These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8677#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 842 fasta sequence [GAGCAACACACCAAGAAGGCCAGAGAGATTCAGAGAACTACACCGAGAAGGCGAGATTGTTTGCGTGGTTGGTAATTTGGCCGGCCTTGATCGATCGAGCGGAGAAGAGAAGAAAAAGATGGCGGGGAGCGGTGTCCTGGAGGTGCATCTCGTCGACGCCAAGGGCCTCACCGGCAACGACTTCCTAGGTGAGATAGGCAACATACACCCGTACGTGGTGGTGCAGTACCGGAGCCAGGAGCGCAAGAGCAGCGTCGCCAGAGATCAAGGGAAGAACCCGAGCTGGAACGAGGTGTTCAAGTTCCAGATCAACTCCACGGCGGCGACCGGGCAGCACAAGCTCTTTCTGCGGCTCATGGACCACGACACCTTCTCACGGGACGACTTCCTCGGCGAAGCAACGATCAACGTGACTGACCTGATCAGCTTAGGCATGGAGCACGGCACATGGGAGATGAGCGAATCCAAGCACCGGGTCGTCCTCGCGGACAAAACATACCACGGCG-AGATCAGAGTCAGCCTCACGTTCACGGCTTCTGCAAAGGCTCAAGACCACGCAGAACAGGTTGGAGGATGGGCGCACAGCTTTCGTCAGTAGAAAGATTGTGAACTTCAAGTCTATAATCAGTTGGGGCCTGTGGGAGGTTTAGATAAGTATACTATAGTACTAGCAAGGTAGGATTTTGTGAGTAACAACGGCATCTAATGCCCAAGATTGATGTGGTTCGAAGTGTATGTATGCTGCCTTTTTTTTTTCTATACTAGATGTATATTCAGAACATTGTAGAGTCATGAACCTGTTAATGGATGTGAATTATGATACTAAAAAAAACAAAAAAAAA] [+] EMBL U95135 [GAGCAACACACCAAGAAGGCCAGAGAGATTCAGAGAACTACACCGAGAAGGCGAGATTGTTTGCGTGGTTGGTAATTTGGCCGGCCTTGATCGATCGAGCGGAGAAGAGAAGAAAAAGATGGCGGGGAGCGGTGTCCTGGAGGTGCATCTCGTCGACGCCAAGGGCCTCACCGGCAACGACTTCCTAGGTGAGATAGGCAACATACACCCGTACGTGGTGGTGCAGTACCGGAGCCAGGAGCGCAAGAGCAGCGTCGCCAGAGATCAAGGGAAGAACCCGAGCTGGAACGAGGTGTTCAAGTTCCAGATCAACTCCACGGCGGCGACCGGGCAGCACAAGCTCTTTCTGCGGCTCATGGACCACGACACCTTCTCACGGGACGACTTCCTCGGCGAAGCAACGATCAACGTGACTGACCTGATCAGCTTAGGCATGGAGCACGGCACATGGGAGATGAGCGAATCCAAGCACCGGGTCGTCCTCGCGGACAAAACATACCACGGCG AGATCAGAGTCAGCCTCACGTTCACGGCTTCTGCAAAGGCTCAAGACCACGCAGAACAGGTTGGAGGATGGGCGCACAGCTTTCGTCAGTAGAAAGATTGTGAACTTCAAGTCTATAATCAGTTGGGGCCTGTGGGAGGTTTAGATAAGTATACTATAGTACTAGCAAGGTAGGATTTTGTGAGTAACAACGGCATCTAATGCCCAAGATTGATGTGGTTCGAAGTGTATGTATGCTGCCTTTTTTTTTTCTATACTAGATGTATATTCAGAACATTGTAGAGTCATGAACCTGTTAATGGATGTGAATTATGATACTAAAAAAAA ] [+] EMBL U95136 [ AGAAGAAAAAGATGGCGGGGAGCGGTGTCCTGGAGGTGCATCTCGTCGACGCCAAGGGCCTCACCGGCAACGACTTCC TAGGCAAGATAGACCCGTACGTGGTGGTGCAGTACCGGAGCCAGGAGCGCAAGAGCAGCGTCGCCAGAGATCAAGGGAAGAACCCGAGCTGGAACGAGGTGTTCAAGTTCCAGATCAACTCCACGGCGGCGACCGGGCAGCACAAGCTCTTTCTGCGGCTCATGGACCACGACACCTTCTCACGGGACGACTTCCTCGGCGAAGCAACGATCAACGTGACTGACCTGATCAGCTTAGGCATGGAGCACGGCACATGGGAGATGAGCGAATCCAAGCACCGGGTCGTCCTCGCGGACAAAACATACCACGGCG AGATCAGAGTCAGCCTCACGTTCACGGCTTCTGCAAAGGCTCAAGACCACGCAGAACAGGTTGGAGGATGGGCGCACAGCTTTCGTCAGTAGAAAGATTGTGAACTTCAAGTCTATAATCAGTTGGGGCCTGTGGGAGGTTTAGATAAGTATACTATAGTACTAGCAAGGTAGGATTTTGTGAGTAACAACGGCATCTAATGCCCAAGATTGATGTGGTTCGAAGTGTATGTATGCTGCCTTTTTTTTTTCTATACTAGATGTATATTCAGAACATTGTAGAGTCATGAACCTGTTAATGGATGTGAATTATGATACTACTTCAACCAAAAAAAAA] [+] EMBL C74955 [ AGAGCAGCGTCGCCAGAGATCAAGGGAAGAACCCGAGCTGGAACGAGGTGTTCAAGTTCCAGATCAACTCCACGGCGGCGACCGGGCAGCACAAGCTCTTTCTGCGGCTCATGGACCACGACACCTTCTCACGGGACGACTTCCTCGGCGAA NAACGATCAACGTGACTGACCTGATCAGCTTAGGCATGGAGCACGGCACATGGGAGATGAGCGAATCCAAGCACCGGGTCGTCCTCGCGGACAAAACATACCACGGCGAAGATCAGAGTCAGCCTCACGTTCACGGCTTCTGCAAAGGCTCca ] consensusID : consensus_8677#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 520 fasta sequence [CGTCCTCGCGGACAAAACATACCACGGGNAGATCAGAGTCAGCCTCACGTTCACGGCTTCTGCAAAGGTAAACAAATCACCANACGCACGANTGAATTATTGATTAATCATGTACCGCCCCGGTGGCCTTCCATGGGTCTCTCCTGATTGGCTGGGATCTGAATGTGATTCGATGTTGATGTCCAATGACAGGCTCAAGACCACGCAGAACAGGTTGGAGGATGGGCGCACAGCTTTCGTCAGTAGAAAGATTGTGAACTTCAAGTCTATAATCAGTTGGGGCCTGTGGGAGGTTTAGATAAGTATACTATAGTACTAGCAAGGTAGGATTTTGTGAGTAACAACGGCATCTAATGCCCAAGATTGATGTGGTTCGAAGTGTATGTATGCTGCCTTTTTTTTTTCTATACTAGATGTATATTCAGAACATTGTAGAGTCATGAACCTGTTAATGGATGTGAATTATGATACTACTTCAACCTCTAAAAAAAAAAAAAAAAAAAACTCGAGACTAGTTCTC] [-] EMBL AW155579 [CGTCCTCGCGGACAAAACATACCACGGGNAGATCAGAGTCAGCCTCACGTTCACGGCTTCTGCAAAGGTAAACAAATCACCANACGCACGANTGAATTATTGATTAATCATGTACCGCCCCGGTGGCCTTCCATGGGTCTCTCCTGATTGGCTGGGATCTGAATGTGATTCGATGTTGATGTCCAATGACAGGCTCAAGACCACGCAGAACAGGTTGGAGGATGGGCGCACAGCTTTCGTCAGTAGAAAGATTGTGAACTTCAAGTCTATAATCAGTTGGGGCCTGTGGGAGGTTTAGATAAGTATACTATAGTACTAGCAAGGTAGGATTTTGTGAGTAACAACGGCATCTAATGCCCAAGATTGATGTGGTTCGAAGTGTATGTATGCTGCCTTTTTTTTTTCTATACTAGATGTATATTCAGAACATTGTAGAGTCATGAACCTGTTAATGGATGTGAATTATGATACTACTTCAACCTCTAAAAAAAAAAAAAAAAAAAACTCGAGACTAGTTCTC] consensusID : consensus_8677#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 261 fasta sequence [GGAACGAGGTGTTCAAGTTCCAGATCAACTCCACGGCGGCGACCGGGCAGCACAAGCTCTTTCTGCGGCTCATGGACCACGACACCTTCTCACGGGACGACTTCCTCGGCGAAGCAACGTGAGTGCCATTATATGCTCTCACCAAAACAAAAAGCCAACAACCATGGCAGCTAGCTTAGTCATAGCAAACGCTAAACACTAAAGTAATTTTCCAGTTCTTAAAGGAGATATTAAGGAGGCACCAAATTTACACTAAAACTT] [+] EMBL BE230432 [GGAACGAGGTGTTCAAGTTCCAGATCAACTCCACGGCGGCGACCGGGCAGCACAAGCTCTTTCTGCGGCTCATGGACCACGACACCTTCTCACGGGACGACTTCCTCGGCGAAGCAACGTGAGTGCCATTATATGCTCTCACCAAAACAAAAAGCCAACAACCATGGCAGCTAGCTTAGTCATAGCAAACGCTAAACACTAAAGTAATTTTCCAGTTCTTAAAGGAGATATTAAGGAGGCACCAAATTTACACTAAAACTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8677#0 GAGCAACACACCAAGAAGGCCAGAGAGATTCAGAGAACTACACCGAGAAGGCGAGATTGT 60 consensus_8677#1 ------------------------------------------------------------ consensus_8677#2 ------------------------------------------------------------ consensus_8677#0 TTGCGTGGTTGGTAATTTGGCCGGCCTTGATCGATCGAGCGGAGAAGAGAAGAAAAAGAT 120 consensus_8677#1 ------------------------------------------------------------ consensus_8677#2 ------------------------------------------------------------ consensus_8677#0 GGCGGGGAGCGGTGTCCTGGAGGTGCATCTCGTCGACGCCAAGGGCCTCACCGGCAACGA 180 consensus_8677#1 ------------------------------------------------------------ consensus_8677#2 ------------------------------------------------------------ consensus_8677#0 CTTCCTAGGTGAGATAGGCAACATACACCCGTACGTGGTGGTGCAGTACCGGAGCCAGGA 240 consensus_8677#1 ------------------------------------------------------------ consensus_8677#2 ------------------------------------------------------------ consensus_8677#0 GCGCAAGAGCAGCGTCGCCAGAGATCAAGGGAAGAACCCGAGCTGGAACGAGGTGTTCAA 300 consensus_8677#1 ------------------------------------------------------------ consensus_8677#2 ------------------------------------------------------------ consensus_8677#0 GTTCCAGATCAACTCCACGGCGGCGACCGGGCAGCACAAGCTCTTTCTGCGGCTCATGGA 360 consensus_8677#1 -------------------------------------------------CGTCCTCGCGG 11 consensus_8677#2 ------------------------------------------------------------ consensus_8677#0 CCACGACACCTTCTCACGGGACGACTTCCTCGGCGAAGCAACGATCAACGTGACTGACCT 420 consensus_8677#1 ACAAAACA---TACCACGGGNAGA--TCAGAGTCAGCCTCACGTTCACGGCTTCTGCAAA 66 consensus_8677#2 --------------------------------GGAACGAGGTGTTCA-AGTTCCAGATCA 27 * *** * * * consensus_8677#0 GATCAGCTTAGGCATGGAGCACGGCACATGGGAGATGAGCGAATCCAAGCACCG----GG 476 consensus_8677#1 GGTAAACA-AATCACCANACGCA-CGANTGAATTATTGATTAATC-ATGTACCGCCCCGG 123 consensus_8677#2 ACTCCACGGCGGCGACCGG-GCAGCACAAGCTCTTTCTGCGGCTC-ATGGACCAC---GA 82 * * * * * * * ** * * *** * consensus_8677#0 TCGTCCTC-GCGGACAAAACATACCACGGCGAG--ATCAGAGTCAGCCTC-ACGTTCACG 532 consensus_8677#1 TGGCCTTCCATGGGTCTCTCCTGATTGGCTGGG--ATCTGAATGTGATTCGATGTTGATG 181 consensus_8677#2 CACCTTCTCACGGGACGA-CTTCCTCGGCGAAGCAACGTGAGTGCCATTATATGCTCTCA 141 ** * * * * * ** * * * * * consensus_8677#0 GCTTCTGCAAAGGCTCAAGACCACGCAGAACAGGTTGGAGGATGGGCGCACAGCTTTCGT 592 consensus_8677#1 TCCAATG-ACAGGCTCAAGACCACGCAGAACAGGTTGGAGGATGGGCGCACAGCTTTCGT 240 consensus_8677#2 CCAAAACAAAAAGCCAACAACCATGGCAGCTAGCTTAGT---------CATAGCAAACGC 192 * * * ** * **** * ** ** * ** *** ** consensus_8677#0 CAGTAGAAAGATTGTGAACTTCAAGTCTATAATCAGTTGGGGCCTGTGGGAGGTTTAGAT 652 consensus_8677#1 CAGTAGAAAGATTGTGAACTTCAAGTCTATAATCAGTTGGGGCCTGTGGGAGGTTTAGAT 300 consensus_8677#2 TA--AACACTAAAGTAATTTTCCAGTTCTTAA--AG--GAGATATTAAGGAGGCAC---C 243 * * * * ** * *** *** *** ** * * * ***** consensus_8677#0 AAGTATACTATAGTACTAGCAAGGTAGGATTTTGTGAGTAACAACGGCATCTAATGCCCA 712 consensus_8677#1 AAGTATACTATAGTACTAGCAAGGTAGGATTTTGTGAGTAACAACGGCATCTAATGCCCA 360 consensus_8677#2 AAATTTACACTAAAACTT------------------------------------------ 261 ** * *** ** *** consensus_8677#0 AGATTGATGTGGTTCGAAGTGTATGTATGCTGCCTTTTTTTTTTCTATACTAGATGTATA 772 consensus_8677#1 AGATTGATGTGGTTCGAAGTGTATGTATGCTGCCTTTTTTTTTTCTATACTAGATGTATA 420 consensus_8677#2 ------------------------------------------------------------ consensus_8677#0 TTCAGAACATTGTAGAGTCATGAACCTGTTAATGGATGTGAATTATGATACTA------- 825 consensus_8677#1 TTCAGAACATTGTAGAGTCATGAACCTGTTAATGGATGTGAATTATGATACTACTTCAAC 480 consensus_8677#2 ------------------------------------------------------------ consensus_8677#0 ----AAAAAAACAAAAAAAAA------------------- 842 consensus_8677#1 CTCTAAAAAAAAAAAAAAAAAAAACTCGAGACTAGTTCTC 520 consensus_8677#2 ---------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||