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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8689#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1520 fasta sequence
[GCCATGGCGCCTGCAAGCGACCGGAATGGCCACGAAGGCCGCCGCCGCGTGCTGCTGCTCCCGCTGCCATACCACGGCCACATCAACCCCATGCTCCGCCTCGCCGCCGCGCTGCACGACCGCGGCCTCGCCGTCACCGTCGTCCACACGGAGACGCGCGCGCCCGACCGCCGGAGCCTCCCCGCCGGGTGCGAGCTGGTGACCGTGCCGGACGGCCTCCCGCCGGAGCTGGCCGCGTCCGGCGACATCCCGTCGTTCGTGTTCGCGCTGAACAGGAACTGCGCGGCGCCGTTCCGTGACCTCCTCGCCGGCGCGCTCCGGCAGGAGGAGGAGGAGGAGGACGGCGGCGGCGTCGCGTGCGTGGTCGCCGACGTCGACTGGTTCGCGCCGCTCGCCGCGGCGAGGGAGCTCGGCGTGCCGGCGCTGGCGCTGATGACCAGCAGCGCGGCGAGGTTCAGGGTGTACCTGGCGTACCCTCGGCTGTGTGAAAAGGGATATTTACCTGTCCAAGAGTCAAATCTGGACATGCCAGTGGACAAGCATCCGCCGTTGTTGGTGCGAGACCTCCACATCATGATGGACACGTCTCGGCACGTCGCCTACGCCAGCCTGCTCGCCCACATCGTCGCCGGTGTCCGCCAATCCTCTGGTCTAATCCTCAACACCTTCAACGCCATCGAGCGCACCGACGTCGAGCAGATCCGGCGCGACACCGCCATCCCAGTGTTCCCCGTTGGCCCCCTCCACATGCTCTCGCCACCAGCGACGGTGGCGACGCAGAAAAGCAGCCTGCTCCTCGAGGACCGCAGCTGCCTGGAATGGCTGAACACGCAGCTCCCAGGCTCCGTGCTGTTCGTCAGCTTCGGCACCCTCGTCTCCATTGACGCCGACGAGCTCTTGGAGGTGGCTTGGGGCCTCGCTGCCAGCAACCGGCCGTTCCTGTGGGTGGTCCGGCCAAGGCTGGTCCGTGGGCGCGACTCCGTCGAGCTCCCCAGCGAGCTGCTCGAGGAGACACGTGGCAGAGGGAGGATCATCAGGTGGGCACCACAAGAGGAGGTCCTGAGCCACCCCGCTATAGGCGCGTTTTTTGACACACTGTGGGTGGAACTCGACGCTGGAGAGCATATCCAGGACCGTGCCGATGATATGCAAGCCATGTGGCGGTGACCAGTTAGGGACGGCGAGGTATGTATGTGACATGTGGAAGGTGGGTGTTAGGGTTGAGGTCGAGGATAAGCTGACCAGAGGGGGAATACAGGCAGCGATTGAGAGGTTGATGGATGGGATAGAGGGTGGAGTAGTTAGAGATAGGATGAGAGAGATGGGTGATGTCGTGTCAAAATGCACTACGAAAGGTGGTTCTTCTGATTTAGCCCTACAGGACTTGGTTGACTTTATCAAGTCGTCCTAGAAATTATTTCTAGCATTAAAATTTTAGTGAACATTTTTCTGCGACAATTATTCTTATGAATTTATCGCATTTGGTNATTGGCAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AK069996 [GCCATGGCGCCTGCAAGCGACCGGAATGGCCACGAAGGCCGCCGCCGCGTGCTGCTGCTCCCGCTGCCATACCACGGCCACATCAACCCCATGCTCCGCCTCGCCGCCGCGCTGCACGACCGCGGCCTCGCCGTCACCGTCGTCCACACGGAGACGCGCGCGCCCGACCGCCGGAGCCTCCCCGCCGGGTGCGAGCTGGTGACCGTGCCGGACGGCCTCCCGCCGGAGCTGGCCGCGTCCGGCGACATCCCGTCGTTCGTGTTCGCGCTGAACAGGAACTGCGCGGCGCCGTTCCGTGACCTCCTCGCCGGCGCGCTCCGGCAGGAGGAGGAGGAGGAGGACGGCGGCGGCGTCGCGTGCGTGGTCGCCGACGTCGACTGGTTCGCGCCGCTCGCCGCGGCGAGGGAGCTCGGCGTGCCGGCGCTGGCGCTGATGACCAGCAGCGCGGCGAGGTTCAGGGTGTACCTGGCGTACCCTCGGCTGTGTGAAAAGGGATATTTACCTGTCCAAGAGTCAAATCTGGACATGCCAGTGGACAAGCATCCGCCGTTGTTGGTGCGAGACCTCCACATCATGATGGACACGTCTCGGCACGTCGCCTACGCCAGCCTGCTCGCCCACATCGTCGCCGGTGTCCGCCAATCCTCTGGTCTAATCCTCAACACCTTCAACGCCATCGAGCGCACCGACGTCGAGCAGATCCGGCGCGACACCGCCATCCCAGTGTTCCCCGTTGGCCCCCTCCACATGCTCTCGCCACCAGCGACGGTGGCGACGCAGAAAAGCAGCCTGCTCCTCGAGGACCGCAGCTGCCTGGAATGGCTGAACACGCAGCTCCCAGGCTCCGTGCTGTTCGTCAGCTTCGGCACCCTCGTCTCCATTGACGCCGACGAGCTCTTGGAGGTGGCTTGGGGCCTCGCTGCCAGCAACCGGCCGTTCCTGTGGGTGGTCCGGCCAAGGCTGGTCCGTGGGCGCGACTCCGTCGAGCTCCCCAGCGAGCTGCTCGAGGAGACACGTGGCAGAGGGAGGATCATCAGGTGGGCACCACAAGAGGAGGTCCTGAGCCACCCCGCTATAGGCGCGTTTTTTGACACACTGTGGGTGGAACTCGACGCTGGAGAGCATATCCAGGACCGTGCCGATGATATGCAAGCCATGTGGCGGTGACCAGTTAGGGACGGCGAGGTATGTATGTGACATGTGGAAGGTGGGTGTTAGGGTTGAGGTCGAGGATAAGCTGACCAGAGGGGGAATACAGGCAGCGATTGAGAGGTTGATGGATGGGATAGAGGGTGGAGTAGTTAGAGATAGGATGAGAGAGATGGGTGATGTCGTGTCAAAATGCACTACGAAAGGTGGTTCTTCTGATTTAGCCCTACAGGACTTGGTTGACTTTATCAAGTCGTCCTAGAAATTATTTCTAGCATTAAAATTTTAGTGAACATTTTTCTGCGACAATTATTCTTATGAATTTATCGCATTT ]
[+] EMBL CF313296 [ acggtATGACAGTGGACAAGCATCCGCCGTTGTTGGTGCGAGACCTCCACATCATGATGGACACGTCTCGGCACGTCGCCTACGCCAGCCTGCTCGCCCACATCGTCGCCGGTGTCCGCCAATCCTCTGGTCTAATCCTCAACACCTTCAACGCCATCGAGCGCACCGACGTCGAGCAGATCCGGCGCGACACCGCCATCCCAGTGTTCCCCGTTGGCCCCCTCCACATGCTCTCGCCACCAGCGACGGTGGCGACGCAGAAAAGCAGCCTGCTCCTCGAGGACCGCAGCTGCCTGGAATGGCTGAACACGCAGCTCCCAGGCTCCGTGCTGTTCGTCAGCTTCGGCACCCTCGTCTCCATTGACGCCGACGAGCTCTTGGAGGTGGCTTGGGGCCTCGCTGCCAGCAACCGGCCGTTCCTGTGGGTGGTCCGGCCAAGGCTGGTCCGTGGGCGCGACTCCGTCGAGCTCCCCAGCGAGCTGCTCGAGGAGACACGTGGCGGAGGGAGGATCACCAGGTGGGCACCACAAGAGGAGGTCCTGAGCCACCCCGCTATAGGCGCG TTTTTGACACACTGTGGGTGGAACTCGACGCTGGAGAGCATATCCAGGACCGTGCCGATGATATG ]
[+] EMBL AU057409 [ TGGGTGGAACTCGACGCTGGAGAGCATATCCAGGACCGTNCCGATGATATGCAAGCCATNTGGCGGTGACCAGTTAGGGACGGCGAGGTATGTATGTGACATGTGGAAGGTGGGTGTTAGGGTTGAGGTCGAGGATAAGCTGACCAGAGGGGGAATACAGGCAGCGATTGAGAGGTTGATGGATGGGATAGAGGGTGGAGTAGTTAGAGATAGGATGAGAGAGATGGGTGATGNCGTGTCAAAATGCACTACGAAAGGTGGTTCTTCTGATTTAGCCCTACAGGACTTGGTTGACTTTATCAAGTCGTCCTAGAAATTATTTCTAGCATTAAAATTTTAGTGAACATTTTTCTGCGACAATTATTCTTATGAATTTATCGCATTTGGTNATTGGCAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[-] EMBL AW070175 [ gcCGAGGTATGTATGTGACATGTGGAAGGTGGGTGTTAGGGTTGAGGTCGAGGATAAGCTGACCAGAGGGGGAATACAGGCAGCGATTGAGAGGTTGATGGATGGGATAAAGGGTGGAGTAGTTAGAGATAGGATGAGAGAGATGGGTGATGTCGTGTCAAAATGCACTACGAAAGGTGGTTTTTCTGATTTAGCCCTACAGGACTTGGTTGACTTTATCAAGTCGTCCTAGAAATTATTTCTAGCATTAAAATTTTAGTGAACATTTTTTTGCGACAATTATTCTTATGAATTTATCGCATTTGGT ]
consensusID : consensus_8689#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 476 fasta sequence
[TTGTGGGTGGAAACTCGACCTGGAGAATATCCAGGACCGGTGCCGATGATATGCAACCATGTGCGGTGACCAGTTAGGGACGGCGAGGTATGTATGTGACATGGTGGAAGGTGGGTGTTAGGTTGAGGTCGAGGATAAGCTGACCAGAGGGGGAATACAGGCAGCGATTGAGAGGTTGATGGATGGGATAGAGGGTGGAGTAGTTAGAGATAGGATGAGAGAGATGGGTGATGTCGTGTCAAATGCACTACGAAAGGTGGTTCTTCTGATTTAGCCCTACAGGACTTGGTTGACTTTATCAAGTCGTCCTAGAAATTATTTCTAGCATTAAAATTTTAGTGAACATTTTTCTGCGACAATTATTCTTATGAATTTATCGCATTTGGTAATTGGCACATGAAAATGTCTTACACACCACTTGTATTAAGCTCAGCCCAGGATTTGGAACCTCATCTAGAAACATTTCACATCAAAAA]
[+] EMBL BI809258 [TTGTGGGTGGAAACTCGACCTGGAGAATATCCAGGACCGGTGCCGATGATATGCAACCATGTGCGGTGACCAGTTAGGGACGGCGAGGTATGTATGTGACATGGTGGAAGGTGGGTGTTAGGTTGAGGTCGAGGATAAGCTGACCAGAGGGGGAATACAGGCAGCGATTGAGAGGTTGATGGATGGGATAGAGGGTGGAGTAGTTAGAGATAGGATGAGAGAGATGGGTGATGTCGTGTCAAATGCACTACGAAAGGTGGTTCTTCTGATTTAGCCCTACAGGACTTGGTTGACTTTATCAAGTCGTCCTAGAAATTATTTCTAGCATTAAAATTTTAGTGAACATTTTTCTGCGACAATTATTCTTATGAATTTATCGCATTTGGTAATTGGCACATGAAAATGTCTTACACACCACTTGTATTAAGCTCAGCCCAGGATTTGGAACCTCATCTAGAAACATTTCACATCAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8689#0 GCCATGGCGCCTGCAAGCGACCGGAATGGCCACGAAGGCCGCCGCCGCGTGCTGCTGCTC 60
consensus_8689#1 ------------------------------------------------------------
consensus_8689#0 CCGCTGCCATACCACGGCCACATCAACCCCATGCTCCGCCTCGCCGCCGCGCTGCACGAC 120
consensus_8689#1 ------------------------------------------------------------
consensus_8689#0 CGCGGCCTCGCCGTCACCGTCGTCCACACGGAGACGCGCGCGCCCGACCGCCGGAGCCTC 180
consensus_8689#1 ------------------------------------------------------------
consensus_8689#0 CCCGCCGGGTGCGAGCTGGTGACCGTGCCGGACGGCCTCCCGCCGGAGCTGGCCGCGTCC 240
consensus_8689#1 ------------------------------------------------------------
consensus_8689#0 GGCGACATCCCGTCGTTCGTGTTCGCGCTGAACAGGAACTGCGCGGCGCCGTTCCGTGAC 300
consensus_8689#1 ------------------------------------------------------------
consensus_8689#0 CTCCTCGCCGGCGCGCTCCGGCAGGAGGAGGAGGAGGAGGACGGCGGCGGCGTCGCGTGC 360
consensus_8689#1 ------------------------------------------------------------
consensus_8689#0 GTGGTCGCCGACGTCGACTGGTTCGCGCCGCTCGCCGCGGCGAGGGAGCTCGGCGTGCCG 420
consensus_8689#1 ------------------------------------------------------------
consensus_8689#0 GCGCTGGCGCTGATGACCAGCAGCGCGGCGAGGTTCAGGGTGTACCTGGCGTACCCTCGG 480
consensus_8689#1 ------------------------------------------------------------
consensus_8689#0 CTGTGTGAAAAGGGATATTTACCTGTCCAAGAGTCAAATCTGGACATGCCAGTGGACAAG 540
consensus_8689#1 ------------------------------------------------------------
consensus_8689#0 CATCCGCCGTTGTTGGTGCGAGACCTCCACATCATGATGGACACGTCTCGGCACGTCGCC 600
consensus_8689#1 ------------------------------------------------------------
consensus_8689#0 TACGCCAGCCTGCTCGCCCACATCGTCGCCGGTGTCCGCCAATCCTCTGGTCTAATCCTC 660
consensus_8689#1 ------------------------------------------------------------
consensus_8689#0 AACACCTTCAACGCCATCGAGCGCACCGACGTCGAGCAGATCCGGCGCGACACCGCCATC 720
consensus_8689#1 ------------------------------------------------------------
consensus_8689#0 CCAGTGTTCCCCGTTGGCCCCCTCCACATGCTCTCGCCACCAGCGACGGTGGCGACGCAG 780
consensus_8689#1 ------------------------------------------------------------
consensus_8689#0 AAAAGCAGCCTGCTCCTCGAGGACCGCAGCTGCCTGGAATGGCTGAACACGCAGCTCCCA 840
consensus_8689#1 ------------------------------------------------------------
consensus_8689#0 GGCTCCGTGCTGTTCGTCAGCTTCGGCACCCTCGTCTCCATTGACGCCGACGAGCTCTTG 900
consensus_8689#1 ------------------------------------------------------------
consensus_8689#0 GAGGTGGCTTGGGGCCTCGCTGCCAGCAACCGGCCGTTCCTGTGGGTGGTCCGGCCAAGG 960
consensus_8689#1 ------------------------------------------------------------
consensus_8689#0 CTGGTCCGTGGGCGCGACTCCGTCGAGCTCCCCAGCGAGCTGCTCGAGGAGACACGTGGC 1020
consensus_8689#1 ------------------------------------------------------------
consensus_8689#0 AGAGGGAGGATCATCAGGTGGGCACCACAAGAGGAGGTCCTGAGCCACCCCGCTATAGGC 1080
consensus_8689#1 ------------------------------------------------------------
consensus_8689#0 GCGTTTTTTGACACACTGTGGGTGGAA-CTCGACGCTGGAGAGCATATCCAGGACCG-TG 1138
consensus_8689#1 ---------------TTGTGGGTGGAAACTCGAC-CTGGAGA--ATATCCAGGACCGGTG 42
*********** ****** ******* ************* **
consensus_8689#0 CCGATGATATGCAAGCCATGTGGCGGTGACCAGTTAGGGACGGCGAGGTATGTATGTGAC 1198
consensus_8689#1 CCGATGATATGCAA-CCATGTG-CGGTGACCAGTTAGGGACGGCGAGGTATGTATGTGAC 100
************** ******* *************************************
consensus_8689#0 ATG-TGGAAGGTGGGTGTTAGGGTTGAGGTCGAGGATAAGCTGACCAGAGGGGGAATACA 1257
consensus_8689#1 ATGGTGGAAGGTGGGTGTTAGG-TTGAGGTCGAGGATAAGCTGACCAGAGGGGGAATACA 159
*** ****************** *************************************
consensus_8689#0 GGCAGCGATTGAGAGGTTGATGGATGGGATAGAGGGTGGAGTAGTTAGAGATAGGATGAG 1317
consensus_8689#1 GGCAGCGATTGAGAGGTTGATGGATGGGATAGAGGGTGGAGTAGTTAGAGATAGGATGAG 219
************************************************************
consensus_8689#0 AGAGATGGGTGATGTCGTGTCAAAATGCACTACGAAAGGTGGTTCTTCTGATTTAGCCCT 1377
consensus_8689#1 AGAGATGGGTGATGTCGTGTCAAA-TGCACTACGAAAGGTGGTTCTTCTGATTTAGCCCT 278
************************ ***********************************
consensus_8689#0 ACAGGACTTGGTTGACTTTATCAAGTCGTCCTAGAAATTATTTCTAGCATTAAAATTTTA 1437
consensus_8689#1 ACAGGACTTGGTTGACTTTATCAAGTCGTCCTAGAAATTATTTCTAGCATTAAAATTTTA 338
************************************************************
consensus_8689#0 GTGAACATTTTTCTGCGACAATTATTCTTATGAATTTATCGCATTTGGTNATTGGCAAAA 1497
consensus_8689#1 GTGAACATTTTTCTGCGACAATTATTCTTATGAATTTATCGCATTTGGTAATTGGCACAT 398
************************************************* ******* *
consensus_8689#0 AAAAAAAAAAAAAAAAAAAAAAA------------------------------------- 1520
consensus_8689#1 GAAAATGTCTTACACACCACTTGTATTAAGCTCAGCCCAGGATTTGGAACCTCATCTAGA 458
**** * * * *
consensus_8689#0 ------------------
consensus_8689#1 AACATTTCACATCAAAAA 476
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||