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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8686#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1504 fasta sequence
[TTCAAGCAAAGCAAACTCAAGTAGTAGCTGATTACCAGCTCTTCTCTCTTCTCATTGAGAAGAGGGAATTAAGTTTTGATCTCTGCTTTATTGCCTGATCATCCTCTTGTTACTTG-CAAGCAAGAACAGTAGTGT-ACTGTGCCTCATTGATCTCCTCCCACCAAACTCTCTCTCTCTCTCTCATATTCCGAGCTAGCTAGTTAATCAAGATCTTGCTGCAATGGCTGGCATGTCTCTTCAGCATCCCTGGGCCTTCGCCTTTGGTCTCCTAGGCAACATCATCTCCTTCATGACCTACCTGGCCCCACTGCCGACGTTCTACAGGATCTACAAGAGCAAGTCGACGCAGGGGTTCCAGTCGGTACCCTACGTGGTGGCGCTGTTCAGCGCGATGCTGTGGATCTACTACGCGCTGCTCAAGTCCGACGAGTGCCTCCTCATCACCATCAACTCCGCTGGCTGCGTCATCGAGACCATCTACATC-GCCGTCTACCTCGTCTA-CGCCCCCAAGAAGGCCAAGATGTTCACCGCCAAGCTCCTCCTCCTCGTCAACGTCGGCGTCTTCGGCCTCATCCTCCTCCTCACCCTCCTCCTCTCCGCCGGCGACCGCCGCATCGTGGTTCTTGGTTGGGTCTGCGTTGGCTTCTCCGTCAGCGTCTTCGTCGCCCCCCTTAGCATCATCAGGCTGGTGGTGCGCACCAAGAGCGTGGAGTTCATGCCGTTCTCGCTCTCCTTCTCCCTCACCATCAGCGCCGTCGTCTGGTTCCTCTACGGCCTCCTCATCAAGGACAAATATGTCGCTCTTCCCAACGTGCTGGGCTTCTCCTTCGGCGTCATCCAGATGGGGCTGTACGCCATGTACAGGAACTCGACGCCCAAGGCCGTGCTGACCAAGGAGGTCGAGGCGGCGACGGCCACCGGCGACGACGACCACTCCGCCGCCGGCGTCAAGGAGCACGTCGTCAACATCGCCAAGCTCTCTGCCGCCGTCGACGTCGTCAAGACCCGCGAGGTGCACCCCGTCGACGTCGAGTCCCCGCCGGCAGAGGCGCCGCCTGAGGAGGACGACAAGGCCGCCGCCGCCACCGCCGCCGCCGTCGCCGGCGCCGGCGAGAAGAAGGTAGCTGCATGAGTG-CGTGCATGCGTACATGGGTCGCCGTAAGAAGG-AAGAAGGCGTGACGTGTCCAGCCCGTACGCGCGCCACGTGGCCAAGCTAGCTTCAGAGC-TAGTGAAGCTGCAGACATGCTAGCTGGCTAGCTAGCAGTGAGAGAGTGCGA-CGACTAAAAAAAAAGTAGTGATTAATTAAGGGCTTGTAATTTAATCGTTGTTTTTTTTTTTCTCTGTTTCGTTGAGATCGATATCGTTGTCACCATGCATGTATTTCGTTTTTGATTCTCAGTAATTAATTAGATGGGCTTTCTGTAATTCAACCTGTAAGGGTTCCTTCCATGATTAATTAATTAGCGTGTTAATAATTGTCCCNCCNAAAAAAAAAAAAAAAAAA]
[+] EMBL AK101913 [TTCAAGCAAAGCAAACTCAAGTAGTAGCTGATTACCAGCTCTTCTCTCTTCTCATTGAGAAGAGGGAATTAAGTTTTGATCTCTGCTTTATTGCCTGATCATCCTCTTGTTACTTG CAAGCAAGAACAGTAGTGT ACTGTGCCTCATTGATCTCCTCCCACCAAACTCTCTCTCTCTCTCTCATATTCCGAGCTAGCTAGTTAATCAAGATCTTGCTGCAATGGCTGGCATGTCTCTTCAGCATCCCTGGGCCTTCGCCTTTGGTCTCCTAGGCAACATCATCTCCTTCATGACCTACCTGGCCCCACTGCCGACGTTCTACAGGATCTACAAGAGCAAGTCGACGCAGGGGTTCCAGTCGGTACCCTACGTGGTGGCGCTGTTCAGCGCGATGCTGTGGATCTACTACGCGCTGCTCAAGTCCGACGAGTGCCTCCTCATCACCATCAACTCCGCTGGCTGCGTCATCGAGACCATCTACATC GCCGTCTACCTCGTCTA CGCCCCCAAGAAGGCCAAGATGTTCACCGCCAAGCTCCTCCTCCTCGTCAACGTCGGCGTCTTCGGCCTCATCCTCCTCCTCACCCTCCTCCTCTCCGCCGGCGACCGCCGCATCGTGGTTCTTGGTTGGGTCTGCGTTGGCTTCTCCGTCAGCGTCTTCGTCGCCCCCCTTAGCATCATCAGGCTGGTGGTGCGCACCAAGAGCGTGGAGTTCATGCCGTTCTCGCTCTCCTTCTCCCTCACCATCAGCGCCGTCGTCTGGTTCCTCTACGGCCTCCTCATCAAGGACAAATATGTCGCTCTTCCCAACGTGCTGGGCTTCTCCTTCGGCGTCATCCAGATGGGGCTGTACGCCATGTACAGGAACTCGACGCCCAAGGCCGTGCTGACCAAGGAGGTCGAGGCGGCGACGGCCACCGGCGACGACGACCACTCCGCCGCCGGCGTCAAGGAGCACGTCGTCAACATCGCCAAGCTCTCTGCCGCCGTCGACGTCGTCAAGACCCGCGAGGTGCACCCCGTCGACGTCGAGTCCCCGCCGGCAGAGGCGCCGCCTGAGGAGGACGACAAGGCCGCCGCCGCCACCGCCGCCGCCGTCGCCGGCGCCGGCGAGAAGAAGGTAGCTGCATGAGTG CGTGCATGCGTACATGGGTCGCCGTAAGAAGG AAGAAGGCGTGACGTGTCCAGCCCGTACGCGCGCCACGTGGCCAAGCTAGCTTCAGAGC TAGTGAAGCTGCAGACATGCTAGCTGGCTAGCTAGCAGTGAGAGAGTGCGA CGACTAAAAAAAAAGTAGTGATTAATTAAGGGCTTGTAATTTAATCGTTGTTTTTTTTTTTCTCTGTTTCGTTGAGATCGATATCGTTGTCACCATGCATGTATTTCGTTTTTGATTCTCAGTAATTAATTAGATGGGCTTTCTGTAATTCAACCTGTAAGGGTTCCTTCCATGATTAATTAATTAGCGTGTTAATAA ]
[+] EMBL OSC630 [ TTGACAAGCAAGAACAGTAGTGTNACTGTGCCTCATTGATCTCCTCCCACCAAACTCTCTCTCTCTCTCTCATATTCCGAGCTAGCTAGTTAATCAAGATCTTGCTGCAATGGCTGGCATGTCTCTTCAGCATCCCTGGGCCTTCGCCTTTGGTCTCCTAGGCAACATCATCTCCTTCATGACCTACCTGGCCCCACTGCCGACGTTCTACAGGATCTACAAGAGCAAGTCGACGCAGGGGTTCCAGTCGGTACCCTACGTGGTGGCGCTGTTCAG GGGATGCTGTGGATCTACTACGCGCTGCTCAAGTCCGACGAGTGCCTCCTCATCANCATCAACTCCGCTGGCTGCGTAATCGAGACCATCTACATCGGCCGTCTACCTCGTCTANGGCCCCAAAGAAGGCCAAGATGTTCACCGCAAAGGTCCTCn ]
[+] EMBL AU182608 [ AGTGNCGTGCATGCGTACATGGGTCNCCGTAAAAAGGAAAAAAGGCGTGACGTGTCCAGCCCGTACGCGCGCCACGTGGCCAAGCTAGCTTNAGAGCNTAGTGAAGCTGCAGACATGCTAGNTGGCTAGCTAGCAGTGANAGAGTGCGACCGACTAAAAAAAAAGTAGTGATTAATTAAGGGCTTGTAATTTAATCGTTG TTTTTTTTTTCTCTGTTTCGTTGAGATCGATATCGTTGTCNCCATGCATGTATTTCGTTTTTGATTCTCAGTAATTAATTAGATGGGCTTTCTGTAATTCAACCTGTAAGGGTTCCTTCCATGATTAATTAATTAGCGTGTTAATAATTGTCCCNCCNAAAAAAAAAAAAAAAAAA]
consensusID : consensus_8686#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 686 fasta sequence
[ACTCTTCTTCAGAGCTCTCCCTTCCCTCCACAAAGGGGGTCTAGGGTTAGAGTGTGTGTGTCTGTGACAAGTTCCAAGCTAGCAACAACAAGCTCAATTCCTTGCTTGTTTGCTTCCATATTACACTACATCTCTTCCCTTCAATTACCCCCCTTTTAGCACACAAAAATGGCTGGCCTGTCCCTGCAGCATCCCTGGGCTTTTGCCTTCGGCCTCCTTGGCAACCTCATATCCTTCACGACCTATCTGGCACCAATCCCGACGTTCTACCGGATCTACAAGAGCAAGTCGACGGAGGGGTTCCAGTCGGTGCCGTACGTGGTGGCGCTCTTCAGCGCCATGCTGTGGATCTTCTACGCGCTGATCAAGTCCAACGAGGCCCTCCTCATCACCATCAACGCCGCCGGTTGCGTCATCGAGACCATCTACATCGTCATGTACCTCGCCTACGCCCCCAAGAAGGCCAAGGTGTTCACGACGAAGATCCTGCTGCTGCTGAACGTGGGGGTGTTCGGGGTGATCCTGCTGCTGACGCTGCTGCTCTCCCATGGCGAGCAGCGCGTCGTCTCCCTCGGCTGGGTCTGCGTCGCCTTCTCCGTCAGCGTCTTTGTCGCGCCGCTCAGCATCATCAAGCGAGTGATCCAGTCGAGGAGCGTGGAGTACATGCCCTTCTCCCTCTCCCTCAC]
[+] EMBL CB647390 [ACTCTTCTTCAGAGCTCTCCCTTCCCTCCACAAAGGGGGTCTAGGGTTAGAGTGTGTGTGTCTGTGACAAGTTCCAAGCTAGCAACAACAAGCTCAATTCCTTGCTTGTTTGCTTCCATATTACACTACATCTCTTCCCTTCAATTACCCCCCTTTTAGCACACAAAAATGGCTGGCCTGTCCCTGCAGCATCCCTGGGCTTTTGCCTTCGGCCTCCTTGGCAACCTCATATCCTTCACGACCTATCTGGCACCAATCCCGACGTTCTACCGGATCTACAAGAGCAAGTCGACGGAGGGGTTCCAGTCGGTGCCGTACGTGGTGGCGCTCTTCAGCGCCATGCTGTGGATCTTCTACGCGCTGATCAAGTCCAACGAGGCCCTCCTCATCACCATCAACGCCGCCGGTTGCGTCATCGAGACCATCTACATCGTCATGTACCTCGCCTACGCCCCCAAGAAGGCCAAGGTGTTCACGACGAAGATCCTGCTGCTGCTGAACGTGGGGGTGTTCGGGGTGATCCTGCTGCTGACGCTGCTGCTCTCCCATGGCGAGCAGCGCGTCGTCTCCCTCGGCTGGGTCTGCGTCGCCTTCTCCGTCAGCGTCTTTGTCGCGCCGCTCAGCATCATCAAGCGAGTGATCCAGTCGAGGAGCGTGGAGTACATGCCCTTCTCCCTCTCCCTCAC]
consensusID : consensus_8686#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 369 fasta sequence
[GCCGGGCGTCAAGGACACGTCGTCTACATCGCCAAGCTTTCTGCCCCGTGGACGTCGTCAAGACCCGCCGAGGGTGCACCCCGTCGACGTCGAGTCCCCCCCGGCAGAGGCGCCCCCCCAGGAGGACGACAAGGCCGCCGCCACCGCCGCCGCCGGTAGTCCGGCCCCGGCGAGAAGAAGGTAGCGGCAATGAGTGCGTGCATGCGTACCTGGGTCCCCGTAAGAAGGAAGAAGGCGTGACGTGTCCAGCCCGTACGCGCGCCACCGTGGCCCAGCTAGCTTCAGAGCTAGTGAAGCTGCAGACATGCTAGCTGGCTAGCTACCCGTGAGAGATTGCGACGACTATAAAGAAAAAATTAGTGATTAATT]
[+] EMBL BI809654 [GCCGGGCGTCAAGGACACGTCGTCTACATCGCCAAGCTTTCTGCCCCGTGGACGTCGTCAAGACCCGCCGAGGGTGCACCCCGTCGACGTCGAGTCCCCCCCGGCAGAGGCGCCCCCCCAGGAGGACGACAAGGCCGCCGCCACCGCCGCCGCCGGTAGTCCGGCCCCGGCGAGAAGAAGGTAGCGGCAATGAGTGCGTGCATGCGTACCTGGGTCCCCGTAAGAAGGAAGAAGGCGTGACGTGTCCAGCCCGTACGCGCGCCACCGTGGCCCAGCTAGCTTCAGAGCTAGTGAAGCTGCAGACATGCTAGCTGGCTAGCTACCCGTGAGAGATTGCGACGACTATAAAGAAAAAATTAGTGATTAATT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8686#0 TTCAAGCAAAGCAAACTCAAGTAGTAGCTGATTACCAGCTCTTCTCTCTTCTCATTGAGA 60
consensus_8686#2 ------------------------------------------------------------
consensus_8686#1 ------------------------------------------------------------
consensus_8686#0 AGAGGGAATTAAGTTTTGATCTCTGCTTTATTGCCTGATCATCCTCTTGTTACTTGCAAG 120
consensus_8686#2 ------------------------------------------------------------
consensus_8686#1 ------------------------------------------------------------
consensus_8686#0 CAAGAACAGTAGTGTACTGTGCCTCATTGATCTCCTCCCACCAAACTCTCTCTCTCTCTC 180
consensus_8686#2 ------------------------------------------------------------
consensus_8686#1 ------------------------------------------------------------
consensus_8686#0 TCATATTCCGAGCTAGCTAGTTAATCAAGATCTTGCTGCAATGGCTGGCATGTCTCTTCA 240
consensus_8686#2 ------------------------------------------------------------
consensus_8686#1 ------------------------------------------------------------
consensus_8686#0 GCATCCCTGGGCCTTCGCCTTTGGTCTCCTAGGCAACATCATCTCCTTCATGACCTACCT 300
consensus_8686#2 ------------------------------------------------------------
consensus_8686#1 ------------------------------------------------------------
consensus_8686#0 GGCCCCACTGCCGACGTTCTACAGGATCTACAAGAGCAAGTCGACGCAGGGGTTCCAGTC 360
consensus_8686#2 ------------------------------------------------------------
consensus_8686#1 ------------------------------------------------------------
consensus_8686#0 GGTACCCTACGTGGTGGCGCTGTTCAGCGCGATGCTGTGGATCTACTACGCGCTGCTCAA 420
consensus_8686#2 ------------------------------------------------------------
consensus_8686#1 ------------------------------------------------------------
consensus_8686#0 GTCCGACGAGTGCCTCCTCATCACCATCAACTCCGCTGGCTGCGTCATCGAGACCATCTA 480
consensus_8686#2 ------------------------------------------------------------
consensus_8686#1 ------------------------------------------------------------
consensus_8686#0 CATCGCCGTCTACCTCGTCTACGCCCCCAAGAAGGCCAAGATGTTCACCGCCAAGCTCCT 540
consensus_8686#2 ------------------------------------------------------------
consensus_8686#1 ------------------------------------------------------------
consensus_8686#0 CCTCCTCGTCAACGTCGGCGTCTTCGGCCTCATCCTCCTCCTCACCCTCCTCCTCTCCGC 600
consensus_8686#2 ------------------------------------------------------------
consensus_8686#1 ------------------------------------------------------------
consensus_8686#0 CGGCGACCGCCGCATCGTGGTTCTTGGTTGGGTCTGCGTTGGCTTCTCCGTCAGCGTCTT 660
consensus_8686#2 ------------------------------------------------------------
consensus_8686#1 ------------------------------------------------------------
consensus_8686#0 CGTCGCCCCCCTTAGCATCATCAGGCTGGTGGTGCGCACCAAGAGCGTGGAGTTCATGCC 720
consensus_8686#2 ------------------------------------------------------------
consensus_8686#1 ------------------------------------------------------------
consensus_8686#0 GTTCTCGCTCTCCTTCTCCCTCACCATCAGCGCCGTCGTCTGGTTCCTCTACGGCCTCCT 780
consensus_8686#2 ------------------------------------------------------------
consensus_8686#1 ------------------------------------------------------------
consensus_8686#0 CATCAAGGACAAATATGTCGCTCTTCCCAACGTGCTGGGCTTCTCCTTCGGCGTCATCCA 840
consensus_8686#2 ------------------------------------------------------------
consensus_8686#1 ------ACTCTTCTTCAGAGCTCTCCCTTCCCTCCACAAAGGGGGTCTAGGGTTAGAGTG 54
consensus_8686#0 GATGGGGCTGTACGCCATGTACAGGAACTCGACGCCCAAGGCCGTGCTGACCAAGGAGGT 900
consensus_8686#2 ------------------------------------------------------------
consensus_8686#1 TGTGTGTCTGTGACAAGTTCCAAGCTAGCAACAACAAGCTCAATTCCTTGCTTGTTTGCT 114
consensus_8686#0 CGAGGCGGCGACGGCCACCGGCGACGACGACCACTCCGCCGCCGGCGTCAAGGAGCACGT 960
consensus_8686#2 -------------------------------------GCCG--GGCGTCAAGGA-CACGT 20
consensus_8686#1 TCCATATTACACTACATCTCTTCCCTTCAATTACCCCCCTTTTAGCACACAAAAATGGCT 174
* ** * * *
consensus_8686#0 CGTCAACATCGCCAAGCTCTCTG-----CCGCCGTCGACGTCGTCAAGACCCGC--GAGG 1013
consensus_8686#2 CGTCTACATCGCCAAGCTTTCTG-----CC-CCGTGGACGTCGTCAAGACCCGCCGAGGG 74
consensus_8686#1 GGCCTGTCCCTGCAGCATCCCTGGGCTTTTGCCTTCGGCCTCCTTGGCAACCTCATATCC 234
* * * ** * *** ** * * * ** * * ** *
consensus_8686#0 TGCAC--CCCGTC-GACGTCGAGTCCCCGCCGGCAGAGGCGCCGCCTGAGGAGGACGACA 1070
consensus_8686#2 TGCAC--CCCGTC-GACGTCGAGTCCCCCCCGGCAGAGGCGCCCCCCCAGGAGGACGACA 131
consensus_8686#1 TTCACGACCTATCTGGCACCAATCCCGACGTTCTACCGGATCTACAAGAGCAAGTCGACG 294
* *** ** ** * * * * ** * ** * * ** * * ****
consensus_8686#0 AGGCCGCCGCCGCCACCGCCGCCGCCGTCGCCGGCGCCGGCGAGAAGAAGGTAGCTGCA- 1129
consensus_8686#2 AGGCCGCCGCCACCGCCGCCGCCGGTAGT-CCGGCCCCGGCGAGAAGAAGGTAGCGGCAA 190
consensus_8686#1 GAGGGGTTCCAGTCGGTGCCGTACGTGGTGGCGCTCTTCAGCGCCATGCTGTGGATCTTC 354
* * * * **** ** * ** *
consensus_8686#0 TGAGTGC-GTGCATGCGTACATGGGTCGCCGTAAGAAGGAAGAAGGC-----GTGACGT- 1182
consensus_8686#2 TGAGTGC-GTGCATGCGTACCTGGGTCCCCGTAAGAAGGAAGAAGGC-----GTGACGT- 243
consensus_8686#1 TACGCGCTGATCAAGTCCAACGAGGCCCTCCTCATCACCATCAACGCCGCCGGTTGCGTC 414
* * ** * ** * * ** * * * * * * ** ** ** ***
consensus_8686#0 GTCCAGCCCGTACGCG-CGCCAC-GTGGCCAAGCTA-GCTTCAGAGCTAGTGAAGCTGCA 1239
consensus_8686#2 GTCCAGCCCGTACGCG-CGCCACCGTGGCCCAGCTA-GCTTCAGAGCTAGTGAAGCTGCA 301
consensus_8686#1 ATCGAGACCATCTACATCGTCAT-GTACCTCGCCTACGCCCCCAAGAAGGCCAAGGTGTT 473
** ** ** * * ** ** ** * *** ** * ** * *** **
consensus_8686#0 GACATGCTAG--CTGGCTA--GCTAGCAGTGAGAGA--GTGCGACGACTA---AAAAAAA 1290
consensus_8686#2 GACATGCTAG--CTGGCTA--GCTACCCGTGAGAGA--TTGCGACGACTATAAAGAAAAA 355
consensus_8686#1 CACGACGAAGATCCTGCTGCTGCTGAACGTGGGGGTGTTCGGGGTGATCCTGCTGCTGAC 533
** ** * *** *** *** * * * * ** *
consensus_8686#0 AGTAGTGATTAATTAAGGGCTTGTAATTTAATCGTTGTTTTTTTTTTTCTCTGTTTCGTT 1350
consensus_8686#2 ATTAGTGATTAATT---------------------------------------------- 369
consensus_8686#1 GCTGCTGCTCTCCCATGGCGAGCAGCGCGTCGTCTCCCTCGGCTGGGTCTGCGTCGCCTT 593
* ** *
consensus_8686#0 GAGATCGATATCGTTGTCACCATGCATGTATTTCGTTTTTGATTCTCAGTAATTAATTAG 1410
consensus_8686#2 ------------------------------------------------------------
consensus_8686#1 CTCCGTCAGCGTCTTTGTCGCGCCGCTCAGCATCATCAAGCGAGTGATCCAGTCGAGGAG 653
consensus_8686#0 ATGGGCTTTCTGTAATTCAACCTGTAAGGGTTCCTTCCATGATTAATTAATTAGCGTGTT 1470
consensus_8686#2 ------------------------------------------------------------
consensus_8686#1 CGTGGAGTACATGCCCTTCTCCCTCTCCCTCAC--------------------------- 686
consensus_8686#0 AATAATTGTCCCNCCNAAAAAAAAAAAAAAAAAA 1504
consensus_8686#2 ----------------------------------
consensus_8686#1 ----------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||