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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_868#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1546 fasta sequence
[CTCCTCTCCTCCTTGTCCGTCTCGATCTAGTCGGATCCGGAGCGGCGGTGTTTGAGGAGGCCGAGGCGGCGGCGTGGATCCAGAGCGGTGATGGCGAGGAGGCCGAGGCGGCGGCGTGGATCCGGAGCGGCGACGGTCGAGGAGGCCGAGGCGGATTGATCTCTCTTCTCCTCCCTTGCCGGCTCCCCTCTCACCTCACCTCTCTGGACGAGCGGCGGCGAAGGTGGAGAAAGAGGAGGCGAAGGTGGAGAAAGAGGAGGAGGCGAGGTCGCGCCGAATCGAAGCAATGACTTCCACAGTGCGAGTTTCCTTCGCCACGCGCCCTCGTTGCAGCGAGAAAACACGTCTCCCAGTTAGGGGGCGAGCGGCCGAGCGAAGGTGCGGGTCTCAGCGCCATGTACGCGTGAATCTGAGCTGGCGCAGTAGGTAACTCCTCCATGTAGAAGAACTGTGAAGGGCCATAGATCCGATCAACAAATCATCCAAACCGTACATTACACAGTACAAAAGGCTACTATACCAAGTAAATCTTCCTTTTTACCATTAGAGAGAGATACACTGTGTGGCAGTATGACTGTGTGTGACACTCTTGAGTGTGGTCGTACTATAAAACCATGAATCCATCTCAGATTCTCAGGTTTGCAAGCCTAGGGTAGACCATCGACCAAATCCAATGGCTGCTTGGCTCGCCTCGCTGACCATCTCCTTCTTCCTCTTCTTCCTCCATGGCGCCATGGCCATGTCCACCGCCGCGCAGCTCGCCGGGGAGGCGCCGCCGGCGTAGCTGCCAAGGTCAGAACTGGCTGCCATCTGTAGGGTGATGGCTGACCTCCTCGGCGACCCGACGTGGCCGCAGCTCCACCGGCGTCCCTGCACGGACACGCCATGGCCGGGACTCCAGTGCGAGCTCGCCCCCGACGACGCCCGCCACCTGCGCGCCACCAGGCTCCACTTCGGCCCCGACGTCGCCACCCCGCCGTGCAGGCCCGGCGCCAGGCTCGCCGCGCCCGTGCTCCTGGGACTCCCCCACCTCAAGACGCTCTCCCTCTTCGGCTGCTTCGTCGTCGCCGACTGTTAGAAATTAATCTTGTTGTTTCTTAATTTCAGCATGTTTATCTATATGCATGTGTGTATTGCATGGCCTGGAGAGCTAGCTATATGTACGTGGGTGCTGCATGGCTTAGTGAGTAGTGGTTGGCAGTGAGTAGTGAGCCAATAAAAAGCCAGGAGATGAGAGCACATGTATGTAGCTTAGTTAGTTAGCCATGCATAATTGTGGGCTAGTGATTAGCCGAGTCTTGCACAAGATTATGAGTAGGATGTGGTCAGTTTGCATGCATGCAGGTTAGTTGGGTGGTGCAAGCAACGACGTCGGCGAGGACTCAGTACTTGTGAAGTTGCGGCCAAGTAAACAGGGCGTGGGCGTCGTGTGTGGCTCGAGAAGCGGAACAACCAGCTTCGTGTGTGTATGTGCTGTGTTATAAATAGCTGCTCATTGTAATCATTTAGTTAAGAGAAAAAACCAGTGAAAAGGGCACAAGTTGTT]
[+] EMBL AK072883 [CTCCTCTCCTCCTTGTCCGTCTCGATCTAGTCGGATCCGGAGCGGCGGTGTTTGAGGAGGCCGAGGCGGCGGCGTGGATCCAGAGCGGTGATGGCGAGGAGGCCGAGGCGGCGGCGTGGATCCGGAGCGGCGACGGTCGAGGAGGCCGAGGCGGATTGATCTCTCTTCTCCTCCCTTGCCGGCTCCCCTCTCACCTCACCTCTCTGGACGAGCGGCGGCGAAGGTGGAGAAAGAGGAGGCGAAGGTGGAGAAAGAGGAGGAGGCGAGGTCGCGCCGAATCGAAGCAATGACTTCCACAGTGCGAGTTTCCTTCGCCACGCGCCCTCGTTGCAGCGAGAAAACACGTCTCCCAGTTAGGGGGCGAGCGGCCGAGCGAAGGTGCGGGTCTCAGCGCCATGTACGCGTGAATCTGAGCTGGCGCAGTAGGTAACTCCTCCATGTAGAAGAACTGTGAAGGGCCATAGATCCGATCAACAAATCATCCAAACCGTACATTACACAGTACAAAAGGCTACTATACCAAGTAAATCTTCCTTTTTACCATTAGAGAGAGATACACTGTGTGGCAGTATGACTGTGTGTGACACTCTTGAGTGTGGTCGTACTATAAAACCATGAATCCATCTCAGATTCTCAGGTTTGCAAGCCTAGGGTAGACCATCGACCAAATCCAATGGCTGCTTGGCTCGCCTCGCTGACCATCTCCTTCTTCCTCTTCTTCCTCCATGGCGCCATGGCCATGTCCACCGCCGCGCAGCTCGCCGGGGAGGCGCCGCCGGCGTAGCTGCCAAGGTCAGAACTGGCTGCCATCTGTAGGGTGATGGCTGACCTCCTCGGCGACCCGACGTGGCCGCAGCTCCACCGGCGTCCCTGCACGGACACGCCATGGCCGGGACTCCAGTGCGAGCTCGCCCCCGACGACGCCCGCCACCTGCGCGCCACCAGGCTCCACTTCGGCCCCGACGTCGCCACCCCGCCGTGCAGGCCCGGCGCCAGGCTCGCCGCGCCCGTGCTCCTGGGACTCCCCCACCTCAAGACGCTCTCCCTCTTCGGCTGCTTCGTCGTCGCCGACTGTTAGAAATTAATCTTGTTGTTTCTTAATTTCAGCATGTTTATCTATATGCATGTGTGTATTGCATGGCCTGGAGAGCTAGCTATATGTACGTGGGTGCTGCATGGCTTAGTGAGTAGTGGTTGGCAGTGAGTAGTGAGCCAATAAAAAGCCAGGAGATGAGAGCACATGTATGTAGCTTAGTTAGTTAGCCATGCATAATTGTGGGCTAGTGATTAGCCGAGTCTTGCACAAGATTATGAGTAGGATGTGGTCAGTTTGCATGCATGCAGGTTAGTTGGGTGGTGCAAGCAACGACGTCGGCGAGGACTCAGTACTTGTGAAGTTGCGGCCAAGTAAACAGGGCGTGGGCGTCGTGTGTGGCTCGAGAAGCGGAACAACCAGCTTCGTGTGTGTATGTGCTGTGTTATAAATAGCTGCTCATTGTAATCATTTAGTTAAGAGAAAAAACCAGTGAAAAGGGCACAAGTTGTT]
consensusID : consensus_868#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1256 fasta sequence
[CGTCCTCCCTCTCTCTCTCCCCCCTCATCCCTCTCTTTCTCACCCCCTTTCTCCTCCCCTTTGGAGGAACACAACGAGTAGGGACCCAGCCGCCGGCGGCGGCGGGCAGGGGCCGGGGCGGCGCCGGAGCTGCGGAGGAGGAGGAGGATGGACTGGTCGAACCTTGGCGGGGAGGGGCCGGTCTCTCATCGCCGAGCGCGTGGCGGGCTTCCTTCCTCGGCGGCAGTGGCGGCGGAGCGTGCGGAGGAGGATGGATTGGTCGAACCGCTTCCTTCCCCGGCAGTAGCGCAGAGTAGCGACGCCGTTTGCCGCCCGCCGACCCCGCCCGAGATGCTGTGGTGGGAAAGGAGTGTATGGAGGCGGAGTAATGTTCGCGGCGGATGAGGAGCTCGAGCTCCGCGACGTAGAGGGGCGCCGCCGCCACAGCTGGGGACGCGCGGTGCAGAGCGCTACGGAGTCCGGGAGGGACCGACGGGCGGGAGGATGCGATCAAGCTCGTCGTCCTCGCCGGAGGGGGCCATCTCATCGGGTGAAGCCTCGTCGCAGAAGTTGCCGGCAGACCCCGTCGTCGTCGTCATTTATGGAGGCATCCAACGAAGCTCACGGCTATCGCCGCCACTCCCGCCTCTGCCGCCGCTGGTTCCCGCCGCATGCCGGGAGAGACAGACCCACATGTCGCGCGCGCCGACGGCTCCCTTGTTAGAAATTAATCTTGTTGTTTCTTAATTTCAGCATGTTTATCTATACGCATGTGTGTATTGCATGGCCTGGCGAGCTAGCTATATGTACGTGGGTGCTGCATGGCTTAGTGAGTAGTGGTTGGCAGGGAGTAGTGAGCCAATAAAGAGCCAGGAGATGAGAGCACATGTATGTAGCTTAGTTAGTTAGCCATGCATAATTGTGGGCTAGTGATTAGCCGAGTCTTGCACAAGATTAGGAGTAGGAAGTGGTCAGTTTGCATGCATGCAGGTTAGTTGGTTGGTGCAAGCAACGACGTCGGCGAGGACTCAGTACTTGTGAAGTTGCGGCCAAGTAAACAGGACGTGGGCGTCGTGTGTGGCTCGAGAAGCGGAACAACCAGCTTCGTGTGTGTATGTGCTGTGCTCATTGTAATCATTTAGTTAAGAGAAAAAACCAGTGAAAAGGGCACAAGTTGTTTTGGTGCCGCAAAGATCCTGTGTGTTCGCTTCTGTGTTTGTGTTTCTTCCTCGCTGCCTCGTTCAGAAAGTGTAGCTTGTATTCGCGTGAGTTGCTTT]
[+] EMBL AK109155 [CGTCCTCCCTCTCTCTCTCCCCCCTCATCCCTCTCTTTCTCACCCCCTTTCTCCTCCCCTTTGGAGGAACACAACGAGTAGGGACCCAGCCGCCGGCGGCGGCGGGCAGGGGCCGGGGCGGCGCCGGAGCTGCGGAGGAGGAGGAGGATGGACTGGTCGAACCTTGGCGGGGAGGGGCCGGTCTCTCATCGCCGAGCGCGTGGCGGGCTTCCTTCCTCGGCGGCAGTGGCGGCGGAGCGTGCGGAGGAGGATGGATTGGTCGAACCGCTTCCTTCCCCGGCAGTAGCGCAGAGTAGCGACGCCGTTTGCCGCCCGCCGACCCCGCCCGAGATGCTGTGGTGGGAAAGGAGTGTATGGAGGCGGAGTAATGTTCGCGGCGGATGAGGAGCTCGAGCTCCGCGACGTAGAGGGGCGCCGCCGCCACAGCTGGGGACGCGCGGTGCAGAGCGCTACGGAGTCCGGGAGGGACCGACGGGCGGGAGGATGCGATCAAGCTCGTCGTCCTCGCCGGAGGGGGCCATCTCATCGGGTGAAGCCTCGTCGCAGAAGTTGCCGGCAGACCCCGTCGTCGTCGTCATTTATGGAGGCATCCAACGAAGCTCACGGCTATCGCCGCCACTCCCGCCTCTGCCGCCGCTGGTTCCCGCCGCATGCCGGGAGAGACAGACCCACATGTCGCGCGCGCCGACGGCTCCCTTGTTAGAAATTAATCTTGTTGTTTCTTAATTTCAGCATGTTTATCTATACGCATGTGTGTATTGCATGGCCTGGCGAGCTAGCTATATGTACGTGGGTGCTGCATGGCTTAGTGAGTAGTGGTTGGCAGGGAGTAGTGAGCCAATAAAGAGCCAGGAGATGAGAGCACATGTATGTAGCTTAGTTAGTTAGCCATGCATAATTGTGGGCTAGTGATTAGCCGAGTCTTGCACAAGATTAGGAGTAGGAAGTGGTCAGTTTGCATGCATGCAGGTTAGTTGGTTGGTGCAAGCAACGACGTCGGCGAGGACTCAGTACTTGTGAAGTTGCGGCCAAGTAAACAGGACGTGGGCGTCGTGTGTGGCTCGAGAAGCGGAACAACCAGCTTCGTGTGTGTATGTGCTGTGCTCATTGTAATCATTTAGTTAAGAGAAAAAACCAGTGAAAAGGGCACAAGTTGTTTTGGTGCCGCAAAGATCCTGTGTGTTCGCTTCTGTGTTTGTGTTTCTTCCTCGCTGCCTCGTTCAGAAAGTGTAGCTTGTATTCGCGTGAGTTGCTTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_868#0 CTCCTCTCCTCCTTGTCCGTCTCGATCTAGTCGGATCCGGAGCGGCGGTGTTTGAGGAGG 60
consensus_868#1 ------------------------------------------------------------
consensus_868#0 CCGAGGCGGCGGCGTGGATCCAGAGCGGTGATGGCGAGGAGGCCGAGGCGGCGGCGTGGA 120
consensus_868#1 ------------------------------------------------------------
consensus_868#0 TCCGGAGCGGCGACGGTCGAGGAGGCCGAGGCGGATTGATCTCTCTTCTCCTCCCTTGCC 180
consensus_868#1 ------------------------------------------------------------
consensus_868#0 GGCTCCCCTCTCACCTCACCTCTCTGGACGAGCGGCGGCGAAGGTGGAGAAAGAGGAGGC 240
consensus_868#1 ------------------------------------------------------------
consensus_868#0 GAAGGTGGAGAAAGAGGAGGAGGCGAGGTCGCGCCGAATCGAAGCAATGACTTCCACAGT 300
consensus_868#1 ------------------------------------------------------CGTCCT 6
* *
consensus_868#0 GCGAGTTTCCTTCGCCACGCGCCCTCGTTGCAGCGAGAAAACACGTCTCCCAGTTAGGGG 360
consensus_868#1 CCCTCTCTCTCTCCCCCCTCATCCCTCTCTTTCTCACCCCCTTTCTCCTCCCCTTTGGAG 66
* * ** ** ** * * ** * * ** ** ** ** *
consensus_868#0 GCGAGCGGCCGAGCGAAGGTGCGGGTCTCAGCGCCATGTACGCGTGAATCTGAGCTGGCG 420
consensus_868#1 GAACACAAC-GAGTAGGGACCCAGCCGCCGGCGGCG-GCGGGCAGGGGCCGGGGC-GGCG 123
* * * *** * * * * *** * * ** * * * ** ****
consensus_868#0 CAGTAGGTAACTCCTCCATGTAGAAGAACTGTGAAGGGCCA-TAGATCCGATCAACAAAT 479
consensus_868#1 CCGGAG---------CTGCGGAGGAGGAGGAGGATGGACTGGTCGAACC--TTGGCGGG- 171
* * ** * * ** ** * ** ** * * ** ** * *
consensus_868#0 CATCCAAACCGTACATTACACAGTACAAAAGGCTACTATACCAAGTAAATCTTCCTTTTT 539
consensus_868#1 -----GAGGGGCCGGTCTCTCATCGCCGAGCGC----GTGGCGGGCTT-CCTTCCTCGGC 221
* * * * ** * * ** * * * ******
consensus_868#0 ACCATTAGAGAGAGATACACTGTGTGGCAGTATG-ACTGTGTGTGACACTCTTGAGTGTG 598
consensus_868#1 GGCAGTGGCGGCGGA-GCG-TGCGGAGGAGGATGGATTGGTCGAACCGCTTCCTTCCCCG 279
** * * * ** * ** * * ** *** * ** * * ** *
consensus_868#0 GTCGTACTATAAAACCATGAATCCATCTCAGATTCTCAGGTTTGCAAGCCTAGGGTAGAC 658
consensus_868#1 GCAGTAGCGCAGAGTAGCGACGCCGTTTGCCGCCCGCCGACCCC---GCCCGAGATG--C 334
* *** * * ** ** * * * * * *** * * *
consensus_868#0 CATCGACCAAATCCAATGGCTGCTTGGCTCGCCTCGCTGACCATCTCCTTCTTCCTCTTC 718
consensus_868#1 TGTGGTGGGAAAGGAGTGTATG---GAGGCGGAGTAATGTTCGCGGCGGATGAGGAGCTC 391
* * ** * ** ** * ** ** * * **
consensus_868#0 TTCCTCCATGGCGCCATGGCCATGTCCACCGCCGCGCAGCTCGCCGGGGAGGCGCCGCCG 778
consensus_868#1 GAGCTCCGCGACGTAGAGG--GGCGCCGCCGCCACA------GCTGGGGACGCGCGGTGC 443
**** * ** ** ** ***** * ** ***** **** *
consensus_868#0 GCGTAGCTGCCAAGGTCAGAACTGGCTGCCATCTGTAGGGTGATGGCTGACCTCCTCGGC 838
consensus_868#1 AGAGCGCTACGGAGTCCGGGAGGGACCGACGGGCGGGAGGATGCGATCAAGCTCGTCGTC 503
*** * ** * * * * * * * * ** * * *** *** *
consensus_868#0 GACCCGACGTGGCCGCAGCTCCACCGGCGTCCCTGCACGGACACGCCATGGCCGGGACTC 898
consensus_868#1 CTCGCCG-GAGGGGGCCATCTCATCGG-GT---------GAAGCCTCGTCGCAGAAGTTG 552
* * * ** ** ** *** ** ** * * * ** * *
consensus_868#0 CAGTGCGAGCTCGCCCCCGACGACGCCCGCCACCTGCGCGCCACCAGGCTCCACTTCGGC 958
consensus_868#1 CCGGCAGACCCCGTCGTCGTCGTCATTTATGGAG-GCATCCAACGAAGCTCA----CGGC 607
* * ** * ** * ** ** * ** * ** * **** ****
consensus_868#0 CCCGACGTCGCCACCCCGCCGTGCAGGCCCGGCGCCAGGCTCGCCGCGCCCGTGCTCCTG 1018
consensus_868#1 --TATCGCCGCCACTCCCGCCT------CTGCCGCC--GCTGGTTCCCGCCGCATGCCGG 657
** ****** ** * * * * **** *** * * *** ** *
consensus_868#0 GGACTCCCCCACCTCAAGACGCTCTCCCTCTTCGGCTGCTTCGTCGTCGCCGACTGTTAG 1078
consensus_868#1 GAG-------------AGACAGACCCACATGTCGCGCGCGCCGACGGCTCCC-TTGTTAG 703
* **** * * * *** ** ** ** * ** ******
consensus_868#0 AAATTAATCTTGTTGTTTCTTAATTTCAGCATGTTTATCTATATGCATGTGTGTATTGCA 1138
consensus_868#1 AAATTAATCTTGTTGTTTCTTAATTTCAGCATGTTTATCTATACGCATGTGTGTATTGCA 763
******************************************* ****************
consensus_868#0 TGGCCTGGAGAGCTAGCTATATGTACGTGGGTGCTGCATGGCTTAGTGAGTAGTGGTTGG 1198
consensus_868#1 TGGCCTGGCGAGCTAGCTATATGTACGTGGGTGCTGCATGGCTTAGTGAGTAGTGGTTGG 823
******** ***************************************************
consensus_868#0 CAGTGAGTAGTGAGCCAATAAAAAGCCAGGAGATGAGAGCACATGTATGTAGCTTAGTTA 1258
consensus_868#1 CAGGGAGTAGTGAGCCAATAAAGAGCCAGGAGATGAGAGCACATGTATGTAGCTTAGTTA 883
*** ****************** *************************************
consensus_868#0 GTTAGCCATGCATAATTGTGGGCTAGTGATTAGCCGAGTCTTGCACAAGATTATGAGTAG 1318
consensus_868#1 GTTAGCCATGCATAATTGTGGGCTAGTGATTAGCCGAGTCTTGCACAAGATTAGGAGTAG 943
***************************************************** ******
consensus_868#0 GATGTGGTCAGTTTGCATGCATGCAGGTTAGTTGGGTGGTGCAAGCAACGACGTCGGCGA 1378
consensus_868#1 GAAGTGGTCAGTTTGCATGCATGCAGGTTAGTTGGTTGGTGCAAGCAACGACGTCGGCGA 1003
** ******************************** ************************
consensus_868#0 GGACTCAGTACTTGTGAAGTTGCGGCCAAGTAAACAGGGCGTGGGCGTCGTGTGTGGCTC 1438
consensus_868#1 GGACTCAGTACTTGTGAAGTTGCGGCCAAGTAAACAGGACGTGGGCGTCGTGTGTGGCTC 1063
************************************** *********************
consensus_868#0 GAGAAGCGGAACAACCAGCTTCGTGTGTGTATGTGCTGTGTTATAAATAGCTGCTCATTG 1498
consensus_868#1 GAGAAGCGGAACAACCAGCTTCGTGTGTGTATGTGCTGTG-------------CTCATTG 1110
**************************************** *******
consensus_868#0 TAATCATTTAGTTAAGAGAAAAAACCAGTGAAAAGGGCACAAGTTGTT------------ 1546
consensus_868#1 TAATCATTTAGTTAAGAGAAAAAACCAGTGAAAAGGGCACAAGTTGTTTTGGTGCCGCAA 1170
************************************************
consensus_868#0 ------------------------------------------------------------
consensus_868#1 AGATCCTGTGTGTTCGCTTCTGTGTTTGTGTTTCTTCCTCGCTGCCTCGTTCAGAAAGTG 1230
consensus_868#0 --------------------------
consensus_868#1 TAGCTTGTATTCGCGTGAGTTGCTTT 1256
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||