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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8711#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 2255 fasta sequence
[ATATGCTTCCTTTATGGTGAAGTTATAAAGCTGGGATTCTGATGGTTTGACGAAAGCTCTTGGTCCCCAAACAATACTAAACTCCTTTTTCTGTCACATCTTACCGTATTTATATTAAGAAGGATGGACCTTAATATGACAAATCTTTGGTTTCATGGGAAGGAACATATAGCTGCTTCGCCATTCCCACAAGTTGCAACATCAATGAACTTCACTTGCCTTGGCAGCTCAAAAACAATCGAGACTTCTAAAAAAATGTTTCAGCAGAGCGATCAAAGCTTGTCTATTCCTGATGATGGATGCAGGCTTGTCCTTGGACTTGGACCAACACCTAATCTACATTATGCTGATAATGAGTCATCCGGTGGCAACAGGGATAAAGAATCTGCAAATTTGTTCAGCCAACATTTTGCCATAGCCGATCATGGTCTGATGTTGGGCATTTCGAGAGGCGGCACAAGAAATTTTCAAGCCACAACAATGATCGAGAAGTATTCACATCAAAATAGAAATGGTATCGTCTTCCCACTTACTGATGAAGGATCAACTTCAGCTAAAAGGAAACCAGGTGGTTATGTGCTGCCACTTCTGTTTGCTCCAAGATCAGATGATATCTGTCCCAATGGAACACCACCAGTGACCGATATTCAACATGTTGAAACTGTAGATGATTGTGACGATGATCACATTACGTCTCTTAATCAGCAGAAGGTTCAGATTAGCCCCGAGCCTTCAGCAACAACTGATTGTTCTTTTGCTGCAACTTCAGATATGATATTCTCCTCAACTAGCACGGAGCAGAGAAGTCACCAACGACATCCTAAGAAGTGTAGGTTCAATGGGTGTTCAAAAGGAGCAAGAGGGGCAACAGGGCTCTGCATTTCCCATGGTGGTGGTCAGCGGTGTCAAAAGCCTGGTTGCAACAAAGGTGCCGAGAGCCGAACAGCTTACTGCAAATCTCATGGTGGAGGGAAACGGTGTCAGGAGCTAGGCTGCACCAAAAGTGCTGAAGGGAAGACTGAGTTCTGCATTGCTCATGGTGGTGGGCGTCGATGCGGAACTCCGGGGTGTACGAAGGCAGCAAGGGGAAGATCAGGATTTTGCATAAAACATGGTGGAGGGAAGAGATGCAGGGTAGAGGGATGCAGCAGGAGTGCCGAAGGACAGTTTGGGTTGTGCATCTCACATGGAGGTGGTCGCCGGTGTCAGTACCCGAACTGCAGTAAGGGAGCACAAGGAGGCACCATGTTTTGCAAGTCCCATGGTGGAGGCAAACGGTGTATATTTGAAGGCTGTACTAAAGGTGCCGAGGGCAACACGCTGCTATGTAAAGGGCACGGTGGTGGTAAGAGGTGCCTCTTTGAGGGAGGTGGTGTCTGTCCTAAAAGTGTTCATGGTGGAACTAGCTTCTGCGTCGCTCATGGAGGCGGCAAACGCTGTTCTGTACCAGGATGTACCAAGAGCGCCCGTGGTCGCACTGATTGCTGCGTGAGGCATGGTGGTGGCAAGCGTTGCAAGGTTGACGGTTGCGACAAGAGTGCTCAGGGGAGCACGGACTTCTGCAAGGCGCATGGAGGCGGCAAACGATGCGCTTGGAGCACCGGCTGTGAGAGGTTTGCAAGGGGAAGGAGTGGGTTATGTGCTGCACATGGAACCCTGATGGCTTCAAAGCAAGTGCCTGAATCTGAGCACAGCAGAGGCATGATCAGGAACAGCCTCTTCAGCAAGATGGTCTCTGCATCCTCGATGACGGCTGGTGCTAGCATGGATCATGCCATCTCTTCTTCTCTCCCTGGTGCCTCGTCGGATCGCGGTGAGTCCTTGGAAGAGATGCGGAACGGCAAGCTCCTGATACCGCATCAGGTCCTGGTTCCTGGTTCAATGAGGCCATCTTCTTCGCATGGCAAAGGTCAAGAGAACGGAGGGAGCCAGGAGCAGCAGTGCTTCGGGTTCGTCGTGCCGGAGGGGAGGGTTCATGGTGGGGG-CCTGATGTCCATACTTGGAGCTAGAGGCAATCTTGACGATCCGAGGGACTGAATTTTGCTGAAAATGTTAAAGTTGCAGCTATTTTTATGCTGTCATTTATGATTTCTGCATCTAGAATCCATAAGATTTCAGATCACCATTGCACTATGCTGTCAAGCATGACTGCTTGATCGAAATTGAGTTCTGAATTATGTGGCTTAGGCCTTGTATAAAGTATTTTGTCATTCATATGGCACTTACATACACAAAGAGCAGAATACCTGAAGAGC]
[+] EMBL AK062582 [ATATGCTTCCTTTATGGTGAAGTTATAAAGCTGGGATTCTGATGGTTTGACGAAAGCTCTTGGTCCCCAAACAATACTAAACTCCTTTTTCTGTCACATCTTACCGTATTTATATTAAGAAGGATGGACCTTAATATGACAAATCTTTGGTTTCATGGGAAGGAACATATAGCTGCTTCGCCATTCCCACAAGTTGCAACATCAATGAACTTCACTTGCCTTGGCAGCTCAAAAACAATCGAGACTTCTAAAAAAATGTTTCAGCAGAGCGATCAAAGCTTGTCTATTCCTGATGATGGATGCAGGCTTGTCCTTGGACTTGGACCAACACCTAATCTACATTATGCTGATAATGAGTCATCCGGTGGCAACAGGGATAAAGAATCTGCAAATTTGTTCAGCCAACATTTTGCCATAGCCGATCATGGTCTGATGTTGGGCATTTCGAGAGGCGGCACAAGAAATTTTCAAGCCACAACAATGATCGAGAAGTATTCACATCAAAATAGAAATGGTATCGTCTTCCCACTTACTGATGAAGGATCAACTTCAGCTAAAAGGAAACCAGGTGGTTATGTGCTGCCACTTCTGTTTGCTCCAAGATCAGATGATATCTGTCCCAATGGAACACCACCAGTGACCGATATTCAACATGTTGAAACTGTAGATGATTGTGACGATGATCACATTACGTCTCTTAATCAGCAGAAGGTTCAGATTAGCCCCGAGCCTTCAGCAACAACTGATTGTTCTTTTGCTGCAACTTCAGATATGATATTCTCCTCAACTAGCACGGAGCAGAGAAGTCACCAACGACATCCTAAGAAGTGTAGGTTCAATGGGTGTTCAAAAGGAGCAAGAGGGGCAACAGGGCTCTGCATTTCCCATGGTGGTGGTCAGCGGTGTCAAAAGCCTGGTTGCAACAAAGGTGCCGAGAGCCGAACAGCTTACTGCAAATCTCATGGTGGAGGGAAACGGTGTCAGGAGCTAGGCTGCACCAAAAGTGCTGAAGGGAAGACTGAGTTCTGCATTGCTCATGGTGGTGGGCGTCGATGCGGAACTCCGGGGTGTACGAAGGCAGCAAGGGGAAGATCAGGATTTTGCATAAAACATGGTGGAGGGAAGAGATGCAGGGTAGAGGGATGCAGCAGGAGTGCCGAAGGACAGTTTGGGTTGTGCATCTCACATGGAGGTGGTCGCCGGTGTCAGTACCCGAACTGCAGTAAGGGAGCACAAGGAGGCACCATGTTTTGCAAGTCCCATGGTGGAGGCAAACGGTGTATATTTGAAGGCTGTACTAAAGGTGCCGAGGGCAACACGCTGCTATGTAAAGGGCACGGTGGTGGTAAGAGGTGCCTCTTTGAGGGAGGTGGTGTCTGTCCTAAAAGTGTTCATGGTGGAACTAGCTTCTGCGTCGCTCATGGAGGCGGCAAACGCTGTTCTGTACCAGGATGTACCAAGAGCGCCCGTGGTCGCACTGATTGCTGCGTGAGGCATGGTGGTGGCAAGCGTTGCAAGGTTGACGGTTGCGACAAGAGTGCTCAGGGGAGCACGGACTTCTGCAAGGCGCATGGAGGCGGCAAACGATGCGCTTGGAGCACCGGCTGTGAGAGGTTTGCAAGGGGAAGGAGTGGGTTATGTGCTGCACATGGAACCCTGATGGCTTCAAAGCAAGTGCCTGAATCTGAGCACAGCAGAGGCATGATCAGGAACAGCCTCTTCAGCAAGATGGTCTCTGCATCCTCGATGACGGCTGGTGCTAGCATGGATCATGCCATCTCTTCTTCTCTCCCTGGTGCCTCGTCGGATCGCGGTGAGTCCTTGGAAGAGATGCGGAACGGCAAGCTCCTGATACCGCATCAGGTCCTGGTTCCTGGTTCAATGAGGCCATCTTCTTCGCATGGCAAAGGTCAAGAGAACGGAGGGAGCCAGGAGCAGCAGTGCTTCGGGTTCGTCGTGCCGGAGGGGAGGGTTCATGGTGGGGG CCTGATGTCCATACTTGGAGCTAGAGGCAATCTTGACGATCCGAGGGACTGAATTTTGCTGAAAATGTTAAAGTTGCAGCTATTTTTATGCTGTCATTTATGATTTCTGCATCTAGAATCCATAAGATTTCAGATCACCATTGCACTATGCTGTCAAGCATGACTGCTTGATCGAAATTGAGTTCTGAATTATGTGGCTTAGGCCTTGTATAAAGTATTTTGTCATTCATATGGCACTTACATACACAAAGAGCAGAATACCTGAAGAGC]
[+] EMBL AW069910 [ GGCA GGTGGTGGTAAGAGGTGCCTCTTTGAGGGAGGTGGTGTCTGTCCTAAAAGTGTTCATGGTGGAACTAGCTTCTGCGTCGCTCATGGAGGCGGCAAACG ]
[+] EMBL CF311421 [ AAGAGGTGCCTCTTTGAGGGAGGTGGTGTCTGTCCTAAAAGTGTTCATGGTGGAACTAGCTTCTGCGTCGCTCATGGAGGCGGCAAACGCTGTTCTGTACCAGGATGTACCAAGAGCGCCCGTGGTCGCACTGATTGCTGCGTGAGGCATGGTGGTGGCAAGCGTTGCAAGGTTGACGGTCGCGACAAGAGTGCTCAGGGGAGCACGGACTTCTGCAAGGCGCATGGAGGCGGCAAACGATGCGCTTGGAGCACCGGCTGTGAGAGGTTTGCAAGGGGAAGGAGTGGGTTATGTGCTGCACATGGAACCCTGATGGCTTCAAAGCAAGTGCCTGAATCTGAGCACAGCAGAGGCATGATCAGGAACAGCCTCTTCAGCAAGATGGTCTCTGCATCCTCGATGACGGCTGGTGCTAGCATGGATCATGCCATCTCTTCTTCTCTCCCTGGTGCCTCGTCGGATCGCGGTGAGTCCTTGGAAGAGATGCGGAACGGCAAGCTCCTG ]
[+] EMBL CF281437 [ GCTGCACATGGAACCCTGATGGCTTCAAAGCAAGTGCCTGAATCTGAGCACAGCAGAGGCATGATCAGGAACAGCCTCTTCAGCAAGATGGTCTCTGCATCCTCGATGACGGCTGGTGCTAGCATGGATCATGCCATCTCTTCTTCTCTCCCTGGTGCCTCGTCGGATCGCGGTGAGTCCTTGGAAGAGATGCGGAACGGCAAGCTCCTGATACCGCATCAGGTCCTGGTTCCTGGTTCAATGAGGCCATCTTCTTCGCATGGCAAAGGTCAAGAGGACGGAGGGAGCCAGGAGCAGCAGTGCTTCGGGTTCGTCGTGCCGGAGGGGAGGGTTCATGGTGGGGGCCCTGATGTCCATGCTTGGAGCTGGAG ]
consensusID : consensus_8711#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 362 fasta sequence
[AAGGTCAAGAGGACGGAGGGAGCCAGGAGCAGCAGTGCTTCGGGTTCGTCGTGCCGGAGGGGAGGGTTCATGGTGGGGGCCTGATGTCCATGCTTGGAGCTGGAGGCAATCTTGACGATCCGAAGGACTGAATTTTGCTGAAAATGTTAAAGTTGCAGCTATTTTTATGCTGTCATTTATGATTTCTGCATCTAGAATCTATAAGATTTCAGATCACCATTGCACTATGCTGTCAAGCATGACTGCTTGATCGAAACTGAATTTTGAATTATGTGGCTTAGGCCTTGTATAAAGTATTTTGTCATTCATATGGCACTTACATACACAAAGAGCAGAATAAAAAAAAAAAAAAAAAAAAAAAA]
[-] EMBL CF311422 [AAGGTCAAGAGGACGGAGGGAGCCAGGAGCAGCAGTGCTTCGGGTTCGTCGTGCCGGAGGGGAGGGTTCATGGTGGGGGCCTGATGTCCATGCTTGGAGCTGGAGGCAATCTTGACGATCCGAAGGACTGAATTTTGCTGAAAATGTTAAAGTTGCAGCTATTTTTATGCTGTCATTTATGATTTCTGCATCTAGAATCTATAAGATTTCAGATCACCATTGCACTATGCTGTCAAGCATGACTGCTTGATCGAAACTGAATTTTGAATTATGTGGCTTAGGCCTTGTATAAAGTATTTTGTCATTCATATGGCACTTACATACACAAAGAGCAGAATAAAAAAAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8711#0 ATATGCTTCCTTTATGGTGAAGTTATAAAGCTGGGATTCTGATGGTTTGACGAAAGCTCT 60
consensus_8711#1 ------------------------------------------------------------
consensus_8711#0 TGGTCCCCAAACAATACTAAACTCCTTTTTCTGTCACATCTTACCGTATTTATATTAAGA 120
consensus_8711#1 ------------------------------------------------------------
consensus_8711#0 AGGATGGACCTTAATATGACAAATCTTTGGTTTCATGGGAAGGAACATATAGCTGCTTCG 180
consensus_8711#1 ------------------------------------------------------------
consensus_8711#0 CCATTCCCACAAGTTGCAACATCAATGAACTTCACTTGCCTTGGCAGCTCAAAAACAATC 240
consensus_8711#1 ------------------------------------------------------------
consensus_8711#0 GAGACTTCTAAAAAAATGTTTCAGCAGAGCGATCAAAGCTTGTCTATTCCTGATGATGGA 300
consensus_8711#1 ------------------------------------------------------------
consensus_8711#0 TGCAGGCTTGTCCTTGGACTTGGACCAACACCTAATCTACATTATGCTGATAATGAGTCA 360
consensus_8711#1 ------------------------------------------------------------
consensus_8711#0 TCCGGTGGCAACAGGGATAAAGAATCTGCAAATTTGTTCAGCCAACATTTTGCCATAGCC 420
consensus_8711#1 ------------------------------------------------------------
consensus_8711#0 GATCATGGTCTGATGTTGGGCATTTCGAGAGGCGGCACAAGAAATTTTCAAGCCACAACA 480
consensus_8711#1 ------------------------------------------------------------
consensus_8711#0 ATGATCGAGAAGTATTCACATCAAAATAGAAATGGTATCGTCTTCCCACTTACTGATGAA 540
consensus_8711#1 ------------------------------------------------------------
consensus_8711#0 GGATCAACTTCAGCTAAAAGGAAACCAGGTGGTTATGTGCTGCCACTTCTGTTTGCTCCA 600
consensus_8711#1 ------------------------------------------------------------
consensus_8711#0 AGATCAGATGATATCTGTCCCAATGGAACACCACCAGTGACCGATATTCAACATGTTGAA 660
consensus_8711#1 ------------------------------------------------------------
consensus_8711#0 ACTGTAGATGATTGTGACGATGATCACATTACGTCTCTTAATCAGCAGAAGGTTCAGATT 720
consensus_8711#1 ------------------------------------------------------------
consensus_8711#0 AGCCCCGAGCCTTCAGCAACAACTGATTGTTCTTTTGCTGCAACTTCAGATATGATATTC 780
consensus_8711#1 ------------------------------------------------------------
consensus_8711#0 TCCTCAACTAGCACGGAGCAGAGAAGTCACCAACGACATCCTAAGAAGTGTAGGTTCAAT 840
consensus_8711#1 ------------------------------------------------------------
consensus_8711#0 GGGTGTTCAAAAGGAGCAAGAGGGGCAACAGGGCTCTGCATTTCCCATGGTGGTGGTCAG 900
consensus_8711#1 ------------------------------------------------------------
consensus_8711#0 CGGTGTCAAAAGCCTGGTTGCAACAAAGGTGCCGAGAGCCGAACAGCTTACTGCAAATCT 960
consensus_8711#1 ------------------------------------------------------------
consensus_8711#0 CATGGTGGAGGGAAACGGTGTCAGGAGCTAGGCTGCACCAAAAGTGCTGAAGGGAAGACT 1020
consensus_8711#1 ------------------------------------------------------------
consensus_8711#0 GAGTTCTGCATTGCTCATGGTGGTGGGCGTCGATGCGGAACTCCGGGGTGTACGAAGGCA 1080
consensus_8711#1 ------------------------------------------------------------
consensus_8711#0 GCAAGGGGAAGATCAGGATTTTGCATAAAACATGGTGGAGGGAAGAGATGCAGGGTAGAG 1140
consensus_8711#1 ------------------------------------------------------------
consensus_8711#0 GGATGCAGCAGGAGTGCCGAAGGACAGTTTGGGTTGTGCATCTCACATGGAGGTGGTCGC 1200
consensus_8711#1 ------------------------------------------------------------
consensus_8711#0 CGGTGTCAGTACCCGAACTGCAGTAAGGGAGCACAAGGAGGCACCATGTTTTGCAAGTCC 1260
consensus_8711#1 ------------------------------------------------------------
consensus_8711#0 CATGGTGGAGGCAAACGGTGTATATTTGAAGGCTGTACTAAAGGTGCCGAGGGCAACACG 1320
consensus_8711#1 ------------------------------------------------------------
consensus_8711#0 CTGCTATGTAAAGGGCACGGTGGTGGTAAGAGGTGCCTCTTTGAGGGAGGTGGTGTCTGT 1380
consensus_8711#1 ------------------------------------------------------------
consensus_8711#0 CCTAAAAGTGTTCATGGTGGAACTAGCTTCTGCGTCGCTCATGGAGGCGGCAAACGCTGT 1440
consensus_8711#1 ------------------------------------------------------------
consensus_8711#0 TCTGTACCAGGATGTACCAAGAGCGCCCGTGGTCGCACTGATTGCTGCGTGAGGCATGGT 1500
consensus_8711#1 ------------------------------------------------------------
consensus_8711#0 GGTGGCAAGCGTTGCAAGGTTGACGGTTGCGACAAGAGTGCTCAGGGGAGCACGGACTTC 1560
consensus_8711#1 ------------------------------------------------------------
consensus_8711#0 TGCAAGGCGCATGGAGGCGGCAAACGATGCGCTTGGAGCACCGGCTGTGAGAGGTTTGCA 1620
consensus_8711#1 ------------------------------------------------------------
consensus_8711#0 AGGGGAAGGAGTGGGTTATGTGCTGCACATGGAACCCTGATGGCTTCAAAGCAAGTGCCT 1680
consensus_8711#1 ------------------------------------------------------------
consensus_8711#0 GAATCTGAGCACAGCAGAGGCATGATCAGGAACAGCCTCTTCAGCAAGATGGTCTCTGCA 1740
consensus_8711#1 ------------------------------------------------------------
consensus_8711#0 TCCTCGATGACGGCTGGTGCTAGCATGGATCATGCCATCTCTTCTTCTCTCCCTGGTGCC 1800
consensus_8711#1 ------------------------------------------------------------
consensus_8711#0 TCGTCGGATCGCGGTGAGTCCTTGGAAGAGATGCGGAACGGCAAGCTCCTGATACCGCAT 1860
consensus_8711#1 ------------------------------------------------------------
consensus_8711#0 CAGGTCCTGGTTCCTGGTTCAATGAGGCCATCTTCTTCGCATGGCAAAGGTCAAGAGAAC 1920
consensus_8711#1 ----------------------------------------------AAGGTCAAGAGGAC 14
*********** **
consensus_8711#0 GGAGGGAGCCAGGAGCAGCAGTGCTTCGGGTTCGTCGTGCCGGAGGGGAGGGTTCATGGT 1980
consensus_8711#1 GGAGGGAGCCAGGAGCAGCAGTGCTTCGGGTTCGTCGTGCCGGAGGGGAGGGTTCATGGT 74
************************************************************
consensus_8711#0 GGGGGCCTGATGTCCATACTTGGAGCTAGAGGCAATCTTGACGATCCGAGGGACTGAATT 2040
consensus_8711#1 GGGGGCCTGATGTCCATGCTTGGAGCTGGAGGCAATCTTGACGATCCGAAGGACTGAATT 134
***************** ********* ********************* **********
consensus_8711#0 TTGCTGAAAATGTTAAAGTTGCAGCTATTTTTATGCTGTCATTTATGATTTCTGCATCTA 2100
consensus_8711#1 TTGCTGAAAATGTTAAAGTTGCAGCTATTTTTATGCTGTCATTTATGATTTCTGCATCTA 194
************************************************************
consensus_8711#0 GAATCCATAAGATTTCAGATCACCATTGCACTATGCTGTCAAGCATGACTGCTTGATCGA 2160
consensus_8711#1 GAATCTATAAGATTTCAGATCACCATTGCACTATGCTGTCAAGCATGACTGCTTGATCGA 254
***** ******************************************************
consensus_8711#0 AATTGAGTTCTGAATTATGTGGCTTAGGCCTTGTATAAAGTATTTTGTCATTCATATGGC 2220
consensus_8711#1 AACTGAATTTTGAATTATGTGGCTTAGGCCTTGTATAAAGTATTTTGTCATTCATATGGC 314
** *** ** **************************************************
consensus_8711#0 ACTTACATACACAAAGAGCAGAATACCTGAAGAGC------------- 2255
consensus_8711#1 ACTTACATACACAAAGAGCAGAATAAAAAAAAAAAAAAAAAAAAAAAA 362
************************* ** *
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||