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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8693#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1784 fasta sequence
[TTCGTGATTGCCCGGTCGCGGCCTCGCCGCT-AACCCTAACCGATCGAATTCCTCCGAAAAAATCCAGCCATGGCGCCGGCGGCGCAG-GAGCCTTGGGCCATTCTGGCCGCAATCCCTAACGTGGTGGGGTACAAGGAGGCGAAGCGCATCTTCCCGCCGGGCACCGACATCTCCGTCGCCCGCAAGGAGGTCCCGCGAGCCTCCGTCCTGACCGTGCCGCGCCACATCTCCCTCCCGGCCTGCCTCGGACTCTACCCCTATGTCGTCGCCGCCGACCGCTCTGGCCTTCTCCTCCTCGGCACGCATCCTGTCACCTCCGCCTCCGCCATGGTCTCCTACCACATCTGTGATGCGCACACCGGTGAGGTAGTCTCCCTCCGCGACTGCAAACCAATGCGCCCCATGACCTTCTACGGCGCCGCCAACGTCGGTCTCATCATCAAGGACGACGGCTGTATGGTCGCTGAGCTCCAGCCGGGATGCAAGGGCACAAGCACCGGTGGTGCCACTCTGCTCAGCTACAAGGTGGGGGAGTGCTGCAAGTGGCGCGAGAGGGAGCTTACCTGCTCGCCCCCACTCCCGCTGGACTGGTACCCGGAGGGCGTCGTCTCCCACGGCGGGATGCTCTGGTGGGTGGACCTCTCCTACGGCCTCCTCGCGTGCGATCCCTTCGCCGAGGAGCCGAACCTGATCCACGTCCCGCTCCCACAAGTTCCCGACGAGCTTCCTGTTGATGACCAGGTTAACCGCGGTGCCCACCGCTGCGTGAAGGTGAGCGGAGGAAGGCTGATGTACGTGCAGATACACGGCAATCCTGTTGTGCCGGTGGTCAGCACATGGTTGCTCGACGAATCGACCTGCTCGCCCGGGGAGTGGGAGTGGAACCCCCAGCTCAGCGCGCCCTTGGCCGAGCTCTGGATTGACCAGAGCTATGTGGACACCATGCTGCCGTTGACCATTCCTGCCCTTGCGCTCCCCCACCCCACAGATCCTAACAGGGTATATTTCTTCCTCAAATCTTGCATCTTCGCAGCCGACCTACGGTTGAGGAAGCT-GGTGTCATTCAATAGTTTTGAGATGCTCGACCCACCGTGTGAACTTTGGATGAAGCGCTCCTCCCACTTGGTCCACGCATGGCAGTATGATCCTTCAAGCA-GTCGTTCTGACTTTGTATTGGCATGCTTGAGGCAAGACAAGGCA-ATTGCTTCTAAGAGCAGCTTCTCTGGTATAATTCCTGTCACTCGTAGAACTGCTAAAAGTTTGAAGAGAGTTTGGGATTCTGTAACCAGGCAGCAGCAAAAGCAGGAGCAGCAGCTGCAGAAGCAAGCTATGTAAGGTGCAGAATCTCTGAAGAAAGCAGAATCAGCCAGCCTCATTAAGTATGAAGGAAGGGTAGAGTATATTATTTTGTGCATGATTTGCCAGCCTCATTAACCAGGATTTATGAAAACGATCTGATACAGCATGAGCTTACTTGTGAGTTCTTGTTCTGTGCCTTTTCTTAGGCCTATTTATAAGGGAGACGCTTCATGTACAGCTTGAGTACAAACGTGAATCTTGACTGTTGGATGCATTTATGAGGATTTTAACCATTCCGATCTTGAGTTGTCCCAAATAAGACTTTCAATAGACAGTCTTCAATGTTAAATAGAAACATGTTAATTAGTTCTACAACCATACCATGCATGCATGTGTACGTGACAGTCTTCAATGCTTGGACAGTACTATGGCTGAATATTTGTAACTGATGTAACGGTTAGGATGTATCAAAATAAGATAGCTTG]
[+] EMBL AK066413 [TTCGTGATTGCCCGGTCGCGGCCTCGCCGCT AACCCTAACCGATCGAATTCCTCCGAAAAAATCCAGCCATGGCGCCGGCGGCGCAG GAGCCTTGGGCCATTCTGGCCGCAATCCCTAACGTGGTGGGGTACAAGGAGGCGAAGCGCATCTTCCCGCCGGGCACCGACATCTCCGTCGCCCGCAAGGAGGTCCCGCGAGCCTCCGTCCTGACCGTGCCGCGCCACATCTCCCTCCCGGCCTGCCTCGGACTCTACCCCTATGTCGTCGCCGCCGACCGCTCTGGCCTTCTCCTCCTCGGCACGCATCCTGTCACCTCCGCCTCCGCCATGGTCTCCTACCACATCTGTGATGCGCACACCGGTGAGGTAGTCTCCCTCCGCGACTGCAAACCAATGCGCCCCATGACCTTCTACGGCGCCGCCAACGTCGGTCTCATCATCAAGGACGACGGCTGTATGGTCGCTGAGCTCCAGCCGGGATGCAAGGGCACAAGCACCGGTGGTGCCACTCTGCTCAGCTACAAGGTGGGGGAGTGCTGCAAGTGGCGCGAGAGGGAGCTTACCTGCTCGCCCCCACTCCCGCTGGACTGGTACCCGGAGGGCGTCGTCTCCCACGGCGGGATGCTCTGGTGGGTGGACCTCTCCTACGGCCTCCTCGCGTGCGATCCCTTCGCCGAGGAGCCGAACCTGATCCACGTCCCGCTCCCACAAGTTCCCGACGAGCTTCCTGTTGATGACCAGGTTAACCGCGGTGCCCACCGCTGCGTGAAGGTGAGCGGAGGAAGGCTGATGTACGTGCAGATACACGGCAATCCTGTTGTGCCGGTGGTCAGCACATGGTTGCTCGACGAATCGACCTGCTCGCCCGGGGAGTGGGAGTGGAACCCCCAGCTCAGCGCGCCCTTGGCCGAGCTCTGGATTGACCAGAGCTATGTGGACACCATGCTGCCGTTGACCATTCCTGCCCTTGCGCTCCCCCACCCCACAGATCCTAACAGGGTATATTTCTTCCTCAAATCTTGCATCTTCGCAGCCGACCTACGGTTGAGGAAGCT GGTGTCATTCAATAGTTTTGAGATGCTCGACCCACCGTGTGAACTTTGGATGAAGCGCTCCTCCCACTTGGTCCACGCATGGCAGTATGATCCTTCAAGCA GTCGTTCTGACTTTGTATTGGCATGCTTGAGGCAAGACAAGGCA ATTGCTTCTAAGAGCAGCTTCTCTGGTATAATTCCTGTCACTCGTAGAACTGCTAAAAGTTTGAAGAGAGTTTGGGATTCTGTAACCAGGCAGCAGCAAAAGCAGGAGCAGCAGCTGCAGAAGCAAGCTATGTAAGGTGCAGAATCTCTGAAGAAAGCAGAATCAGCCAGCCTCATTAAGTATGAAGGAAGGGTAGAGTATATTATTTTGTGCATGATTTGCCAGCCTCATTAACCAGGATTTATGAAAACGATCTGATACAGCATGAGCTTACTTGTGAGTTCTTGTTCTGTGCCTTTTCTTAGGCCTATTTATAAGGGAGACGCTTCATGTACAGCTTGAGTACAAACGTGAATCTTGACTGTTGGATGCATTTATGAGGATTTTAACCATTCCGATCTTGAGTTGTCCCAAATAAGACTTTCAATAGACAGTCTTCAATGTTAAATAGAAACATGTTAATTAGTTCTACAACCATACCATGCATGCATGTGTACGTGACAGTCTTCAATGCTTGGACAGTACTATGGCTGAATATTTGTAACTGATGTAACGGTTAGGATGTATCAAAATAAGATAGCTTG]
[+] EMBL AU101907 [ CGCCGCTAAACCCTAACCGATCGAATTCCTCCGAAAAAATCCAGCCATGGCGCCGGCG GCAGTGAGCCTTGGGCCATTCTGGCCGCAATCCCTAACGTGGTGGGGTACAAGGAGGCGAA NGCATCTTCCCGCCGGGCACCGACATCTCCGTCGCCCGCAAGGAGGTCCCGCGAGCCTCCGTCCTGACCGTGCCGCGCCACATCTCCCTCCCGGCCTGCCTCGGACTCTACCCCTATGTCGTCGCCGCCGANCGCTCTGGCCTTCTNCTCCTCGGCACGNAT ]
[+] EMBL BI809859 [ GAGGAA CTGGGTGTCATTCAATAGTTTTGAGATGCTCGACCCACCGTGTGAACTTTGGATGAAGCGCTCCTCCCACTTGGTCCACGCAT GCAGTATGATCCTTCAA CACGTCGTTCTGACTTTGTATTGGCATGCTTGAGGCAAGACAAGGCACATTGCTTCTAAGAGCAGCTTCTCTGGTATAATTCCTGTCACTCGTAGAACTGCTAAAAGTTTGAAGAGAGTTTGGGATTCTGTAACCAGGCAGCAGCAAAAGCAGGAGCAGCAGCTGCAGAAGCAAGCTATGTAAGGTGCAGAATCTCTGAAGAAAGCAGAATCAGCCAGCCTCATTAAGTATGAAGGAAGGGTAGAGTATATTATTTTGTGCATGATTTGCCAGCCTCATTAACCAGGATTTATGAAAACGATCTGATACAGCATGAGCTTACTTGTGAATTCTTGTTCTGTGCCTTTTCTTAGGCCTATTTATAAGGGAGACGCTTCATGTACAGCTTGAGTAAAAAa ]
[+] EMBL AU101908 [ GCATGGCAGTATGANCCTTCAAGCA GTCGTTCTGACTTTGTATTGGCATGCTTGAGGCAAGACAAGGCA ATTGCTTCTAAGAGCAGCTTCTCTGGTATAATNCCTGTCACTCGTAGAACTGCTAAAAGTTTGAAGAGAGTTTGGGATTCTGTAACCAGGCAGCAGCAAAAGCAGGAGCAGCAGCTGCAGAAGCAAGCTATGTAAGGTGCAGAATCTCTGAAGAAAGCAGAATCAGCCAGCCTCATTAAGTATGAAGGAAGGGTAGAGTATATTATTTTGTGCATGATTTGCCAGCCTCATTAACCAGGATTTATGAAAACGATCTGATACAGCATGAGCTTACTTGTGAGTTCTTGTTCTGTGCCTTTTCTTAGGCCTATTTATAAGGGAGACGCTTCATGTACAGCTTGAGTACAAACGTGAATCTTGACTGTTGGATGCATTTATGAGGATTTTAAaaaaaa ]
consensusID : consensus_8693#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 685 fasta sequence
[TNTGAGATGCTCGACCCACCGGGGTGAACTTTGGATGAAGCGCTCCTCCCACTTGGTCCACGCATGGCAGTATGATCCTTCAAGCAGTCGTTCTGACTTTGTATTGGCATGCTTGAGGCAAGACAAGGCAATTGCTTCTAAGAGCAGCTTCTCTGGTATAATTCCTGTCACTCGTAGAACTGCTAAAAGTTTGAAGAGAGTTTGGGATTCTGTAACCAGGCGGCAGCAAAAGCAGGAGCAGCAGCTGCAGAAGCAAGCTATGTAAGGTGCAGAATCTCTGAAGAAAGCAGAATCAGCCAGCCTCATTAAGTATGAAGGAAGGGCCTATTTATAAGGGAGACGCTTCATGTACAGCTTGAGTACAAACGTGAATCTTGACTGTTGGATGCATTTATGAGGATTTTAACCATTCCGATCTTGAGTTGTCCCAAATAAGACTTTCAATAGACAGTCTTCAATGTTAAATAGAAACATGTTAATTAGTTCTACAACCATACCATGCATGCATGTGTACGTGACAGTCTCCAATGCTTGGACAGTACTATGGCTGAATATTTGTAACTGATGTAACGGTTAGGATGTATCAAAATAAGATAGCTTGAAAAAAGTCCATACTTTTGTTCTAGAGGCCAAAGAATTACCATGTTAATTGAAAAACTAATTTCAAGTCCAAAAAAAAAAAAAA]
[-] EMBL CA761195 [TNTGAGATGCTCGACCCACCGGGGTGAACTTTGGATGAAGCGCTCCTCCCACTTGGTCCACGCATGGCAGTATGATCCTTCAAGCAGTCGTTCTGACTTTGTATTGGCATGCTTGAGGCAAGACAAGGCAATTGCTTCTAAGAGCAGCTTCTCTGGTATAATTCCTGTCACTCGTAGAACTGCTAAAAGTTTGAAGAGAGTTTGGGATTCTGTAACCAGGCGGCAGCAAAAGCAGGAGCAGCAGCTGCAGAAGCAAGCTATGTAAGGTGCAGAATCTCTGAAGAAAGCAGAATCAGCCAGCCTCATTAAGTATGAAGGAAGGGCCTATTTATAAGGGAGACGCTTCATGTACAGCTTGAGTACAAACGTGAATCTTGACTGTTGGATGCATTTATGAGGATTTTAACCATTCCGATCTTGAGTTGTCCCAAATAAGACTTTCAATAGACAGTCTTCAATGTTAAATAGAAACATGTTAATTAGTTCTACAACCATACCATGCATGCATGTGTACGTGACAGTCTCCAATGCTTGGACAGTACTATGGCTGAATATTTGTAACTGATGTAACGGTTAGGATGTATCAAAATAAGATAGCTTGAAAAAAGTCCATACTTTTGTTCTAGAGGCCAAAGAATTACCATGTTAATTGAAAAACTAATTTCAAGTCCAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8693#0 TTCGTGATTGCCCGGTCGCGGCCTCGCCGCTAACCCTAACCGATCGAATTCCTCCGAAAA 60
consensus_8693#1 ------------------------------------------------------------
consensus_8693#0 AATCCAGCCATGGCGCCGGCGGCGCAGGAGCCTTGGGCCATTCTGGCCGCAATCCCTAAC 120
consensus_8693#1 ------------------------------------------------------------
consensus_8693#0 GTGGTGGGGTACAAGGAGGCGAAGCGCATCTTCCCGCCGGGCACCGACATCTCCGTCGCC 180
consensus_8693#1 ------------------------------------------------------------
consensus_8693#0 CGCAAGGAGGTCCCGCGAGCCTCCGTCCTGACCGTGCCGCGCCACATCTCCCTCCCGGCC 240
consensus_8693#1 ------------------------------------------------------------
consensus_8693#0 TGCCTCGGACTCTACCCCTATGTCGTCGCCGCCGACCGCTCTGGCCTTCTCCTCCTCGGC 300
consensus_8693#1 ------------------------------------------------------------
consensus_8693#0 ACGCATCCTGTCACCTCCGCCTCCGCCATGGTCTCCTACCACATCTGTGATGCGCACACC 360
consensus_8693#1 ------------------------------------------------------------
consensus_8693#0 GGTGAGGTAGTCTCCCTCCGCGACTGCAAACCAATGCGCCCCATGACCTTCTACGGCGCC 420
consensus_8693#1 ------------------------------------------------------------
consensus_8693#0 GCCAACGTCGGTCTCATCATCAAGGACGACGGCTGTATGGTCGCTGAGCTCCAGCCGGGA 480
consensus_8693#1 ------------------------------------------------------------
consensus_8693#0 TGCAAGGGCACAAGCACCGGTGGTGCCACTCTGCTCAGCTACAAGGTGGGGGAGTGCTGC 540
consensus_8693#1 ------------------------------------------------------------
consensus_8693#0 AAGTGGCGCGAGAGGGAGCTTACCTGCTCGCCCCCACTCCCGCTGGACTGGTACCCGGAG 600
consensus_8693#1 ------------------------------------------------------------
consensus_8693#0 GGCGTCGTCTCCCACGGCGGGATGCTCTGGTGGGTGGACCTCTCCTACGGCCTCCTCGCG 660
consensus_8693#1 ------------------------------------------------------------
consensus_8693#0 TGCGATCCCTTCGCCGAGGAGCCGAACCTGATCCACGTCCCGCTCCCACAAGTTCCCGAC 720
consensus_8693#1 ------------------------------------------------------------
consensus_8693#0 GAGCTTCCTGTTGATGACCAGGTTAACCGCGGTGCCCACCGCTGCGTGAAGGTGAGCGGA 780
consensus_8693#1 ------------------------------------------------------------
consensus_8693#0 GGAAGGCTGATGTACGTGCAGATACACGGCAATCCTGTTGTGCCGGTGGTCAGCACATGG 840
consensus_8693#1 ------------------------------------------------------------
consensus_8693#0 TTGCTCGACGAATCGACCTGCTCGCCCGGGGAGTGGGAGTGGAACCCCCAGCTCAGCGCG 900
consensus_8693#1 ------------------------------------------------------------
consensus_8693#0 CCCTTGGCCGAGCTCTGGATTGACCAGAGCTATGTGGACACCATGCTGCCGTTGACCATT 960
consensus_8693#1 ------------------------------------------------------------
consensus_8693#0 CCTGCCCTTGCGCTCCCCCACCCCACAGATCCTAACAGGGTATATTTCTTCCTCAAATCT 1020
consensus_8693#1 ------------------------------------------------------------
consensus_8693#0 TGCATCTTCGCAGCCGACCTACGGTTGAGGAAGCTGGTGTCATTCAATAGTTTTGAGATG 1080
consensus_8693#1 ---------------------------------------------------TNTGAGATG 9
* *******
consensus_8693#0 CTCGACCCACCGTG-TGAACTTTGGATGAAGCGCTCCTCCCACTTGGTCCACGCATGGCA 1139
consensus_8693#1 CTCGACCCACCGGGGTGAACTTTGGATGAAGCGCTCCTCCCACTTGGTCCACGCATGGCA 69
************ * *********************************************
consensus_8693#0 GTATGATCCTTCAAGCAGTCGTTCTGACTTTGTATTGGCATGCTTGAGGCAAGACAAGGC 1199
consensus_8693#1 GTATGATCCTTCAAGCAGTCGTTCTGACTTTGTATTGGCATGCTTGAGGCAAGACAAGGC 129
************************************************************
consensus_8693#0 AATTGCTTCTAAGAGCAGCTTCTCTGGTATAATTCCTGTCACTCGTAGAACTGCTAAAAG 1259
consensus_8693#1 AATTGCTTCTAAGAGCAGCTTCTCTGGTATAATTCCTGTCACTCGTAGAACTGCTAAAAG 189
************************************************************
consensus_8693#0 TTTGAAGAGAGTTTGGGATTCTGTAACCAGGCAGCAGCAAAAGCAGGAGCAGCAGCTGCA 1319
consensus_8693#1 TTTGAAGAGAGTTTGGGATTCTGTAACCAGGCGGCAGCAAAAGCAGGAGCAGCAGCTGCA 249
******************************** ***************************
consensus_8693#0 GAAGCAAGCTATGTAAGGTGCAGAATCTCTGAAGAAAGCAGAATCAGCCAGCCTCATTAA 1379
consensus_8693#1 GAAGCAAGCTATGTAAGGTGCAGAATCTCTGAAGAAAGCAGAATCAGCCAGCCTCATTAA 309
************************************************************
consensus_8693#0 GTATGAAGGAAGGGTAGAGTATATTATTTTGTGCATGATTTGCCAGCCTCATTAACCAGG 1439
consensus_8693#1 GTATGAAGGAAGGG---------------------------------------------- 323
**************
consensus_8693#0 ATTTATGAAAACGATCTGATACAGCATGAGCTTACTTGTGAGTTCTTGTTCTGTGCCTTT 1499
consensus_8693#1 ------------------------------------------------------------
consensus_8693#0 TCTTAGGCCTATTTATAAGGGAGACGCTTCATGTACAGCTTGAGTACAAACGTGAATCTT 1559
consensus_8693#1 -------CCTATTTATAAGGGAGACGCTTCATGTACAGCTTGAGTACAAACGTGAATCTT 376
*****************************************************
consensus_8693#0 GACTGTTGGATGCATTTATGAGGATTTTAACCATTCCGATCTTGAGTTGTCCCAAATAAG 1619
consensus_8693#1 GACTGTTGGATGCATTTATGAGGATTTTAACCATTCCGATCTTGAGTTGTCCCAAATAAG 436
************************************************************
consensus_8693#0 ACTTTCAATAGACAGTCTTCAATGTTAAATAGAAACATGTTAATTAGTTCTACAACCATA 1679
consensus_8693#1 ACTTTCAATAGACAGTCTTCAATGTTAAATAGAAACATGTTAATTAGTTCTACAACCATA 496
************************************************************
consensus_8693#0 CCATGCATGCATGTGTACGTGACAGTCTTCAATGCTTGGACAGTACTATGGCTGAATATT 1739
consensus_8693#1 CCATGCATGCATGTGTACGTGACAGTCTCCAATGCTTGGACAGTACTATGGCTGAATATT 556
**************************** *******************************
consensus_8693#0 TGTAACTGATGTAACGGTTAGGATGTATCAAAATAAGATAGCTTG--------------- 1784
consensus_8693#1 TGTAACTGATGTAACGGTTAGGATGTATCAAAATAAGATAGCTTGAAAAAAGTCCATACT 616
*********************************************
consensus_8693#0 ------------------------------------------------------------
consensus_8693#1 TTTGTTCTAGAGGCCAAAGAATTACCATGTTAATTGAAAAACTAATTTCAAGTCCAAAAA 676
consensus_8693#0 ---------
consensus_8693#1 AAAAAAAAA 685
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||