATTTCTACTTTTGGACTAGGTTTGTATTGCAACCACTATTTCTTGCGCATGCTGGCATCAATAGGCAGGGGGCATTATGATGCTGCATTTGAGACAGGATCAATTGAGAGTCAGGTACTTAGGTGGTTCAGGAAAGCATCGAGTACAATAGTTGCAAACATCTCCATTGATGCTACAGCACATCTTGATGAATTTGAAATCGATTCTGAATACATTCCAGACATTTCAGCAAAAAGTCCTTTATGTATATCTGGGAAATACCAAGGCAAGTTCCCAGATATGGTTACAGCTAAAGGTTACTTGGCTGACATGAGAGAGATCTCGATTGAACTTAAGGTGCAGCATATAAAGGATATACCCCTTGACAAAGTTTTGGCGGCACAGCAGATTGGCCTTCTCACAGCGAAGGCATGGCTTTCTTCTGACAAGCAACTGGAGAGAAAGGTGGTGAAACTAAGCATTCAAAATAGCATTCCTTCAGAGTACACGAGCATGGTCCTACTTCAAACATTGGAGAAGGTAGATGCAGCACAAAAGGTCAAGCAGAAACTGAAAGGTCACAAGGGCCCCGACGAACCTCGACGGATCCCGCTCCAATGCCTCAAGCTCGGGTTCGGCGACCGGGCCGCCACCAGGGAGAACCTCGTCACGGGTTTCGGCGACGTGAAGCCGCTGGAGACGTTCGAGATCCTCAACAAGGCCGCCGGCTGCTGCAGCCGCCTCGCCGACTGCCTCTGCTGCATGTGCTGCATCAAGGCCTGCAACAAGATGAACGACCAGTGCGCCATCGTGATGACGCAGGTCTGCGCGGCGTTCGCCTGCCTCGGCTGCTACGAGTGCTGCGCCGAGCTGTGTTCAGGGTCCGACTCGTAGCCGTCTGGTTTTGTGTTTGTAATTTGGGGAGAGAGGAGAGTATTCGAGTGTACATAGATAGAGTTTGCGAAGAAGAAAAAAAAGCCCGTGCATCTCCATACTGTACAGCTTGATCAAGGATGGTCACTTGGTCAGGCGATCAGGTCGGTCGTTGGTTGTACAATTTACCCATGAAAAAGCCATCAGGTTTCAGGTTTGGACCTCTCCAAAGTCCAAACGTTCTGGTGCTGGTTTAGAGACATTTGTGGGTTATTTGGTTTTGAGGAATCAAGCCATTTATGGGATGATGGGG]
[+] EMBL OS0847A [ CGAGTACAATAGTTGCAAACATCTCCATTGATGCTACAGCACATCTTGATGAATTTGAAATCGATTCTGAATACATTCCAGACATTTCAGCAAAAAGTCCTTTATGTATATCTGGGAAATACCAAGGCAAGTTCCCAGATATGGTTACAGCTAAAGGTTACTTGGCTGACATGAGAGAGATCTCGATTGAACTTAAGGTGCAGCATATAAAGGATATACCCCTTGACAAAGTTTTGGCGGCACAGCAGATTGGCCTTCTCACAGCGAAGGCATGGCTTTCTTCTGACAAGCAACTGGAGAGAAAGGTGGTGA ]
[+] EMBL AU182584 [ ACGGGTTTCGGCGACGTGAAGCCGCTGGAGACGTTCGAGATCCTCAACAAGGCCGCCGGCTGCTGCAGCCGCCTCGCCGACTGCCTCTGCTGCATGTGCTGCATCAAGGCCTGCAACAAGATGAACGACCAGTGCGCCATCGTGATGACGCAGGTCTGCGCGGCGTTCGCCTGCCTCGGCTGCTACGAGTGCTGCGCCGAGCTGTGTTCAGGGTCCGACTCGTAGCCGTCTGGTTTTGTGTTTGTAATTTGGGGTGAGAGGAGAGTATTCGAGTGTACATAGATAGAGTTTGCGAAGAAGAAAAAAAAGCCCGTGCATCTCCATACTGTACAGCTTGATCAAGGATGGTCACTTGGTCAGGTGATCAGGTCGGTCGTTGGTTGTACAATTTACCCATGAAAAAGCCATCAGGTTTCAGGTTaaaa ]
consensusID : consensus_8669#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 378 fasta sequence
[GGCCGCCACCAGGGAGAACCTCGTCACGGGTTTCGGCGACGTGAAGCCGCTGGAGACGTTCGAGATCCTCAACAAGGCCGCCGGCTGCTGCAGCCGCCTCGCCGACTGCCTCTGCTGCATGTGCTGCATCAAGGCCTGCAACAAGATGAACGACCAGTGCGCCATCGTGATGACGCAGGTCTGCGCGGCGTTCGCCTGCCTCGGCTGCTACNAGTGCTGCGCCGAGCTGTGTTCAGGGTCCGACTCGTAGCCGTCTGGTTTTGTGTTTGTAATTTGGGGAGAGAGGAGAGTATTCGAGTGTACGTTAAGATGGAAGTAAAATGTAGAGAAAATAGAACTGCCGGGGCCGCTGGGCTGTCTCCAAAAAAAAAAAAAAAA]
[+] EMBL CA759063 [GGCCGCCACCAGGGAGAACCTCGTCACGGGTTTCGGCGACGTGAAGCCGCTGGAGACGTTCGAGATCCTCAACAAGGCCGCCGGCTGCTGCAGCCGCCTCGCCGACTGCCTCTGCTGCATGTGCTGCATCAAGGCCTGCAACAAGATGAACGACCAGTGCGCCATCGTGATGACGCAGGTCTGCGCGGCGTTCGCCTGCCTCGGCTGCTACNAGTGCTGCGCCGAGCTGTGTTCAGGGTCCGACTCGTAGCCGTCTGGTTTTGTGTTTGTAATTTGGGGAGAGAGGAGAGTATTCGAGTGTACGTTAAGATGGAAGTAAAATGTAGAGAAAATAGAACTGCCGGGGCCGCTGGGCTGTCTCCAAAAAAAAAAAAAAAA]
consensusID : consensus_8669#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 232 fasta sequence
[TANCCGTCTGGTTTTGTGNTTGTAATTTGGGGAGAGAGGAGAGTATTCGAGTGTACATAGATAGAGTTTGCGAAGAAGAAAAAAAAGCCCGTGCATCTCCATACTGTACAGCTTGATCAAGGATGGTCACTTGGTCAGGTGATCAGGTCGGTCGTTGGTTGTACAATTTACCCATGAAAAAGCCATCAGGTTTCAGGTTTGGNCCTCTCCAAAGTCCAAAAAAAAAAAAAAA]
[+] EMBL C98159 [TANCCGTCTGGTTTTGTGNTTGTAATTTGGGGAGAGAGGAGAGTATTCGAGTGTACATAGATAGAGTTTGCGAAGAAGAAAAAAAAGCCCGTGCATCTCCATACTGTACAGCTTGATCAAGGATGGTCACTTGGTCAGGTGATCAGGTCGGTCGTTGGTTGTACAATTTACCCATGAAAAAGCCATCAGGTTTCAGGTTTGGNCCTCTCCAAAGTCCAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8669#0 TGCTGGTGGTGGTACAGATATTATGCATCCTTTGAATGAGGCAATGGCATCATTGTCAAG 60
consensus_8669#2 ------------------------------------------------------------
consensus_8669#1 ------------------------------------------------------------
consensus_8669#0 TGCTCATGATGTGCTTCCACAAATCTTTCTTATGACTGATGGATCAGTTGATGATGAACA 120
consensus_8669#2 ------------------------------------------------------------
consensus_8669#1 ------------------------------------------------------------
consensus_8669#0 TAATATATGCCAAACTGTGAAAACGGAGCTCATCAGCAGAGGATCTAAATCTCCTCGGAT 180
consensus_8669#2 ------------------------------------------------------------
consensus_8669#1 ------------------------------------------------------------
consensus_8669#0 TTCTACTTTTGGACTAGGTTTGTATTGCAACCACTATTTCTTGCGCATGCTGGCATCAAT 240
consensus_8669#2 ------------------------------------------------------------
consensus_8669#1 ------------------------------------------------------------
consensus_8669#0 AGGCAGGGGGCATTATGATGCTGCATTTGAGACAGGATCAATTGAGAGTCAGGTACTTAG 300
consensus_8669#2 ------------------------------------------------------------
consensus_8669#1 ------------------------------------------------------------
consensus_8669#0 GTGGTTCAGGAAAGCATCGAGTACAATAGTTGCAAACATCTCCATTGATGCTACAGCACA 360
consensus_8669#2 ------------------------------------------------------------
consensus_8669#1 ------------------------------------------------------------
consensus_8669#0 TCTTGATGAATTTGAAATCGATTCTGAATACATTCCAGACATTTCAGCAAAAAGTCCTTT 420
consensus_8669#2 ------------------------------------------------------------
consensus_8669#1 ------------------------------------------------------------
consensus_8669#0 ATGTATATCTGGGAAATACCAAGGCAAGTTCCCAGATATGGTTACAGCTAAAGGTTACTT 480
consensus_8669#2 ------------------------------------------------------------
consensus_8669#1 ------------------------------------------------------------
consensus_8669#0 GGCTGACATGAGAGAGATCTCGATTGAACTTAAGGTGCAGCATATAAAGGATATACCCCT 540
consensus_8669#2 ------------------------------------------------------------
consensus_8669#1 ------------------------------------------------------------
consensus_8669#0 TGACAAAGTTTTGGCGGCACAGCAGATTGGCCTTCTCACAGCGAAGGCATGGCTTTCTTC 600
consensus_8669#2 ------------------------------------------------------------
consensus_8669#1 ------------------------------------------------------------
consensus_8669#0 TGACAAGCAACTGGAGAGAAAGGTGGTGAAACTAAGCATTCAAAATAGCATTCCTTCAGA 660
consensus_8669#2 ------------------------------------------------------------
consensus_8669#1 ------------------------------------------------------------
consensus_8669#0 GTACACGAGCATGGTCCTACTTCAAACATTGGAGAAGGTAGATGCAGCACAAAAGGTCAA 720
consensus_8669#2 ------------------------------------------------------------
consensus_8669#1 ------------------------------------------------------------
consensus_8669#0 GCAGAAACTGAAAGGTCACAAGGGCCCCGACGAACCTCGACGGATCCCGCTCCAATGCCT 780
consensus_8669#2 ------------------------------------------------------------
consensus_8669#1 ------------------------------------------------------------
consensus_8669#0 CAAGCTCGGGTTCGGCGACCGGGCCGCCACCAGGGAGAACCTCGTCACGGGTTTCGGCGA 840
consensus_8669#2 ------------------------------------------------------------
consensus_8669#1 ------------------------------------------------------------
consensus_8669#0 CGTGAAGCCGCTGGAGACGTTCGAGATCCTCAACAAGGCCGCCGGCTGCTGCAGCCGCCT 900
consensus_8669#2 ------------------------------------------------------------
consensus_8669#1 ------------------------------------------------------------
consensus_8669#0 CGCCGACTGCCTCTGCTGCATGTGCTGCATCAAGGCCTGCAACAAGATGAACGACCAGTG 960
consensus_8669#2 ------------------------------------------------------------
consensus_8669#1 --------------------------------------------------GGCCGCCACC 10
consensus_8669#0 CGCCATCGTGATGACGCAGGTCTGCGCGGCGTTCGCCTGCCTCGGCTGCTACGAGTGCTG 1020
consensus_8669#2 ------------------------------------------------------------
consensus_8669#1 AGGGAGAACCTCGTCACGGGTTTCGGCGACGTGAAGCCGCTGGAGACGTTCGAGATCCTC 70
consensus_8669#0 CGCCGAGCTGTGTTCAGGGTCCGACTCGTAGCCGTCTGGTTTTG-TGTTTGTAATTTGGG 1079
consensus_8669#2 ----------------------------TANCCGTCTGGTTTTG-TGNTTGTAATTTGGG 31
consensus_8669#1 AACAAGGCCGCCGGCTGCTGCAGCCGCCTCGCCGACTGCCTCTGCTGCATGTGCTGCATC 130
* *** *** * ** ** *** *
consensus_8669#0 GAGAGAGGAGAGTATTCGAGTGTACATAG----ATAGAGTTTGCGAAGAAGAAAAAAAAG 1135
consensus_8669#2 GAGAGAGGAGAGTATTCGAGTGTACATAG----ATAGAGTTTGCGAAGAAGAAAAAAAAG 87
consensus_8669#1 AAGGCCTGCAACAAGATGAACGACCAGTGCGCCATCGTGATGACGCAGGTCTGCGCGGCG 190
** * * * ** * ** * ** * * * ** ** *
consensus_8669#0 CCCGTGCATCTCCA-TACTGTACAGCTTGATCAAGGATGGTCACTTGGTCAGGCGATCAG 1194
consensus_8669#2 CCCGTGCATCTCCA-TACTGTACAGCTTGATCAAGGATGGTCACTTGGTCAGGTGATCAG 146
consensus_8669#1 TTCGCCTGCCTCGGCTGCTACNAGTGCTGCGCCGAGCTGTGTTCAGGGTCCGACTCGTAG 250
** *** * ** ** * * ** * **** * **
consensus_8669#0 --GTCGGTCGTTGGTTGTACAATTTACCCATGAAAAAGC-CATCAGGTTTCAGGTTTGGA 1251
consensus_8669#2 --GTCGGTCGTTGGTTGTACAATTTACCCATGAAAAAGC-CATCAGGTTTCAGGTTTGGN 203
consensus_8669#1 CCGTCTGGTTTTGTGTTTGTAATTTGGGGAGAGAGGAGAGTATTCGAGTGTACGTTAAGA 310
*** * *** * * ***** * * ** ** * * * *** *
consensus_8669#0 CCTCTCCAAAGTCCAAACGTTCTGGTGCTGGTTTAGAGACATTTGTGGGTTATTTGGTTT 1311
consensus_8669#2 CCTCTCCAAAGTCCAAAAAAAAAAAAAAA------------------------------- 232
consensus_8669#1 TGGAAGTAAAATGTAGAGAAAATAGAACTGCCGGGGCCGCTGGGCTGTCTCCAAAAAAAA 370
*** * * *
consensus_8669#0 TGAGGAATCAAGCCATTTATGGGATGATGGGG 1343
consensus_8669#2 --------------------------------
consensus_8669#1 AAAAAAAA------------------------ 378
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||