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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8681#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 772 fasta sequence
[ATAAAGCCACCCTCTTTTCTCTTTATTAGTAACGAGAACAAGTGAAGAACACACCTTCTGATTCTTTCCCTCTGATCTATATATTT-CCTATGTGCAGTTCTGCATTGTGTACAAAAGAATAAGCTCCAATAAGCCCCAAAGGGGCATTCAGGTCCCAACTAGTATAAATTTATGACAGGAAAACAACTGCTGCTGCTTTGCTGCAACAGATTTAGTACACTGTAATATGTATTTTGAACTCTAGTGTTTAATATATCCAACACATCATTTTGCACCATCCCTGTAAGTTATAGATCTAGAAGTGTTTCTGTCTTTATAATATCCACTGCCTGAACCAGTTCTTCTGTTTGGCTGGGGAGAAATAAACCAACCCCGAACTCCTCCAGGCCTATTCTGAACCAAGAACAACCCTTACATGCAAAGCACATAACCAAGATGCAAACCTTACTAATCCCTGGCAGCCTTGTTTCTCCAAGCAGCAATTTGCTTCGGAAAGGTGTCGAAAATAGGCTTTGGAATGCTGTCGAGAAGCAGGATTGGGAGAGGGAGGGTGAATGCATCTGGTTTTAAGTTCCAC-TTGCTCTTAAGCCACACAGATGCAATGCTGTTGTCTGAATCTTGGAATTCTGGGGTGCTTGATGACTTCCTCACAGCTTGCAATCCATCACCATATGAAGGCACTGCGGTTGCTACAAGATCTTGCTGGCTGTTGTTTATTTCCGGTCGACTGCCAGATTTTGGCCTCAGCGCCAAGCCCGGGCCGGCCTTCATC]
[+] EMBL CB685555 [ATAAAGCCACCCTCTTTTCTCTTTATTAGTAACGAGAACAAGTGAAGAACACACCTTCTGATTCTTTCCCTCTGATCTATATATTT CCTATGTGCAGTTCTGCATTGTGTACAAAAGAATAAGCTCCAATAAGCCCCAAAGGGGCATTCAGGTCCCAACTAGTATAAATTTATGACAGGAAAACAACTGCTGCTGCTTTGCTGCAACAGATTTAGTACACTGTAATATGTATTTTGAACTCTAGTGTTTAATATATCCAACACATCATTTTGCACCATCCCTGTAAGTTATAGATCTAGAAGTGTTTCTGTCTTTATAATATCCACTGCCTGAACCAGTTCTTCTGTTTGGCTGGGGAGAAATAAACCAACCCCGAACTCCTCCAGGCCTATTCTGAACCAAGAACAACCCTTACATGCAAAGCACATAACCAAGATGCAAACCTTACTAATCCCTGGCAGCCTTGTTTCTCCAAGCAGCAATTTGCTTCGGAAAGGTGTCGAAAATAGGCTTTGGAATGCTGTCGAGAAGCAGGATTGGGAGAGGGAGGGTGAATGCATCTGGTTTTAAGTTCCAC TTGCTCTTAAGCCACACAGATGCAATGCTGTTGTCTGAATCTTGGAATTCTGGGGTGCTTGATGACTTCCTCACAGCTTGCAATCCATCACCATATGAAGGCACTGCGGTTGCTACAAGATCTTGCTGGCTGTTGTTTATTTCCGGTCGACTGCCAGATTTTGGCCTCAGCGCCAAGCCCGGGCCGGCCTTCATC]
[+] EMBL CB967391 [ ATCTATATATTT CCTATGTGCAGTTCTGCATTGTGTACAAAAGAATAAGCTCCAATAAGCCCCAAAGGGGCATTCAGGTCCCAACTAGTATAAATTTATGACAGGAAAACAACTGCTGCTGCTTTGCTGCAACAGATTTAGTACACTGTAATATGTATTTTGAACTCTAGTGTTTAATATATCCAACACATCATTTTGCACCATCCCTGTAAGTTATAGATCTAGAAGTGTTTCTGTCTTTATAATATCCACTGCCTGAACCAGTTCTTCTGTTTGGCTGGGGAGAAATAAACCAACCCCGAACTCCTCCAGGCCTATTCTGAACCAAGAACAACCCTTACATGCAAAGCACATAACCAAGATGCAAACCTTACTAATCCCTGGCAGCCTTGTTTCTCCAAGCAGCAATTTGCTTCGGAAAGGTGTCGAAAATAGGCTTTGGAATGCTGTCGAGAAGCAGGATTGGGAGAGGGAGGGTGAATGCATCTGGTTTTAAGTTCCAC TTGCTCTTAAGCCACACAGATGCAATGCTGTTGT ]
[+] EMBL CB966114 [ CTATATATTT CCTATGTGCAGTTCTGCATTGTGTACAAAAGAATAAGCTCCAATAAGCCCCAAAGGGGCATTCAGGTCCCAACTAGTATAAATTTATGACAGGAAAACAACTGCTGCTGCTTTGCTGCAACAGATTTAGTACACTGTAATATGTATTTTGAACTCTAGTGTTTAATATATCCAACACATCATTTTGCACCATCCCTGTAAGTTATAGATCTAGAAGTGTTTCTGTCTTTATAATATCCACTGCCTGAACCAGTTCTTCTGTTTGGCTGGGGAGAAATAAACCAACCCCGAACTCCTCCAGGCCTATTCTGAACCAAGAACAACCCTTACATGCAAAGCACATAACCAAGATGCAAACCTTACTAATCCCTGGCAGACTTGTTTCTCCAAGCAGCAATTTGCTTCGGAAAGGTGTCGAAAATAGGCTTTGGAATGCTGTCGAGAAGCAGGATTGGGAGAGGGAGGGTGAATGCATCCGGTTTAAAGTTCCACTTTGATCTTAAGACAAACAGATGCAATGCTCGAGTCTGAATCTTGGAATa ]
[+] EMBL BI306204 [ CTATATATTTCCCTATGTGCAGTTCTGCTTTGGGTACAAAAAAATAAGCTCCAATAACCCCCAAAGGGGCTTTCAGGTCCCAACTAGTATAAATTTATGACAGGAAAACAACTGCTGCTGCTTTGCTGCAACAAATTTAGTACACTGTAATATGTATTTTGAACTCTAGGGTTTAATATATCCAACACATCATTTTGCACCATCCCTGTAAGTTATAAATCTAAAAGTGTTTCTGTCTTTATAATATCCACTGCCTGAACCAGTTCTTCTGTTTGGCTGGGGAAAAATAAACCAACCCCGAACTCCTCCAGGCCTATTCTGAACCAAAAACAACCCTTACTTGCAAAGCACATAACCAAAATGCAAACCTTACTAATCCCTGGCAGCCTTGTTTCTCCAAGCAGCAATTTGCTTCGGAAAGGTGTCAAAAATAGGCTTTGGAATGCTGTCGAAAACCAGGATTGGGAAAGGGAGGGTGAATGCATCTGGTTTTAAGTTCCAC TTGCTCTTAAGCCACACAAATGCAATGCTGTTG ]
consensusID : consensus_8681#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 650 fasta sequence
[TTTTTTTCTTTTTTTTTTGAAGAACACACATTGCTGATTCTTTCCCTCTGATCTATATATTTCCTATGTGCAGTTCTGCATTGTGTACAAAAGAATAAGCTCCAATAAGCCCCAAAGGGGCATTCAGGTCCCAACTAGTATAAATTTATGACAGGAAAACAACTGCTGCTGCTTTGCTGCAACAGATTTAGTACACTGTAATATGTATTTTGAACTCTAGTGTTTAATATATCCAACACATCATTTTGCACCATCCCTGTAAGCTATAGATCTAGAAGGGTTTCTGTCTTTATAATATCCACTGCCTGAACCAGTTCTTCTGTTTGGCTGGGGAGAAATAACGCCACCCCGAACTCCTCCAGGCCTATTCTGAACCAAGAACAAACCTTACATGCAGAGTACATAACCAAGACGCGCATCTTACTACCGCCTGGTCCGCTTGCCCCTCCCAGCCCGCACTTTCTTCGGAAAGGGGGCGAAAATAGGTTGTGCAACGCCACCGCTCAACCAGATCGTCACACCGCACCACACACGCGTTCCCTTTAGCCGTCCCGTCCGCTCGCCTTTTCCCTCCCCGTGTGCTTGCGTCTGCGTTCACGCCCTCCCGCGCAGCCCATGCCCGTCCCCCCCGTCCCGTTCCGGTCGCGGGC]
[+] EMBL CA761589 [TTTTTTTCTTTTTTTTTTGAAGAACACACATTGCTGATTCTTTCCCTCTGATCTATATATTTCCTATGTGCAGTTCTGCATTGTGTACAAAAGAATAAGCTCCAATAAGCCCCAAAGGGGCATTCAGGTCCCAACTAGTATAAATTTATGACAGGAAAACAACTGCTGCTGCTTTGCTGCAACAGATTTAGTACACTGTAATATGTATTTTGAACTCTAGTGTTTAATATATCCAACACATCATTTTGCACCATCCCTGTAAGCTATAGATCTAGAAGGGTTTCTGTCTTTATAATATCCACTGCCTGAACCAGTTCTTCTGTTTGGCTGGGGAGAAATAACGCCACCCCGAACTCCTCCAGGCCTATTCTGAACCAAGAACAAACCTTACATGCAGAGTACATAACCAAGACGCGCATCTTACTACCGCCTGGTCCGCTTGCCCCTCCCAGCCCGCACTTTCTTCGGAAAGGGGGCGAAAATAGGTTGTGCAACGCCACCGCTCAACCAGATCGTCACACCGCACCACACACGCGTTCCCTTTAGCCGTCCCGTCCGCTCGCCTTTTCCCTCCCCGTGTGCTTGCGTCTGCGTTCACGCCCTCCCGCGCAGCCCATGCCCGTCCCCCCCGTCCCGTTCCGGTCGCGGGC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8681#0 ATAAAGCCACCCTCTTTTCTCTTTATTAGTAACGAGAACAAGTGAAGAACACACCTT-CT 59
consensus_8681#1 -------------TTTTTTTCTTTTTTTTT------------TGAAGAACACACATTGCT 35
**** ***** ** * ************ ** **
consensus_8681#0 GATTCTTTCCCTCTGATCTATATATTTCCTATGTGCAGTTCTGCATTGTGTACAAAAGAA 119
consensus_8681#1 GATTCTTTCCCTCTGATCTATATATTTCCTATGTGCAGTTCTGCATTGTGTACAAAAGAA 95
************************************************************
consensus_8681#0 TAAGCTCCAATAAGCCCCAAAGGGGCATTCAGGTCCCAACTAGTATAAATTTATGACAGG 179
consensus_8681#1 TAAGCTCCAATAAGCCCCAAAGGGGCATTCAGGTCCCAACTAGTATAAATTTATGACAGG 155
************************************************************
consensus_8681#0 AAAACAACTGCTGCTGCTTTGCTGCAACAGATTTAGTACACTGTAATATGTATTTTGAAC 239
consensus_8681#1 AAAACAACTGCTGCTGCTTTGCTGCAACAGATTTAGTACACTGTAATATGTATTTTGAAC 215
************************************************************
consensus_8681#0 TCTAGTGTTTAATATATCCAACACATCATTTTGCACCATCCCTGTAAGTTATAGATCTAG 299
consensus_8681#1 TCTAGTGTTTAATATATCCAACACATCATTTTGCACCATCCCTGTAAGCTATAGATCTAG 275
************************************************ ***********
consensus_8681#0 AAGTGTTTCTGTCTTTATAATATCCACTGCCTGAACCAGTTCTTCTGTTTGGCTGGGGAG 359
consensus_8681#1 AAGGGTTTCTGTCTTTATAATATCCACTGCCTGAACCAGTTCTTCTGTTTGGCTGGGGAG 335
*** ********************************************************
consensus_8681#0 AAATAAACCAACCCCGAACTCCTCCAGGCCTATTCTGAACCAAGAACAACCCTTACATGC 419
consensus_8681#1 AAATAACGCCACCCCGAACTCCTCCAGGCCTATTCTGAACCAAGAACAAACCTTACATGC 395
****** * *************************************** **********
consensus_8681#0 AAAGCACATAACCAAGATGCAAACCTTACTAATCCCTGGCAGCCTTGTTTCTCCAAGCAG 479
consensus_8681#1 AGAGTACATAACCAAGACGCGCATCTTACTACCGCCTGGTCCGCTTGCCCCTCCCAGCCC 455
* ** ************ ** * ******* ***** **** **** ***
consensus_8681#0 CAATTTGCTTCGGAAAGGTGTCGAAAATAGGCTTTGGAATGCTGTCGAGAAGCAGGATTG 539
consensus_8681#1 GCACTTTCTTCGGAAAGGGGGCGAAAATAGGTTGTGCAACGCCACCGCTCAACCAGATCG 515
* ** *********** * ********** * ** ** ** ** * * *** *
consensus_8681#0 GGAGAGGG-AGGGTGAATGCATCTGGTTTTAA-GTTCCACTTGCTCTTAAGCCACACAGA 597
consensus_8681#1 TCACACCGCACCACACACGCGTTCCCTTTAGCCGTCCCGTCCGCTCGCCTTTTCCCTCCC 575
* * * * * ** * *** ** ** **** *
consensus_8681#0 TGCAATGCTGTTGTCTGAATCTTGGAATTCTGGGGTGCTTGATGACTTCCTCACAGCTTG 657
consensus_8681#1 CGTG-TGCTTGCGTCTGCGTTCACGCCCTCCCGCGCAGCCCATGCCCGTCCCCCCCGTCC 634
* **** ***** * * ** * * *** * * * * *
consensus_8681#0 CAATCCATCACCATATGAAGGCACTGCGGTTGCTACAAGATCTTGCTGGCTGTTGTTTAT 717
consensus_8681#1 CGTTCCGGTCGCGGGC-------------------------------------------- 650
* *** *
consensus_8681#0 TTCCGGTCGACTGCCAGATTTTGGCCTCAGCGCCAAGCCCGGGCCGGCCTTCATC 772
consensus_8681#1 -------------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||