These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8696#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 442 fasta sequence [GCCGTCGGGGCAGCGGCGGCTGGAGTTCAGCTTCCAGGGGTCGTCGGCGTCGGCGGTGGGTGGGGGAGGAGGGGAGTTCGAGAGGGTTAGGATGCGGAGCCGCTGGGGAACCCGATGGCGGCGAGGGAAGGGNAGGAGGAGTCGCGGTGGCTGCAGGCGTCGCGGGTCGGCTCGCCGGAGTCCGGCACGCCGTCGCCGGAGTTCTGGGGGCAGCAGCAGCAGCAGCAGCTCCAGCGGCTATACCCGGCGTCGGCGGGGAGCTCGCCGTCGAGGGCGCAGGCGATCGCCGGGTACCGACGCGAGATGCTCGACCTCGTCCGCGGCCTCCCCGAGTCCTGCTACGAGCTCTCCCTCCGCGAC-ATCGTCGA-GTCCCCTCCTCCTCCGCCGCCGCATCCTCTCCCTCCTCCTCCCCCCACCCCACCACCTCCCACCGCCGAAGCCA] [+] EMBL AU097265 [GCCGTCGGGGCAGCGGCGGCTGGAGTTCAGCTTCCAGGGGTCGTCGGCGTCGGCGGTGGGTGGGGGAGGAGGGGAGTTCGAGAGGGTTAGGATGCGGACCCGCTGGGGAACCCGATGGCGGCGAGGGAAGGGGAGGAGGAGTCGCGGTGGCTGCAGGCGTCGCGGGTCGGCTCGCCGGAGTCCGGCACGCCGTCGCCGGAGTTCTGGGGGCAGCAGCAGCAGCAGCAGCTCCAGCGGCTATACCCGGCGTCGGCGGGGAGCTCGCCGTCGAGGGCGCAGGCGATCGCCGGGTACCGACGCGAGATGCTCGACCTCGTCCGCGGCCTCCCCGAGTCCTGCTACGAGCTCTCCCTCCGCGAC ATCGTCGA GTCCCCTCCTCCTCCGCCGCCGCATCCTCTCCCTCCTCCTCCCCCCACCCCACCACCTCCCACCGCCGAAGCCA] [+] EMBL OSS3307A [GCCGTCGGGGCAGCGGCGGCTGGAGTTCAGCTTCCAGGGGTCGTNGGCGTCGGCGGTGGGTGGGGGAGGAGGGGAGTTCGAGAGGGTTAGGATGCGGAGCCGCTGGGGAACCCGATGGCGGCGAGGGAAGNGNAGGAGGAGTCGCGGTGGCTGCAGGCGTCGCGGGTCGGCTCGCCGGAGTCCGGCACGCCGTCGCCGGAGTTCTGGGGGCAGCAGCAGCAGCAGCAGCTCCAGCGGCTATACCCGNCGTCGGCGNGGAGCTCGCCGTCGAGGGCGCAGGCGATCGCCGGGTACCGACGCGAGATGCTCNAGCTCGTCCNCGGCCTCCCCGAGTCCTNCTACGAACTCTCCCTCCGNGACAATCGTCGANGTCCCCTt ] [+] EMBL OSS3029A [GCCGTCGGGGCAGCGGCGGCTGGAGTTCAGCTTCCAGGGGTCGTCGGCGTCGGCGGTGGGTGGGGGAGGAGGGGAGTTCGANAGGGTTAGGATGCGGANCCGCTGGGGAACCCGATGGCGGCGAGGGAAGGGNAGGAGGAGTCGCGGTGGCTGCAGGCNTCGCGGGTCGGCTCGCCGGAGTCCGGCACGNCGTCGCCGGAGTTCTGGGGGCAGCAGCAGCAGCAGCAGCTCCAGCGGCTATACCCGGCGTCGGCGGGGAGCTCGCCGT ] consensusID : consensus_8696#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 324 fasta sequence [TCCAACCTCTCTCTCTCTCTCTCGGCGTCGGGATGATGCCGATGCCGCCGTCGGGGCAGCGGCGGCTGGAGTTCAGCTTCCAGGGGTCGTCGGCGTCGGCGGTGGGTGGGGGAGGAGGGGAGTTCGAGAGGGTTAGGATGCGGANCCGCTGGGGAACCCGATGGCGGCGAGGGAANNGGAGGAGGAGTCGCGGTNGCTGCAGGCGTCGCGGGTCGGCTCGCCGGAGTCCCGCANGNCGTCGCCGGAGTTCTTNGGGGCAACANCAACAGCAACAACTCCANCGCTATACCCGCGTCGCGGGAGTTGCGTCGAGGCCAGCATCCC] [+] EMBL OSS13958A [TCCAACCTCTCTCTCTCTCTCTCGGCGTCGGGATGATGCCGATGCCGCCGTCGGGGCAGCGGCGGCTGGAGTTCAGCTTCCAGGGGTCGTCGGCGTCGGCGGTGGGTGGGGGAGGAGGGGAGTTCGAGAGGGTTAGGATGCGGANCCGCTGGGGAACCCGATGGCGGCGAGGGAANNGGAGGAGGAGTCGCGGTNGCTGCAGGCGTCGCGGGTCGGCTCGCCGGAGTCCCGCANGNCGTCGCCGGAGTTCTTNGGGGCAACANCAACAGCAACAACTCCANCGCTATACCCGCGTCGCGGGAGTTGCGTCGAGGCCAGCATCCC] consensusID : consensus_8696#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 200 fasta sequence [GCCGTCGGGGCAGCGGCGGCTGGAGTTCAGCTTCCAGNGGTCGTCGGCGTCGGCGGTGGGTGGGGGAGGAGGGGAGTTCGAGAGGGTTAGGATGCGGANCCGCTGGGGAACCCGATGGCGGCGAGGGAAAGGGAGGAGGAGTCNCGGTGGCTNCAAGCGTCGCGGGTCGGCTCGCNGNATTCCGCAACGNTNTNGCCGAA] [+] EMBL OSS3047A [GCCGTCGGGGCAGCGGCGGCTGGAGTTCAGCTTCCAGNGGTCGTCGGCGTCGGCGGTGGGTGGGGGAGGAGGGGAGTTCGAGAGGGTTAGGATGCGGANCCGCTGGGGAACCCGATGGCGGCGAGGGAAAGGGAGGAGGAGTCNCGGTGGCTNCAAGCGTCGCGGGTCGGCTCGCNGNATTCCGCAACGNTNTNGCCGAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8696#0 ----------------------------------------------GCCGTCGGGGCAGC 14 consensus_8696#2 ----------------------------------------------GCCGTCGGGGCAGC 14 consensus_8696#1 TCCAACCTCTCTCTCTCTCTCTCGGCGTCGGGATGATGCCGATGCCGCCGTCGGGGCAGC 60 ************** consensus_8696#0 GGCGGCTGGAGTTCAGCTTCCAGGGGTCGTCGGCGTCGGCGGTGGGTGGGGGAGGAGGGG 74 consensus_8696#2 GGCGGCTGGAGTTCAGCTTCCAGNGGTCGTCGGCGTCGGCGGTGGGTGGGGGAGGAGGGG 74 consensus_8696#1 GGCGGCTGGAGTTCAGCTTCCAGGGGTCGTCGGCGTCGGCGGTGGGTGGGGGAGGAGGGG 120 *********************** ************************************ consensus_8696#0 AGTTCGAGAGGGTTAGGATGCGGAGCCGCTGGGGAACCCGATGGCGGCGAGGGAAGGGNA 134 consensus_8696#2 AGTTCGAGAGGGTTAGGATGCGGANCCGCTGGGGAACCCGATGGCGGCGAGGGAAAGGGA 134 consensus_8696#1 AGTTCGAGAGGGTTAGGATGCGGANCCGCTGGGGAACCCGATGGCGGCGAGGGAANNGGA 180 ************************ ****************************** * * consensus_8696#0 GGAGGAGTCGCGGTGGCTGCAGGCGTCGCGGGTCGGCTCGCCGGAGTCCGGCACGCCGTC 194 consensus_8696#2 GGAGGAGTCNCGGTGGCTNCAAGCGTCGCGGGTCGGCTCGCNGNATTCCGCAACGNTNTN 194 consensus_8696#1 GGAGGAGTCGCGGTNGCTGCAGGCGTCGCGGGTCGGCTCGCCGGAGTCCCGCANGNCGTC 240 ********* **** *** ** ******************* * * *** * * * consensus_8696#0 GCCGGAGTTCT-GGGGGCAGCAGCAGCAGCAGCAGCTCCAGCGGCTATACCCGGCGTCGG 253 consensus_8696#2 GCCGAA------------------------------------------------------ 200 consensus_8696#1 GCCGGAGTTCTTNGGGGCAACANCAACAGCAACAACTCCANCG-CTATACCCG-CGTCGC 298 **** * consensus_8696#0 CGGGGAGCTCGCCGTCGAGGGC-GCAGGCGATCGCCGGGTACCGACGCGAGATGCTCGAC 312 consensus_8696#2 ------------------------------------------------------------ consensus_8696#1 --GGGAGTTG--CGTCGAGGCCAGCATCCC------------------------------ 324 consensus_8696#0 CTCGTCCGCGGCCTCCCCGAGTCCTGCTACGAGCTCTCCCTCCGCGACATCGTCGAGTCC 372 consensus_8696#2 ------------------------------------------------------------ consensus_8696#1 ------------------------------------------------------------ consensus_8696#0 CCTCCTCCTCCGCCGCCGCATCCTCTCCCTCCTCCTCCCCCCACCCCACCACCTCCCACC 432 consensus_8696#2 ------------------------------------------------------------ consensus_8696#1 ------------------------------------------------------------ consensus_8696#0 GCCGAAGCCA 442 consensus_8696#2 ---------- consensus_8696#1 ---------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||