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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8683#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1668 fasta sequence
[AACAACCCCATCCCCAAGAAACTAAACCTCATCCCCGCCCCCACCCATGTCCGACCACCACCACCTCACCGGCGACCACCACCCCTCCCCGGCGAGCGCCGCCACCACCGCTCTAGGTCCCCTGCTCCTCCTCCCGTCGGAGCTCCTCCACGACATCCTCATCCGCCTCGCCCTCCCGGAGCTCCTCCGCGTCCGCTCCGTCGCGCGCCCGCTCTCCCACGTCATCTCCTCCCCGGACTTCCGCCGCCTGTACCACCTCTCCTCCGCCGCCTCCGGGCCAGGCCCCGCGGCCGCGTGGCTCCTCGTCTTCAAGAAGCTCCGCCCCCGCGACGCCGCGCTCCGGGGGTTCCATGGGCCGTCCGGCCGCTGGTTCCGCATCCCCGTCTCCGCCATCCTCGCGCCCGCGGTGCCACCCGGCGAGGACCTCTACTTCCTGGCCGCGTCCGGCAGCTCCTTCCTCTTCGCCGCCAACGGCCGCCGCGAGCTCGTCGTCGTCGACCTCTCGGCGCACGCCGCCCGCCGCCTCCCGCCGTCCCCGCTCGGCCCCCGCGGCACCTCCTCCTGGCGCCGCTTCGGCCTCAAGCTCGTCGCCGATCCCCCCGGGTCGAGCCAGTTTAGGTTTCTGTTCGCTGAGCTGGTGAACAACACGCCACTCCTCTTCGAGTACCAGTCCGAGACGGACACGTGGCAGTCATCGGAGGCGGTCCAGGCGGAGGGGGCGTCGACGGCGGCCGGGACGGAGGGGACGTTCCTGTGCGCGGCGCACGCCGGGCCGGACTGCGTGATGGTGTACTCCGGGCCGGGCGTGGAGCGGCCGGTCTTCTTCCGGCCGCGGTTCCCGCACAACCCGAACGGCGGCGGCGACAGGCTCCACGTGTACGGCGACGGGAGCGCCGCGGTGGTCCGGTCGACGGTGATCGACGAGCCGGGCAGGCCGCGGGTGAAGGTGGTGGCCGGCGTGGACCTGTACGGGTTCGGGTCGGTCGTCGGCGGCGACTGGCAGCTGGCCTCCACCGTGCCGGGCGAGCTGGTGGAGGGGTTCCGGAAGCCGTACGCCGTGATGACCGGGCTGCTGTCGGAGCGGGAGGGCGTGGTCCGGCTCGTCCTCATCTCCAACTGCCGTGGCGCCTGGGACATCGTGTGGCTGTCGTACGACCGCGCCCGCGGCGAGTGGTGGTGGGTGCCCGTGCCGGACTGGGGCACCAAGGGGCTCAACGTGGCCGGAATCGCCGTCTCCTCCACCTTCTCCCGCCTCTGGCCGCCGGCCGCCGCCTCGTCCTGCACCACCACCACCTCCCAGTGAACCGAACTCGCCGGCGTCTCTGCGTCACCGTGCGGCTTACGGCGAGCGGTGGGGAATTGGATTGTTAGGCCCAACGTGGCAATGGGCCCCGCACCCGTGTAAGTGGTGGGCCTCCTCCCCCGTGCCCGTGGGGCCGTCGCATAATGCGACATGATCTTGCACAATGGCTTCTCCGATGGCGACAAATCGTCGAGTGCGAGTGAGTGTGCTTCAGATAAGGAGGGGTGTACTGGCGTGCGTGCAAGCACTCTTCTCTATAGTTCTCTTTTAGTATCACTGTTCATTGTTCATAAGCCGTGTGAGTGTAGCTTTGTGTTCATCTTCTCGTAAACCAAGTAAAAAGGGCAGGCTGGTACTCTGTTCTC]
[+] EMBL AK101723 [AACAACCCCATCCCCAAGAAACTAAACCTCATCCCCGCCCCCACCCATGTCCGACCACCACCACCTCACCGGCGACCACCACCCCTCCCCGGCGAGCGCCGCCACCACCGCTCTAGGTCCCCTGCTCCTCCTCCCGTCGGAGCTCCTCCACGACATCCTCATCCGCCTCGCCCTCCCGGAGCTCCTCCGCGTCCGCTCCGTCGCGCGCCCGCTCTCCCACGTCATCTCCTCCCCGGACTTCCGCCGCCTGTACCACCTCTCCTCCGCCGCCTCCGGGCCAGGCCCCGCGGCCGCGTGGCTCCTCGTCTTCAAGAAGCTCCGCCCCCGCGACGCCGCGCTCCGGGGGTTCCATGGGCCGTCCGGCCGCTGGTTCCGCATCCCCGTCTCCGCCATCCTCGCGCCCGCGGTGCCACCCGGCGAGGACCTCTACTTCCTGGGCGCGTCCGGCAGCTCCTTCCTCTTCGCCGCCAACGGCCGCCGCGAGCTCGTCGTCGTCGACCTCTCGGCGCACGCCGCCCGCCGCCTCCCGCCGTCCCCGCTCGGCCCCCGCGGCACCTCCTCCTGGCGCCGCTTCGGCCTCAAGCTCGTCGCCGATCCCCCCGGGTCGAGCCAGTTTAGGTTTCTGTTCGCTGAGCTGGTGAACAACACGCCACTCCTCTTCGAGTACCAGTCCGAGACGGACACGTGGCAGTCATCGGAGGCGGTCCAGGCGGAGGGGGCGTCGACGGCGGCCGGGACGGAGGGGACGTTCCTGTGCGCGGCGCACGCCGGGCCGGACTGCGTGATGGTGTACTCCGGGCCGGGCGTGGAGCGGCCGGTCTTCTTCCGGCCGCGGTTCCCGCACAACCCGAACGGCGGCGGCGACAGGCTCCACGTGTACGGCGACGGGAGCGCCGCGGTGGTCCGGTCGACGGTGATCGACGAGCCGGGCAGGCCGCGGGTGAAGGTGGTGGCCGGCGTGGACCTGTACGGGTTCGGGTCGGTCGTCGGCGGCGACTGGCAGCTGGCCTCCACCGTGCCGGGCGAGCTGGTGGAGGGGTTCCGGAAGCCGTACGCCGTGATGACCGGGCTGCTGTCGGAGCGGGAGGGCGTGGTCCGGCTCGTCCTCATCTCCAACTGCCGTGGCGCCTGGGACATCGTGTGGCTGTCGTACGACCGCGCCCGCGGCGAGTGGTGGTGGGTGCCCGTGCCGGACTGGGGCACCAAGGGGCTCAACGTGGCCGGAATCGCCGTCTCCTCCACCTTCTCCCGCCTCTGGCCGCCGGCCGCCGCCTCGTCCTGCACCACCACCACCTCCCAGTGAACCGAACTCGCCGGCGTCTCTGCGTCACCGTGCGGCTTACGGCGAGCGGTGGGGAATTGGATTGTTAGGCCCAACGTGGCAATGGGCCCCGCACCCGTGTAAGTGGTGGGCCTCCTCCCCCGTGCCCGTGGGGCCGTCGCATAATGCGACATGATCTTGCACAATGGCTTCTCCGATGGCGACAAATCGTCGAGTGCGAGTGAGTGTGCTTCAGATAAGGAGGGGTGTACTGGCGTGCGTGCAAGCACTCTTCTCTATAGTTCTCTTTTAGTATCACTGTTCATTGTTCATAAGCCGTGTGAGTGTA ]
[+] EMBL AU162267 [ CGTCTTCAAGAAGCTCCGCCCCCGCGACGCCGCGCTCCGGGGGTTCCATGGGCCGTCCGGCCGCTGGTTCCGCATCCCCGTCTCCGCCATCCTCGCGCCCGCGGTGCCACCCGGCGAGGACCTCTACTTCCTGGCCGCGTCCGGCAGCTCCTTCCTCTTCGCCGCCAACGGCCGCCGCGAGCTCGTCGTCGTCGACCTCTCGGCGCACG CGCCCGCCGCCTCCCGCCGTCCCCGCTCGGCC ]
[+] EMBL CB685515 [ ggccctGACCTCTACTTCCTGGCCGCGTCCGGCAGCTCCTTCCTCTTCGCCGCCAACGGCCGCCGCGAGCTCGTCGTCGTCGACCTCTCGGCGCACGCCGCCCGCCGCCTCCCGCCGTCCCCGCTCGGCCCCCGCGGCACCTCCTCCTGGCGCCGCTTCGGCCTCAAGCTCGTCGCCGATCCCCCCGGGTCGAGCCAGTTTAGGTTTCTGTTCGCTGAGCTGGTGAACAACACGCCACTCCTCTTCGAGTACCAGTCCGAGACGGACACGTGGCAGTCATCGGAGGCGGTCCAGGCGGAGGGGGCGTCGACGGCGGCCGGGACGGAGGGGACGTTCCTGTGCGCGGCGCACGCCGGGCCGGACTGCGTGATGGTGTACTCCGGGCCGGGCGTGGAGCGGCCGGTCTTCTTCCGGCCGCGGTTCCCGCACAACCCGAACGGCGGCGGCGACAGGCTCCACGTGTACGGCGACGGGAGCGCCGCGGTGGTCCGGTCGACGGTGATCGACGAGCCGGGCAGGCCGCGGGTGAAGGTGGTGGCCGGCGTGGACCTGTACGGGTTCGGGTCGGTCCTCccc ]
[+] EMBL AK061541 [ AGGTTTCTGTTCGCTGAGCTGGTGAACAACACGCCACTCCTCTTCGAGTACCAGTCCGAGACGGACACGTGGCAGTCATCGGAGGCGGTCCAGGCGGAGGGGGCGTCGACGGCGGCCGGGACGGAGGGGACGTTCCTGTGCGCGGCGCACGCCGGGCCGGACTGCGTGATGGTGTACTCCGGGCCGGGCGTGGAGCGGCCGGTCTTCTTCCGGCCGCGGTTCCCGCACAACCCGAACGGCGGCGGCGACAGGCTCCACGTGTACGGCGACGGGAGCGCCGCGGTGGTCCGGTCGACGGTGATCGACGAGCCGGGCAGGCCGCGGGTGAAGGTGGTGGCCGGCGTGGACCTGTACGGGTTCGGGTCGGTCGTCGGCGGCGACTGGCAGCTGGCCTCCACCGTGCCGGGCGAGCTGGTGGAGGGGTTCCGGAAGCCGTACGCCGTGATGACCGGGCTGCTGTCGGAGCGGGAGGGCGTGGTCCGGCTCGTCCTCATCTCCAACTGCCGTGGCGCCTGGGACATCGTGTGGCTGTCGTACGACCGCGCCCGCGGCGAGTGGTGGTGGGTGCCCGTGCCGGACTGGGGCACCAAGGGGCTCAACGTGGCCGGAATCGCCGTCTCCTCCACCTTCTCCCGCCTCTGGCCGCCGGCCGCCGCCTCGTCCTGCACCACCACCACCTCCCAGTGAACCGAACTCGCCGGCGTCTCTGCGTCACCGTGCGGCTTACGGCGAGCGGTGGGGAATTGGATTGTTAGGCCCAACGTGGCAATGGGCCCCGCACCCGTGTAAGTGGTGGGCCTCCTCCCCCGTGCCCGTGGGGCCGTCGCATAATGCGACATGATCTTGCACAATGGCTTCTCCGATGGCGACAAATCGTCGAGTGCGAGTGAGTGTGCTTCAGATAAGGAGGGGTGTACTGGCGTGCGTGCAAGCACTCTTCTCTATAGTTCTCTTTTAGTATCACTGTTCATTGTTCATAAGCCGTGTGAGTGTAGCTTTGTGTTCATCTTCTCGTAAACCAAGTAAAAAGGGCAGGCTGGTACTCTGTTCTC]
consensusID : consensus_8683#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 842 fasta sequence
[CACCGGCGACCACCACCCCTCCCCGGCGAGCGCCGCCACCACCGCTCTAGGTCCCCTGCTGCTCCTCCCGTCAGAGCTCCTCCACGACATCCTCATCCGCCTCGCCCTCCCGGAGCTCCTCCGCGTCCGCTCCGTCGCGCGCCCGCTCTCCCACGTCATCTCCTCCCCGGACTTCCGCCGCCTGTACCACCTCTCCTCCGCCGCCTCCGGGCCAGGCCCCGCGGCCGCGTGGCTCCTCGTCTTCAAGAAGCTCCGCCCCCGCGACGCCGCGCTCCGGGGGTTCCATGGGCCGTCCGGCCGCTGGTTCCGCATCCCCGTCTCCGCCATCCTCGCGCCCGCGGTGCCACCCGGCGAGGACCTCTACTTCCTGGCCGCGTCCGGCAGCTCCTTCCTCTTCGCCGTCAACGGTCGCCGCGAGCTCGTCGTCGTCGACCTCTCGGCGCACGCCGCCCGCCTGCTCCCGCCGTCCCCGCTCGGCCTACGCGGACCTTCTCCTGGCGCCGTTCGGGCTCAAGCTCGTCGCGATCCCCCGGGCCAGCCAGTTAGGTTCTGGTCCTGAGCTGGGACAAACGCACTCCTTTCAATCCCGTCCAACGGACACTGGCATATCGGAGCTGCCAACCGAGGGGCTGAGGGGCCGGACCGGGACTCCTTGACGGCACGCGGCCGGACCGTAGGGTCCCGGGCGGGCGGACGGCGGATTTCGGCCGGGCGCAACCAACGAGGCGAGAGGTATCGTGGTCGAAGCCGAGGGGTGAGTTGAGACACGGCTCATATGTGGAGGGACTACGGGTGGCCGTGCGCCGCTCTCGATGCTGAGGTGATGTTAGATGACATAGACA]
[+] EMBL AW155052 [CACCGGCGACCACCACCCCTCCCCGGCGAGCGCCGCCACCACCGCTCTAGGTCCCCTGCTGCTCCTCCCGTCAGAGCTCCTCCACGACATCCTCATCCGCCTCGCCCTCCCGGAGCTCCTCCGCGTCCGCTCCGTCGCGCGCCCGCTCTCCCACGTCATCTCCTCCCCGGACTTCCGCCGCCTGTACCACCTCTCCTCCGCCGCCTCCGGGCCAGGCCCCGCGGCCGCGTGGCTCCTCGTCTTCAAGAAGCTCCGCCCCCGCGACGCCGCGCTCCGGGGGTTCCATGGGCCGTCCGGCCGCTGGTTCCGCATCCCCGTCTCCGCCATCCTCGCGCCCGCGGTGCCACCCGGCGAGGACCTCTACTTCCTGGCCGCGTCCGGCAGCTCCTTCCTCTTCGCCGTCAACGGTCGCCGCGAGCTCGTCGTCGTCGACCTCTCGGCGCACGCCGCCCGCCTGCTCCCGCCGTCCCCGCTCGGCCTACGCGGACCTTCTCCTGGCGCCGTTCGGGCTCAAGCTCGTCGCGATCCCCCGGGCCAGCCAGTTAGGTTCTGGTCCTGAGCTGGGACAAACGCACTCCTTTCAATCCCGTCCAACGGACACTGGCATATCGGAGCTGCCAACCGAGGGGCTGAGGGGCCGGACCGGGACTCCTTGACGGCACGCGGCCGGACCGTAGGGTCCCGGGCGGGCGGACGGCGGATTTCGGCCGGGCGCAACCAACGAGGCGAGAGGTATCGTGGTCGAAGCCGAGGGGTGAGTTGAGACACGGCTCATATGTGGAGGGACTACGGGTGGCCGTGCGCCGCTCTCGATGCTGAGGTGATGTTAGATGACATAGACA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8683#0 AACAACCCCATCCCCAAGAAACTAAACCTCATCCCCGCCCCCACCCATGTCCGACCACCA 60
consensus_8683#1 ------------------------------------------------------------
consensus_8683#0 CCACCTCACCGGCGACCACCACCCCTCCCCGGCGAGCGCCGCCACCACCGCTCTAGGTCC 120
consensus_8683#1 ------CACCGGCGACCACCACCCCTCCCCGGCGAGCGCCGCCACCACCGCTCTAGGTCC 54
******************************************************
consensus_8683#0 CCTGCTCCTCCTCCCGTCGGAGCTCCTCCACGACATCCTCATCCGCCTCGCCCTCCCGGA 180
consensus_8683#1 CCTGCTGCTCCTCCCGTCAGAGCTCCTCCACGACATCCTCATCCGCCTCGCCCTCCCGGA 114
****** *********** *****************************************
consensus_8683#0 GCTCCTCCGCGTCCGCTCCGTCGCGCGCCCGCTCTCCCACGTCATCTCCTCCCCGGACTT 240
consensus_8683#1 GCTCCTCCGCGTCCGCTCCGTCGCGCGCCCGCTCTCCCACGTCATCTCCTCCCCGGACTT 174
************************************************************
consensus_8683#0 CCGCCGCCTGTACCACCTCTCCTCCGCCGCCTCCGGGCCAGGCCCCGCGGCCGCGTGGCT 300
consensus_8683#1 CCGCCGCCTGTACCACCTCTCCTCCGCCGCCTCCGGGCCAGGCCCCGCGGCCGCGTGGCT 234
************************************************************
consensus_8683#0 CCTCGTCTTCAAGAAGCTCCGCCCCCGCGACGCCGCGCTCCGGGGGTTCCATGGGCCGTC 360
consensus_8683#1 CCTCGTCTTCAAGAAGCTCCGCCCCCGCGACGCCGCGCTCCGGGGGTTCCATGGGCCGTC 294
************************************************************
consensus_8683#0 CGGCCGCTGGTTCCGCATCCCCGTCTCCGCCATCCTCGCGCCCGCGGTGCCACCCGGCGA 420
consensus_8683#1 CGGCCGCTGGTTCCGCATCCCCGTCTCCGCCATCCTCGCGCCCGCGGTGCCACCCGGCGA 354
************************************************************
consensus_8683#0 GGACCTCTACTTCCTGGCCGCGTCCGGCAGCTCCTTCCTCTTCGCCGCCAACGGCCGCCG 480
consensus_8683#1 GGACCTCTACTTCCTGGCCGCGTCCGGCAGCTCCTTCCTCTTCGCCGTCAACGGTCGCCG 414
*********************************************** ****** *****
consensus_8683#0 CGAGCTCGTCGTCGTCGACCTCTCGGCGCACGCCGCCCGCCGCCTCCCGCCGTCCCCGCT 540
consensus_8683#1 CGAGCTCGTCGTCGTCGACCTCTCGGCGCACGCCGCCCGCCTGCTCCCGCCGTCCCCGCT 474
***************************************** *****************
consensus_8683#0 CGGCCCCCGCGGCACCTCCTCCTGGCGCCGCTTCGGCCTCAAGCTCGTCGCCGATCCCCC 600
consensus_8683#1 CGGCCTACGCGG-ACCTTCTCCTGGCGCCG-TTCGGGCTCAAGCTCGTCGC-GATCCCCC 531
***** ***** **** ************ ***** ************** ********
consensus_8683#0 CGGGTCGAGCCAGTTTAGGTTTCTGTTCGCTGAGCTGGTGAACAACACGCCACTCCTCTT 660
consensus_8683#1 --GGGCCAGCCAGTTAGG--TTCTGGTC-CTGAGCTGG--GACAA-ACGC-ACTCCT-TT 581
** * ******** * ***** ** ********* **** **** ****** **
consensus_8683#0 CGAGTACCAGTCCGAGACGGACACGTGGCAGTCATCGGAGGCGGTCCAGGCGGAGGGGGC 720
consensus_8683#1 CAAT--CCCGTCCAA--CGGACAC-TGGCA--TATCGGAGCTG---CCAACCGAGGGGCT 631
* * ** **** * ******* ***** ******* * * * ******
consensus_8683#0 GTCGACGGCGGCCGGGACGGAGGGGACGTTCCTGTGCGCGGCGCACGCCGGGCCGGACTG 780
consensus_8683#1 G-----AGGGGCCGGACCGGGA------CTCCTTGACG----GCACGC--GGCCGGACCG 674
* * ****** *** **** ** ****** ******** *
consensus_8683#0 CGTGATGGTGTACTCCGGGCCGGGCGTGGAGCGGCCGGTCTTCTTCCGGCCGCGGTTCCC 840
consensus_8683#1 TAGGG--------TCCCGGGCGGGCG---GACGGC-GGATTTCGGCCGGGCGCAA----C 718
* *** ** ****** **** ** *** **** *** *
consensus_8683#0 GCACAACCCGAACGGCGGCGGCGACAGGCTCCACGTGTACGGCGACGGGAGCGCCGCG-G 899
consensus_8683#1 CAACGAGGCGAGAGGTATCGTGGTCGAAGCCGAGGGGTGAGTTGAGACACGGCTCATATG 778
** * *** ** ** * * * * * ** * ** * * *
consensus_8683#0 TGGTCCGGTCGACGGTGATCGACGAGCCGGGCAGGCCGCGGGTGAAGGTGGTGGCCGGCG 959
consensus_8683#1 TGGAGGGACTACGGGTGGCCG-TGCGCCGCTCTCGATGCTGA-GGTGATGTTAGATGACA 836
*** * **** ** * **** * * ** * * * ** * * * *
consensus_8683#0 TGGACCTGTACGGGTTCGGGTCGGTCGTCGGCGGCGACTGGCAGCTGGCCTCCACCGTGC 1019
consensus_8683#1 TAGACA------------------------------------------------------ 842
* ***
consensus_8683#0 CGGGCGAGCTGGTGGAGGGGTTCCGGAAGCCGTACGCCGTGATGACCGGGCTGCTGTCGG 1079
consensus_8683#1 ------------------------------------------------------------
consensus_8683#0 AGCGGGAGGGCGTGGTCCGGCTCGTCCTCATCTCCAACTGCCGTGGCGCCTGGGACATCG 1139
consensus_8683#1 ------------------------------------------------------------
consensus_8683#0 TGTGGCTGTCGTACGACCGCGCCCGCGGCGAGTGGTGGTGGGTGCCCGTGCCGGACTGGG 1199
consensus_8683#1 ------------------------------------------------------------
consensus_8683#0 GCACCAAGGGGCTCAACGTGGCCGGAATCGCCGTCTCCTCCACCTTCTCCCGCCTCTGGC 1259
consensus_8683#1 ------------------------------------------------------------
consensus_8683#0 CGCCGGCCGCCGCCTCGTCCTGCACCACCACCACCTCCCAGTGAACCGAACTCGCCGGCG 1319
consensus_8683#1 ------------------------------------------------------------
consensus_8683#0 TCTCTGCGTCACCGTGCGGCTTACGGCGAGCGGTGGGGAATTGGATTGTTAGGCCCAACG 1379
consensus_8683#1 ------------------------------------------------------------
consensus_8683#0 TGGCAATGGGCCCCGCACCCGTGTAAGTGGTGGGCCTCCTCCCCCGTGCCCGTGGGGCCG 1439
consensus_8683#1 ------------------------------------------------------------
consensus_8683#0 TCGCATAATGCGACATGATCTTGCACAATGGCTTCTCCGATGGCGACAAATCGTCGAGTG 1499
consensus_8683#1 ------------------------------------------------------------
consensus_8683#0 CGAGTGAGTGTGCTTCAGATAAGGAGGGGTGTACTGGCGTGCGTGCAAGCACTCTTCTCT 1559
consensus_8683#1 ------------------------------------------------------------
consensus_8683#0 ATAGTTCTCTTTTAGTATCACTGTTCATTGTTCATAAGCCGTGTGAGTGTAGCTTTGTGT 1619
consensus_8683#1 ------------------------------------------------------------
consensus_8683#0 TCATCTTCTCGTAAACCAAGTAAAAAGGGCAGGCTGGTACTCTGTTCTC 1668
consensus_8683#1 -------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||