These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8691#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1630 fasta sequence [CCTCCAGTCCTCCTCGGCCTTTCCCCCCGCCACAAAACCCTAGAGCGCGAATGGGGCGGCAGGTGCGCAAGCACGAGGGCTCGCACGGCAAGGTGGACGCGCCGCCGCCGAAGAAGCCGAGGAGCACCGAGCGGCCATTGGCACCGCTCGCCGCCGCCACGACGACCGCCAAGCCAAGGCGTGACGTGGTGAGACCCGCGGCGAGGAAATCCTCGGCTTCGAGCGATCGCGGCCCCGTCGCCCCCGGCAGCGACCTCGAGACGGAAGATTCAGATGGTCTTGGCTGCTTGACCCCTGACAGCACGAAAGCTACGCTTCAGCAGGATGATTATGGGAAAGGGGAGTACTCTCCGGGTGTGGTTCTATCTAAGACTGGTATGTTTAGGTTTGCCGGTTCTGTTGCTTTTGTGTTAATCATATTTAGTTTCCTTGCTGAGTTTTGAAAATTCTCCTTTTTATGAGGGAGATTCTGTGGTGAAGATGGCAGTAGCTGATGTACAGGACCTGCCTGTTGAAGATTTGAGGGATAATGAAGTGATCACTGTGGATAGTGAAGGCCCTGGCAAGCCTCTCCAGTCAATTCCCCTTGTTCAAGACAAGGATGCAATACAACTTGCGAGAACTTTTGTCAATGAGAAAGTCAAAGAGCTAATGGAAGGTGTCTCAGAGCCAGGAGTCCTGCAGAGTCGTTTGTCTAAAATCACCTCATTCCTTGTTCAGGCCACCTCTATAGCTGCCGGCCTCCATGATGAAGTCCCTCTACAAATACGTGGACAAACTGCTGCTTTGGTGACCCAAATCTCAGGGCTTGAGCAGCAGGTGGAGGAGCTGTCCAAGAAGCTGTGTAGCACTGAGGATGAGCTTGAGGTGACCAATGCAATGTTGAAAGAGACCCAGGCTGCCATGCTAGAGGCACAATCAGACCGAGCGACCGCCATTACTGCCATGAACAGCCTTGCCATGCGCATGGGAGCTTCATTCGCTAGGCTGGGCACAATACTGGACCCCCCACCCAATGCGGCTGACTCTCTGGAGAAGAGCATTAAGCAGATGACAGCCCTCGTGTCTCTCCTCGGCCCTGTGTCTCACAGCCATAGCTTGAGTCTAGCCAGGAGCAGCCTGACGGTTGGGATTGCGGCATTGCTGTGTCGAGAAAGGGGCATTGAGGGCCTGCGCGAGCCGTCGGGTATGGATACCCGTCAGTTTGTCCGCTCGCAGGGGCCTGAGTTCCACTCCCTGATCTCTCAAGTTGTCGACTCCATGGAGCAGCGGTTGGCCAAGATGGTTGAAGGCAGTGGATGGAGAGATTCTGGAGCTACCAAAGAGCCAGGAAAACCAGCAGACAGTAACAAAGGAACAATGCCTGAACCGCATTAAGTTAGGGTAGTTTCTTTTGATCTCATCTCTAGTAGTACTCTGAGATGAGATGGGCTGATAGTATCTGTTGTAGGGTGTAGCTCAGCTCACTGACTGCCAGTATAGTATGTACAGAGCTCTGGCAGTCTGGTACTCTGGTTCCGTCACCTTGACTTATCCTATCTATGAAGTAATGCAACCTCTAACTTGTTTACATATTACATCTCGATTCTATGAAATGCTCAGAGCTGCTGTTCTTCTTTTAAAAAAAAAA] [+] EMBL AK069282 [CCTCCAGTCCTCCTCGGCCTTTCCCCCCGCCACAAAACCCTAGAGCGCGAATGGGGCGGCAGGTGCGCAAGCACGAGGGCTCGCACGGCAAGGTGGACGCGCCGCCGCCGAAGAAGCCGAGGAGCACCGAGCGGCCATTGGCACCGCTCGCCGCCGCCACGACGACCGCCAAGCCAAGGCGTGACGTGGTGAGACCCGCGGCGAGGAAATCCTCGGCTTCGAGCGATCGCGGCCCCGTCGCCCCCGGCAGCGACCTCGAGACGGAAGATTCAGATGGTCTTGGCTGCTTGACCCCTGACAGCACGAAAGCTACGCTTCAGCAGGATGATTATGGGAAAGGGGAGTACTCTCCGGGTGTGGTTCTATCTAAGACTGGTATGTTTAGGTTTGCCGGTTCTGTTGCTTTTGTGTTAATCATATTTAGTTTCCTTGCTGAGTTTTGAAAATTCTCCTTTTTATGAGGGAGATTCTGTGGTGAAGATGGCAGTAGCTGATGTACAGGACCTGCCTGTTGAAGATTTGAGGGATAATGAAGTGATCACTGTGGATAGTGAAGGCCCTGGCAAGCCTCTCCAGTCAATTCCCCTTGTTCAAGACAAGGATGCAATACAACTTGCGAGAACTTTTGTCAATGAGAAAGTCAAAGAGCTAATGGAAGGTGTCTCAGAGCCAGGAGTCCTGCAGAGTCGTTTGTCTAAAATCACCTCATTCCTTGTTCAGGCCACCTCTATAGCTGCCGGCCTCCATGATGAAGTCCCTCTACAAATACGTGGACAAACTGCTGCTTTGGTGACCCAAATCTCAGGGCTTGAGCAGCAGGTGGAGGAGCTGTCCAAGAAGCTGTGTAGCACTGAGGATGAGCTTGAGGTGACCAATGCAATGTTGAAAGAGACCCAGGCTGCCATGCTAGAGGCACAATCAGACCGAGCGACCGCCATTACTGCCATGAACAGCCTTGCCATGCGCATGGGAGCTTCATTCGCTAGGCTGGGCACAATACTGGACCCCCCACCCAATGCGGCTGACTCTCTGGAGAAGAGCATTAAGCAGATGACAGCCCTCGTGTCTCTCCTCGGCCCTGTGTCTCACAGCCATAGCTTGAGTCTAGCCAGGAGCAGCCTGACGGTTGGGATTGCGGCATTGCTGTGTCGAGAAAGGGGCATTGAGGGCCTGCGCGAGCCGTCGGGTATGGATACCCGTCAGTTTGTCCGCTCGCAGGGGCCTGAGTTCCACTCCCTGATCTCTCAAGTTGTCGACTCCATGGAGCAGCGGTTGGCCAAGATGGTTGAAGGCAGTGGATGGAGAGATTCTGGAGCTACCAAAGAGCCAGGAAAACCAGCAGACAGTAACAAAGGAACAATGCCTGAACCGCATTAAGTTAGGGTAGTTTCTTTTGATCTCATCTCTAGTAGTACTCTGAGATGAGATGGGCTGATAGTATCTGTTGTAGGGTGTAGCTCAGCTCACTGACTGCCAGTATAGTATGTACAGAGCTCTGGCAGTCTGGTACTCTGGTTCCGTCACCTTGACTTATCCTATCTATGAAGTAATGCAACCTCTAACTTGTTTACATATTACATCT ] [+] EMBL BP185024 [ acgaggCTGCTGCTTTGGTGACCCAAATCTCAGGGCTTGAGCAGCAGGTGGAGGAGCTGTCCAAGAAGCTGTGTAGCACTGAGGATGAGCTTGAGGTGACCAATGCAATGTTGAAAGAGACCCAGGCTGCCATGCTAGAGGCACAATCAGACCGAGCGACCGCCATTACTGCCATGAACAGCCTTGCCATGCGCATGGGAGCTTCATTCGCTAGGCTGGGCACAATACTGGACCCCCCACCCAATGCGGCTGACTCTCTGGAGAAGAGCATTAAGCAGATGACAGCCCTCGTGTCTCTCCTCGGCCCTGTGTCTCACAGCCATAGCTTGAGTCTAGCCAGGAGCAGCCTGACGGTTGGGATTGCGGCATTGCTGTGTCGAGAAAGGGGCATTGAGGGCCTGCGCGAGCCGTCGGGTATGGATACCCGTCAGTTTGTCCGCTCGCAGGGGCCTGAGTTCCACTCCCTGATCTCTCAAGTTGTCGACTCCATGGAGCAGCGGTTGGCCAAGATGGTTGAAGGCAGTGGATGGAGAGATTCTGGAGCTACCAAAGAGCCAGGAAAACCAGCAGACAGTAACAAAGGAACAATGCCTGAACCGCATTAAGTTAGGGTAGTTTCTTTTGATCTCATCTC ] [+] EMBL BP185025 [ GACAGCCCTCGTGTCTCTCCTCGGCCCTGTGTCTCACAGCCATAGCTTGAGTCTAGCCAGGAGCAGCCTGACGGTTGGGATTGCGGCATTGCTGTGTCGAGAAAGGGGCATTGAGGGCCTGCGCGAGCCGTCGGGTATGGATACCCGTCAGTTTGTCCGCTCGCAGGGGCCTGAGTTCCACTCCCTGATCTCTCAAGTTGTCGACTCCATGGAGCAGCGGTTGGCCAAGATGGTTGAAGGCAGTGGATGGAGAGATTCTGGAGCTACCAAAGAGCCAGGAAAACCAGCAGACAGTAACAAAGGAACAATGCCTGAACCGCATTAAGTTAGGGTAGTTTCTTTTGATCTCATCTCTAGTAGTACTCTGAGATGAGATGGGCTGATAGTATCTGTTGTAGGGTGTAGCTCAGCTCACTGACTGCCAGTATAGTATGTACAGAGCTCTGGCAGTCTGGTACTCTGGTTCCGTCACCTTGACTTATCCTATCTATGAAGTAATGCAACCTCTAACTTGTTTACATATTACATCTCGATTCTATGAAATGCTCAGAGCTGCTGTTCTTCTTTTAAAAAAAAAA] consensusID : consensus_8691#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 603 fasta sequence [GCTGGNCACAATATGGACCCCCCACCNAATGCGGCTGACTCTCTGGAGAAGAGCATTAAGCAGATGACAGCCCTCGTGTCTCTCCTCGGCCCTGTNTCTCACAGCCATAGCTTGAGTCTAGCCAGGAGCAGCCTGACGGTTGGGATTGCGGCATTGCTGTGTCGAGAAAGGGGCATTGAGGGCCTGCGCGAGCCGTCGGGTATGGATACCCGTCAGTTTGTCCGCTCGCAGGGGCCTGAGTTCCACTCCCTGATCTCTCAAGTTGTCGACTCCATGGAGCAGCGGTTGGCCAAGATGGTTGAAGGCAGTGGATGGAGAGATTCTGGAGCTACCAAAGAGCCAGGAAAACCAGCAGACAGTAACAAAGGAACAATGCCTGAACCGCATTAAGTTAGGGTAGTTTCTTTTGATCTCATCTCTAGTAGTACTCTGAGATGAGATGGGCTGATAGTATCTGTTGTAGGGTGTAGCTCAGCTCACTGACTGCCAGTATAGTATGTACAGAGCTCTGGCAGTCTGGTACTCTGGTTCCGTCACCTTGACTTATCCTATCTATGAAGTAATGCAACCTCTAACTTGTTTACATAAAAAAAAAAAAAAAAA] [+] EMBL AU089677 [GCTGGNCACAATATGGACCCCCCACCNAATGCGGCTGACTCTCTGGAGAAGAGCATTAAGCAGATGACAGCCCTCGTGTCTCTCCTCGGCCCTGTNTCTCACAGCCATAGCTTGAGTCTAGCCAGGAGCAGCCTGACGGTTGGGATTGCGGCATTGCTGTGTCGAGAAAGGGGCATTGAGGGCCTGCGCGAGCCGTCGGGTATGGATACCCGTCAGTTTGTCCGCTCGCAGGGGCCTGAGTTCCACTCCCTGATCTCTCAAGTTGTCGACTCCATGGAGCAGCGGTTGGCCAAGATGGTTGAAGGCAGTGGATGGAGAGATTCTGGAGCTACCAAAGAGCCAGGAAAACCAGCAGACAGTAACAAAGGAACAATGCCTGAACCGCATTAAGTTAGGGTAGTTTCTTTTGATCTCATCTCTAGTAGTACTCTGAGATGAGATGGGCTGATAGTATCTGTTGTAGGGTGTAGCTCAGCTCACTGACTGCCAGTATAGTATGTACAGAGCTCTGGCAGTCTGGTACTCTGGTTCCGTCACCTTGACTTATCCTATCTATGAAGTAATGCAACCTCTAACTTGTTTACATAAAAAAAAAAAAAAAAA] consensusID : consensus_8691#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 314 fasta sequence [GTAGTGTCCTCCTCCAGTCCTCCTCGGCCTTTCCCCCCGCCACAAAACCCTAGAGCGCGAATGGGGCGGCAGGTGCGCAAGNGTNGTGGCTCGCACGGCAAGGTGGACGCGNCGCCGNCGAAGAAGCCGAGGAGCACCGAGCGGCCATTGGCACCGCTCGTCGNCGTCACGACGACCGCCAAGCCAAGGCGTGACGTGGTGAGACCCGCGGCGAGGAAATNCTCGGCTTNGAGCGATCGTGGNCCCGTCGTCCCCGGCAAGNGANCTCGAGACGGNAGATTCAAGATGGGTCTTGGNTTCTTTGACCCCTTGGA] [+] EMBL OSC100791 [GTAGTGTCCTCCTCCAGTCCTCCTCGGCCTTTCCCCCCGCCACAAAACCCTAGAGCGCGAATGGGGCGGCAGGTGCGCAAGNGTNGTGGCTCGCACGGCAAGGTGGACGCGNCGCCGNCGAAGAAGCCGAGGAGCACCGAGCGGCCATTGGCACCGCTCGTCGNCGTCACGACGACCGCCAAGCCAAGGCGTGACGTGGTGAGACCCGCGGCGAGGAAATNCTCGGCTTNGAGCGATCGTGGNCCCGTCGTCCCCGGCAAGNGANCTCGAGACGGNAGATTCAAGATGGGTCTTGGNTTCTTTGACCCCTTGGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8691#0 CCTCCAGTCCTCCTCGGCCTTTCCCCCCGCCACAAAACCCTAGAGCGCGAATGGGGCGGC 60 consensus_8691#1 ------------------------------------------------------------ consensus_8691#2 ------------------------------------------------------------ consensus_8691#0 AGGTGCGCAAGCACGAGGGCTCGCACGGCAAGGTGGACGCGCCGCCGCCGAAGAAGCCGA 120 consensus_8691#1 ------------------------------------------------------------ consensus_8691#2 ------------------------------------------------------------ consensus_8691#0 GGAGCACCGAGCGGCCATTGGCACCGCTCGCCGCCGCCACGACGACCGCCAAGCCAAGGC 180 consensus_8691#1 ------------------------------------------------------------ consensus_8691#2 ------------------------------------------------------------ consensus_8691#0 GTGACGTGGTGAGACCCGCGGCGAGGAAATCCTCGGCTTCGAGCGATCGCGGCCCCGTCG 240 consensus_8691#1 ------------------------------------------------------------ consensus_8691#2 ------------------------------------------------------------ consensus_8691#0 CCCCCGGCAGCGACCTCGAGACGGAAGATTCAGATGGTCTTGGCTGCTTGACCCCTGACA 300 consensus_8691#1 ------------------------------------------------------------ consensus_8691#2 ------------------------------------------------------------ consensus_8691#0 GCACGAAAGCTACGCTTCAGCAGGATGATTATGGGAAAGGGGAGTACTCTCCGGGTGTGG 360 consensus_8691#1 ------------------------------------------------------------ consensus_8691#2 ------------------------------------------------------------ consensus_8691#0 TTCTATCTAAGACTGGTATGTTTAGGTTTGCCGGTTCTGTTGCTTTTGTGTTAATCATAT 420 consensus_8691#1 ------------------------------------------------------------ consensus_8691#2 ------------------------------------------------------------ consensus_8691#0 TTAGTTTCCTTGCTGAGTTTTGAAAATTCTCCTTTTTATGAGGGAGATTCTGTGGTGAAG 480 consensus_8691#1 ------------------------------------------------------------ consensus_8691#2 ------------------------------------------------------------ consensus_8691#0 ATGGCAGTAGCTGATGTACAGGACCTGCCTGTTGAAGATTTGAGGGATAATGAAGTGATC 540 consensus_8691#1 ------------------------------------------------------------ consensus_8691#2 ------------------------------------------------------------ consensus_8691#0 ACTGTGGATAGTGAAGGCCCTGGCAAGCCTCTCCAGTCAATTCCCCTTGTTCAAGACAAG 600 consensus_8691#1 ------------------------------------------------------------ consensus_8691#2 ------------------------------------------------------------ consensus_8691#0 GATGCAATACAACTTGCGAGAACTTTTGTCAATGAGAAAGTCAAAGAGCTAATGGAAGGT 660 consensus_8691#1 ------------------------------------------------------------ consensus_8691#2 ------------------------------------------------------------ consensus_8691#0 GTCTCAGAGCCAGGAGTCCTGCAGAGTCGTTTGTCTAAAATCACCTCATTCCTTGTTCAG 720 consensus_8691#1 ------------------------------------------------------------ consensus_8691#2 ------------------------------------------------------------ consensus_8691#0 GCCACCTCTATAGCTGCCGGCCTCCATGATGAAGTCCCTCTACAAATACGTGGACAAACT 780 consensus_8691#1 ------------------------------------------------------------ consensus_8691#2 ------------------------------------------------------------ consensus_8691#0 GCTGCTTTGGTGACCCAAATCTCAGGGCTTGAGCAGCAGGTGGAGGAGCTGTCCAAGAAG 840 consensus_8691#1 ------------------------------------------------------------ consensus_8691#2 ------------------------------------------------------------ consensus_8691#0 CTGTGTAGCACTGAGGATGAGCTTGAGGTGACCAATGCAATGTTGAAAGAGACCCAGGCT 900 consensus_8691#1 ------------------------------------------------------------ consensus_8691#2 ------------------------------------------------------------ consensus_8691#0 GCCATGCTAGAGGCACAATCAGACCGAGCGACCGCCATTACTGCCATGAACAGCCTTGCC 960 consensus_8691#1 ------------------------------------------------------------ consensus_8691#2 ------------------------------------------------------------ consensus_8691#0 ATGCGCATGGGAGCTTCATTCGCTAGGCTGGGCACAATACTGGACCCCCCACCCAATGCG 1020 consensus_8691#1 --------------------------GCTGGNCACAATA-TGGACCCCCCACCNAATGCG 33 consensus_8691#2 ------------------------------------------------------------ consensus_8691#0 GCTGACTCTCTGGAGAAGAGCATTAAGCAGATGACAGCCCTCGTGTCTCTCCTCGGCCCT 1080 consensus_8691#1 GCTGACTCTCTGGAGAAGAGCATTAAGCAGATGACAGCCCTCGTGTCTCTCCTCGGCCCT 93 consensus_8691#2 --------------------------GTAG-TGTCC-TCCTCCAGTC-CTCCTCGGCCTT 31 * ** ** * **** *** ********** * consensus_8691#0 GTGTCTCACAGCCATAGCTTGAGTCTAGCCAGGAGCAGCCTGACGGTTGGGATTGCGGCA 1140 consensus_8691#1 GTNTCTCACAGCCATAGCTTGAGTCTAGCCAGGAGCAGCCTGACGGTTGGGATTGCGGCA 153 consensus_8691#2 TCCCCCCGCCACAAAACCCTAGAGCGCGAATGGGGCGGCAGGTGCGCAAGNGTNGTGGC- 90 * * * * * * * * * * ** ** ** * * * * * *** consensus_8691#0 TTGCTGTGTCGAGAAAGGGGCATTGAGGGCCTGCGCGAGCCGTCGGGTATGGATACCCGT 1200 consensus_8691#1 TTGCTGTGTCGAGAAAGGGGCATTGAGGGCCTGCGCGAGCCGTCGGGTATGGATACCCGT 213 consensus_8691#2 TCGC-ACGGCAAGGTGGACGCGNCGCCGNC--GAAGAAGCCGAGGAGCACCGA--GCGGC 145 * ** * * ** * ** * * * * ***** * * * ** * * consensus_8691#0 CAGTTTGTCCGCTCGCAGGGGCCTGAGTTCCACTCCCTGATCTCTCAAGTTGTCGACTCC 1260 consensus_8691#1 CAGTTTGTCCGCTCGCAGGGGCCTGAGTTCCACTCCCTGATCTCTCAAGTTGTCGACTCC 273 consensus_8691#2 CATTGGCACCGCTCGTCGNCGTC---ACGACGACCGCCAAGC---CAAGGCGTGA----C 195 ** * ******* * * * * * * * * **** ** * consensus_8691#0 ATGGAGCAGCGGTTGGCCAAGATGGTTGAAGGCAGTGGATGGAGAGATTCTGGAGCTACC 1320 consensus_8691#1 ATGGAGCAGCGGTTGGCCAAGATGGTTGAAGGCAGTGGATGGAGAGATTCTGGAGCTACC 333 consensus_8691#2 GTGGTGAGACCCGCGGCGAGGA------AATNCTCGGCTTNGAGCGATCGTGGNCCCGTC 249 *** * * *** * ** ** * * * *** *** *** * * consensus_8691#0 AAAGA-GCCAGGAAAACCAGCAGACAGTAACAAAGGAACAATGCCTGAACCGCATTAAGT 1379 consensus_8691#1 AAAGA-GCCAGGAAAACCAGCAGACAGTAACAAAGGAACAATGCCTGAACCGCATTAAGT 392 consensus_8691#2 GTCCCCGGCAAGNGANCTCG-AGACGGNAGATTCAAGATGG-GTCTTGGNTTCTTTGACC 307 * ** * * * * **** * * * * ** * ** * consensus_8691#0 TAGGGTAGTTTCTTTTGATCTCATCTCTAGTAGTACTCTGAGATGAGATGGGCTGATAGT 1439 consensus_8691#1 TAGGGTAGTTTCTTTTGATCTCATCTCTAGTAGTACTCTGAGATGAGATGGGCTGATAGT 452 consensus_8691#2 CCTTGGA----------------------------------------------------- 314 * * consensus_8691#0 ATCTGTTGTAGGGTGTAGCTCAGCTCACTGACTGCCAGTATAGTATGTACAGAGCTCTGG 1499 consensus_8691#1 ATCTGTTGTAGGGTGTAGCTCAGCTCACTGACTGCCAGTATAGTATGTACAGAGCTCTGG 512 consensus_8691#2 ------------------------------------------------------------ consensus_8691#0 CAGTCTGGTACTCTGGTTCCGTCACCTTGACTTATCCTATCTATGAAGTAATGCAACCTC 1559 consensus_8691#1 CAGTCTGGTACTCTGGTTCCGTCACCTTGACTTATCCTATCTATGAAGTAATGCAACCTC 572 consensus_8691#2 ------------------------------------------------------------ consensus_8691#0 TAACTTGTTTACATATTACATCTCGATTCTATGAAATGCTCAGAGCTGCTGTTCTTCTTT 1619 consensus_8691#1 TAACTTGTTTACATAAAAAAAAAAAAAAAAA----------------------------- 603 consensus_8691#2 ------------------------------------------------------------ consensus_8691#0 TAAAAAAAAAA 1630 consensus_8691#1 ----------- consensus_8691#2 ----------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||